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vcf #40

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tamsinlh opened this issue Nov 28, 2022 · 0 comments

tamsinlh commented Nov 28, 2022

My stats file has several thousand that passed, but my output vcf file is empty. I used the line below.

rad_haplotyper.pl -x 28 -v BIA.10FinalDPQMA.recode.vcf -b mapped.bed --genomic_ref -r reference.fasta --vcfout HT.10FinalDPQMABIA.recode.vcf

Please advise.
HT.10FinalDPQMABIA.recode.txt

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