fix test specfiles

compdyn · May 16, 2024 · 359e9cd · 359e9cd
1 parent 5d6668f
commit 359e9cd
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Showing 32 changed files with 33 additions and 1 deletion.
diff --git a/src/partmc.F90 b/src/partmc.F90
@@ -753,7 +753,7 @@ subroutine partmc_part(file)
     end if
 
     if (run_part_opt%do_tchem) then
-       call pmc_tchem_initialize(tchem_config_filename, gas_data, gas_state, aero_data)
+       call pmc_tchem_initialize(tchem_config_filename, gas_data, gas_state_init, aero_data)
     end if
 
     ! re-initialize RNG with the given seed

diff --git a/src/tchem_interface.F90 b/src/tchem_interface.F90
@@ -70,6 +70,8 @@ subroutine pmc_tchem_initialize(config_filename, gas_data, gas_state, aero_data)
 
     call gas_state_set_size(gas_state, nSpec)
 
+
+    call TChem_getSpeciesNames()
     ! name of gas species
     !do i = 1,nSpec
     !   gas_data%name(i) = "H2O"

diff --git a/test/additive/run_part.spec b/test/additive/run_part.spec
@@ -12,6 +12,7 @@ t_output 60                     # output interval (0 disables) (s)
 t_progress 60                   # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/average/run_part.spec b/test/average/run_part.spec
@@ -11,6 +11,7 @@ t_output 600                    # output interval (0 disables) (s)
 t_progress 600                  # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/bidisperse/run_part.spec b/test/bidisperse/run_part.spec
@@ -11,6 +11,7 @@ t_output 10                     # output interval (0 disables) (s)
 t_progress 60                   # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/brownian/run_part.spec b/test/brownian/run_part.spec
@@ -11,6 +11,7 @@ t_output 3600                   # output interval (0 disables) (s)
 t_progress 21600                # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/camp/camp.spec b/test/camp/camp.spec
@@ -12,6 +12,7 @@ t_progress 3600                  # progress printing interval (0 disables) (s)
 
 do_camp_chem yes                # whether to use CAMP for chemistry
 camp_config config.json
+do_tchem no
 
 gas_init gas_init.dat           # initial gas concentrations
 

diff --git a/test/condense/run_part.spec b/test/condense/run_part.spec
@@ -11,6 +11,7 @@ t_output 10                     # output interval (0 disables) (s)
 t_progress 60                   # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/emission/run_part.spec b/test/emission/run_part.spec
@@ -11,6 +11,7 @@ t_output 1200                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/fractal/run_part_brown_cont_df_1_8_restart.spec b/test/fractal/run_part_brown_cont_df_1_8_restart.spec
@@ -11,6 +11,7 @@ t_output 5000                   # output interval (0 disables) (s)
 t_progress 1000                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 temp_profile temp_cont.dat      # temperature profile file
 pressure_profile pressure.dat   # pressure profile file

diff --git a/test/fractal/run_part_brown_cont_df_1_8_upto1000s.spec b/test/fractal/run_part_brown_cont_df_1_8_upto1000s.spec
@@ -11,6 +11,7 @@ t_output 50                     # output interval (0 disables) (s)
 t_progress 10                   # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/fractal/run_part_brown_free_df_2_4_restart.spec b/test/fractal/run_part_brown_free_df_2_4_restart.spec
@@ -11,6 +11,7 @@ t_output 5000                   # output interval (0 disables) (s)
 t_progress 1000                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 temp_profile temp_free.dat      # temperature profile file
 pressure_profile pressure.dat   # pressure profile file

diff --git a/test/fractal/run_part_brown_free_df_2_4_upto1000s.spec b/test/fractal/run_part_brown_free_df_2_4_upto1000s.spec
@@ -11,6 +11,7 @@ t_output 50                     # output interval (0 disables) (s)
 t_progress 10                   # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/loss/run_chamber_part.spec b/test/loss/run_chamber_part.spec
@@ -11,6 +11,7 @@ t_output 3600                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/loss/run_constant_part.spec b/test/loss/run_constant_part.spec
@@ -11,6 +11,7 @@ t_output 600                    # output interval (0 disables) (s)
 t_progress 600                  # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/loss/run_drydep_part.spec b/test/loss/run_drydep_part.spec
@@ -11,6 +11,7 @@ t_output 21600                  # output interval (0 disables) (s)
 t_progress 14400                # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/loss/run_volume_part.spec b/test/loss/run_volume_part.spec
@@ -11,6 +11,7 @@ t_output 60                     # output interval (0 disables) (s)
 t_progress 60                   # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/mixing_state/run_part.spec b/test/mixing_state/run_part.spec
@@ -11,6 +11,7 @@ t_output 1                      # output interval (0 disables) (s)
 t_progress 1                    # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas concentrations

diff --git a/test/mosaic/run_part.spec b/test/mosaic/run_part.spec
@@ -11,6 +11,7 @@ t_output 3600                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/mosaic/run_part_restarted.spec b/test/mosaic/run_part_restarted.spec
@@ -11,6 +11,7 @@ t_output 3600                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 temp_profile temp.dat           # temperature profile file
 pressure_profile pressure.dat   # pressure profile file

diff --git a/test/nucleate/run_part.spec b/test/nucleate/run_part.spec
@@ -11,6 +11,7 @@ t_output 60                     # output interval (0 disables) (s)
 t_progress 600                  # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/parallel/run_part_parallel_dist.spec b/test/parallel/run_part_parallel_dist.spec
@@ -12,6 +12,7 @@ t_output 3600                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/parallel/run_part_parallel_dist_single.spec b/test/parallel/run_part_parallel_dist_single.spec
@@ -12,6 +12,7 @@ t_output 3600                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/parallel/run_part_parallel_mix.spec b/test/parallel/run_part_parallel_mix.spec
@@ -11,6 +11,7 @@ t_output 3600                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/parallel/run_part_serial.spec b/test/parallel/run_part_serial.spec
@@ -11,6 +11,7 @@ t_output 3600                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/sedi/run_part.spec b/test/sedi/run_part.spec
@@ -11,6 +11,7 @@ t_output 300                    # output interval (0 disables) (s)
 t_progress 60                   # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/weighting/run_part_flat.spec b/test/weighting/run_part_flat.spec
@@ -12,6 +12,7 @@ t_output 1200                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/weighting/run_part_flat_source.spec b/test/weighting/run_part_flat_source.spec
@@ -12,6 +12,7 @@ t_output 1200                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/weighting/run_part_flat_specified.spec b/test/weighting/run_part_flat_specified.spec
@@ -12,6 +12,7 @@ t_output 1200                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/weighting/run_part_nummass.spec b/test/weighting/run_part_nummass.spec
@@ -12,6 +12,7 @@ t_output 1200                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/weighting/run_part_nummass_source.spec b/test/weighting/run_part_nummass_source.spec
@@ -12,6 +12,7 @@ t_output 1200                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios

diff --git a/test/weighting/run_part_nummass_specified.spec b/test/weighting/run_part_nummass_specified.spec
@@ -12,6 +12,7 @@ t_output 1200                   # output interval (0 disables) (s)
 t_progress 3600                 # progress printing interval (0 disables) (s)
 
 do_camp_chem no                # whether to run the campible chemistry module
+do_tchem no
 
 gas_data gas_data.dat           # file containing gas data
 gas_init gas_init.dat           # initial gas mixing ratios