From 7046a7b29c41b8d35117af67ce44c9285a482676 Mon Sep 17 00:00:00 2001
From: Clemente Calabrese <115489880+cl3mente@users.noreply.github.com>
Date: Tue, 18 Jun 2024 15:03:51 +0200
Subject: [PATCH] Update Dockerfile

---
 Dockerfile | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 2e5280d..f22d225 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -75,14 +75,16 @@ RUN apt-get install -y locate libc6 muscle
 #USER appuser
 
 # Copy the source code into the container.
-COPY . .
+RUN git clone https://github.com/cl3mente/PlantPath2023.git
+
+RUN cp -f /app/PlantPath2023/ParaAT.pl /app/ParaAT2.0/ParaAT.pl
 
 ENV PATH=$PATH:/app/KaKs_Calculator3.0/src:/app/ParaAT2.0:/app/OrthoFinder
 
 RUN mkdir input
 
-RUN cp -f /app/ParaAT.pl /app/ParaAT2.0/ParaAT.pl
+
 
 VOLUME /app/input
 # CMD python HGT.py -i /data/bioinf2023/PlantPath2023/genomeANDgff -OFr /data/bioinf2023/PlantPath2023/genomeANDgff/results/prot/f7b812/Results_Feb23  -v -nt 50
-#ENTRYPOINT ["python","./HGT.py", "-i", "input"]
\ No newline at end of file
+#ENTRYPOINT ["python","./HGT.py", "-i", "input"]