_config.yml

# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely edit after that. If you find
# yourself editing this file very often, consider using Jekyll's data files
# feature for the data you need to update frequently.
#
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
#
# If you need help with YAML syntax, here are some quick references for you: 
# https://learn-the-web.algonquindesign.ca/topics/markdown-yaml-cheat-sheet/#yaml
# https://learnxinyminutes.com/docs/yaml/
#
# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.

title: compgen.io
search_enabled: false
subtitle: Data wrangling for computational genomics
email: marcus.breese@ucsf.edu
description: >- # this means to ignore newlines until "baseurl:"
  Data wrangling tools for computational genomics
baseurl: "/" # the subpath of your site, e.g. /blog
url: "https://compgen.io" # the base hostname & protocol for your site, e.g. http://example.com
twitter_username: mbreese
github_username:  compgen-io

logo: "/assets/img/compgen.png"
#logo: "/assets/img/compgen-logo-io-clear-90-cgpipe.png"

# Build settings
remote_theme: pmarsceill/just-the-docs
#theme: "just-the-docs"
plugins:
  - jekyll-feed

# Exclude from processing.
# The following items will not be processed, by default.
# Any item listed under the `exclude:` key here will be automatically added to
# the internal "default list".
#
# Excluded items can be processed by explicitly listing the directories or
# their entries' file path in the `include:` list.
#
# exclude:
#   - .sass-cache/
#   - .jekyll-cache/
#   - gemfiles/
#   - Gemfile
#   - Gemfile.lock
#   - node_modules/
#   - vendor/bundle/
#   - vendor/cache/
#   - vendor/gems/
#   - vendor/ruby/

exclude: 
    - modules/
    - .devcontainer/

aux_links:
  "GitHub":
    - "//github.com/compgen-io"

#footer_content: "compgen.io — tools for computational genomics"

kramdown:
  smart_quotes: ["apos", "apos", "quot", "quot"]


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