Fix check in automatic instance segmentation

computational-cell-analytics · Oct 18, 2024 · 6330b72 · 6330b72
1 parent e623e58
commit 6330b72
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/micro_sam/automatic_segmentation.py b/micro_sam/automatic_segmentation.py
@@ -106,7 +106,7 @@ def automatic_instance_segmentation(
     ndim = image_data.ndim if ndim is None else ndim
 
     if ndim == 2:
-        if image_data.ndim != 2 or image_data.shape[-1] != 3:
+        if (image_data.ndim != 2) and (image_data.ndim != 3 and image_data.shape[-1] != 3):
             raise ValueError(f"The inputs does not match the shape expectation of 2d inputs: {image_data.shape}")
 
         # Precompute the image embeddings.
@@ -135,7 +135,7 @@ def automatic_instance_segmentation(
         else:
             instances = mask_data_to_segmentation(masks, with_background=True, min_object_size=0)
     else:
-        if image_data.ndim != 3 or image_data.shape[-1] != 3:
+        if (image_data.ndim != 3) and (image_data.ndim != 4 and image_data.shape[-1] != 3):
             raise ValueError(f"The inputs does not match the shape expectation of 3d inputs: {image_data.shape}")
 
         instances = automatic_3d_segmentation(