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Fix: MultiQC HTML visualisation change #2

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zipho opened this issue May 19, 2021 · 2 comments
Open

Fix: MultiQC HTML visualisation change #2

zipho opened this issue May 19, 2021 · 2 comments
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fix A fix is modification not neccessary a bug pre-training pre-training
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@zipho
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zipho commented May 19, 2021

MultiQC HTML visualisation not correct as it is in zip format. Liase with IRIDA core team.

@zipho zipho added the fix A fix is modification not neccessary a bug label May 19, 2021
@zipho zipho added this to the First Release milestone May 19, 2021
@zipho zipho changed the title Fix: MultiQC HTML visualisation Fix: MultiQC HTML visualisation change May 19, 2021
@zipho zipho added the pre-training pre-training label Jun 8, 2021
@zipho zipho assigned zipho and unassigned pvanheus Jun 12, 2021
@pvanheus
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As per conversation on IRIDA Gitter, IRIDA does not seem to have a good way to display compound datatypes. HTML support was added recently in phac-nml/irida#849.

One option is to convert the output to a web page with https://github.com/zTrix/webpage2html and supply a simple HTML.

@pvanheus
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As noted in this issue phac-nml/irida#1057, the problem comes when Galaxy turns the HTML into a ZIP at download time. If, as the last stage in the workflow, you change the Datatype to txt, then this conversion does not happen. This might be a solution to making the MultiQC output work.

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fix A fix is modification not neccessary a bug pre-training pre-training
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