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Problems with root_cells #745

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Angle28 opened this issue Jan 16, 2025 · 0 comments
Open

Problems with root_cells #745

Angle28 opened this issue Jan 16, 2025 · 0 comments

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@Angle28
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Angle28 commented Jan 16, 2025

Hi, I'm running this code
root_cells<-"AAACCTGCACACATGT-1_1_2"
cds <- order_cells(cds,root_cells=root_cells)
These problems arise
Error: principal graph is too large. order_cells doesn't support more than 10 thousand centroids.
Traceback:

  1. order_cells(cds, root_cells = root_cells)
  2. assertthat::assert_that(igraph::vcount(principal_graph(cds)[[reduction_method]]) <
    . 10000, msg = paste("principal graph is too large. order_cells doesn't support",
    . "more than 10 thousand centroids."))
    The amount of data is not very large, 20,000 cells have this problem, how can I solve it
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