diff --git a/descriptors/afni/3dDespike.json b/descriptors/afni/3dDespike.json index 3d6eac427..18ac6df24 100644 --- a/descriptors/afni/3dDespike.json +++ b/descriptors/afni/3dDespike.json @@ -1,6 +1,6 @@ { "name": "3dDespike", - "command-line": "3dDespike [IN_FILE]", + "command-line": "3dDespike [PREFIX] [IN_FILE]", "author": "AFNI Developers", "description": "Removes 'spikes' from the 3D+time input dataset and writes a new dataset with the spike values replaced by something more pleasing to the eye.", "url": "https://afni.nimh.nih.gov/", @@ -12,15 +12,23 @@ "value-key": "[IN_FILE]", "description": "Input file to 3ddespike.", "optional": false + }, + { + "id": "prefix", + "name": "Prefix", + "type": "String", + "value-key": "[PREFIX]", + "command-line-flag": "-prefix", + "description": "Prefix for output file.", + "optional": true } ], "output-files": [ { "name": "Out file", "id": "out_file", - "path-template": "[IN_FILE]", - "value-key": "[OUT_FILE]", - "command-line-flag": "-prefix", + "value-key": "[PREFIX]", + "path-template": "[PREFIX]", "optional": true, "description": "Output file." }