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Pipeline testing on Windows #26
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Error messages from running
Also suggest better organized "data" folder. |
Error messages from running
The above error makes loading |
Hi Kai, Thanks for posting about this. It seems like a number of people have had a problem with the |
Regarding this error:
Could you please print Also, regarding this:
Which data folder are you referring to? The |
Suggestions:
No other issues in |
In testing
|
Hi Kai,
The most likely cause of this, I think, is that your R session wasn't able to find |
The main barrier to using Windows computers to run the processing pipeline was the lack of support for Cutadapt. This is only relevant for the ITS pipeline, and this may be addressed by the Docker container that @rbartelme will soon add to the repo. I'm leaving this issue open in case any Windows users want to confirm that either (1) the 16S pipeline still works for them, or (2) the Docker container works for them. |
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