From 1aceaea8a02b4b9f26aaf339bcd1d07df8878d93 Mon Sep 17 00:00:00 2001 From: hdoupe Date: Tue, 1 Oct 2019 11:42:37 -0400 Subject: [PATCH 1/8] Swap to token auth for comp-api-user --- distributed/api/celery_app/__init__.py | 7 +++---- templates/base.html | 2 +- webapp/apps/comp/views/api.py | 8 +++----- 3 files changed, 7 insertions(+), 10 deletions(-) diff --git a/distributed/api/celery_app/__init__.py b/distributed/api/celery_app/__init__.py index a36aa9ff..617d4e86 100644 --- a/distributed/api/celery_app/__init__.py +++ b/distributed/api/celery_app/__init__.py @@ -12,8 +12,7 @@ COMP_URL = os.environ.get("COMP_URL") -COMP_API_USER = os.environ.get("COMP_API_USER") -COMP_API_USER_PASS = os.environ.get("COMP_API_USER_PASS") +COMP_API_TOKEN = os.environ.get("COMP_API_TOKEN") CELERY_BROKER_URL = os.environ.get("CELERY_BROKER_URL", "redis://localhost:6379") CELERY_RESULT_BACKEND = os.environ.get( @@ -112,7 +111,7 @@ def post_results(sender=None, headers=None, body=None, **kwargs): resp = requests.put( f"{COMP_URL}/outputs/api/", json=kwargs["retval"], - auth=(COMP_API_USER, COMP_API_USER_PASS), + headers={"Authorization": f"Token {COMP_API_TOKEN}"}, ) print("resp", resp.status_code) if resp.status_code == 400: @@ -122,7 +121,7 @@ def post_results(sender=None, headers=None, body=None, **kwargs): resp = requests.put( f"{COMP_URL}/inputs/api/", json=kwargs["retval"], - auth=(COMP_API_USER, COMP_API_USER_PASS), + headers={"Authorization": f"Token {COMP_API_TOKEN}"}, ) print("resp", resp.status_code) if resp.status_code == 400: diff --git a/templates/base.html b/templates/base.html index 0f701f77..67c5f4bb 100644 --- a/templates/base.html +++ b/templates/base.html @@ -62,7 +62,7 @@ Sign in - +
  • Sign up diff --git a/webapp/apps/comp/views/api.py b/webapp/apps/comp/views/api.py index 8f99c180..11d20f19 100755 --- a/webapp/apps/comp/views/api.py +++ b/webapp/apps/comp/views/api.py @@ -205,6 +205,8 @@ class OutputsAPIView(RecordOutputsMixin, APIView): simulation results. """ + authentication_classes = (TokenAuthentication,) + def put(self, request, *args, **kwargs): if request.user.is_authenticated and request.user.username == "comp-api-user": ser = OutputsSerializer(data=request.data) @@ -221,11 +223,7 @@ def put(self, request, *args, **kwargs): class MyInputsAPIView(APIView): - authentication_classes = ( - SessionAuthentication, - BasicAuthentication, - TokenAuthentication, - ) + authentication_classes = (TokenAuthentication,) def put(self, request, *args, **kwargs): print("myinputs api method=PUT", kwargs) From 035ea91d97afc37596c49fffe742948c17f3d101 Mon Sep 17 00:00:00 2001 From: hdoupe Date: Tue, 1 Oct 2019 13:34:20 -0400 Subject: [PATCH 2/8] Update workers to new crit --- distributed/docker-compose.template.yml | 6 +----- distributed/dockerfiles/Dockerfile.tasks | 10 +++++----- distributed/dockerfiles/dev.env | 7 ------- distributed/requirements.txt | 2 +- distributed/tasks_template.py | 20 +++++--------------- 5 files changed, 12 insertions(+), 33 deletions(-) delete mode 100644 distributed/dockerfiles/dev.env mode change 100644 => 100755 distributed/requirements.txt diff --git a/distributed/docker-compose.template.yml b/distributed/docker-compose.template.yml index bfecd6aa..5ef26dbd 100644 --- a/distributed/docker-compose.template.yml +++ b/distributed/docker-compose.template.yml @@ -28,17 +28,13 @@ services: - AWS_SECRET_ACCESS_KEY={{AWS_SECRET_ACCESS_KEY}} depends_on: - {{SAFEOWNER}}_{{SAFETITLE}}_tasks - env_file: - - ./dockerfiles/dev.env networks: worker_net: - + {{SAFEOWNER}}_{{SAFETITLE}}_io: image: "{{SAFEOWNER}}_{{SAFETITLE}}_tasks:${TAG}" entrypoint: ./celery_io.sh {{OWNER}} {{TITLE}} depends_on: - {{SAFEOWNER}}_{{SAFETITLE}}_tasks - env_file: - - ./dockerfiles/dev.env networks: worker_net: \ No newline at end of file diff --git a/distributed/dockerfiles/Dockerfile.tasks b/distributed/dockerfiles/Dockerfile.tasks index 1fabc225..f75cd09a 100644 --- a/distributed/dockerfiles/Dockerfile.tasks +++ b/distributed/dockerfiles/Dockerfile.tasks @@ -17,12 +17,12 @@ ARG BUILD_NUM=0 # Edit Dockerfile here for installing necessary packages, copying files, etc. ###################### -ADD ${RAW_REPO_URL}/${BRANCH}/compconfig/install.sh /home +ADD ${RAW_REPO_URL}/${BRANCH}/cs-config/install.sh /home RUN bash /home/install.sh -RUN pip install "git+${REPO_URL}.git@${BRANCH}#egg=compconfig&subdirectory=compconfig" -ADD ${RAW_REPO_URL}/${BRANCH}/compconfig/compconfig/tests/test_functions.py /home -RUN pip install compdevkit>=1.6.0 -RUN py.test /home/test_functions.py -v +RUN pip install "git+${REPO_URL}.git@${BRANCH}#egg=cs-config&subdirectory=cs-config" +ADD ${RAW_REPO_URL}/${BRANCH}/cs-config/cs_config/tests/test_functions.py /home +RUN pip install cs-kit +RUN py.test /home/test_functions.py -v -s ###################### COPY tasks_template.py tasks_template.py diff --git a/distributed/dockerfiles/dev.env b/distributed/dockerfiles/dev.env deleted file mode 100644 index b4a316f6..00000000 --- a/distributed/dockerfiles/dev.env +++ /dev/null @@ -1,7 +0,0 @@ -COMP_URL=http://web:8000 -COMP_API_USER=comp-api-user -COMP_API_USER_PASS=heyhey2222 -OUTPUTS_VERSION=v1 -OBJ_STORAGE_ENDPOINT=https://sfo2.digitaloceanspaces.com -OBJ_STORAGE_EDGE=https://sfo2.cdn.digitaloceanspaces.com -OBJ_STORAGE_BUCKET=compresults-dev diff --git a/distributed/requirements.txt b/distributed/requirements.txt old mode 100644 new mode 100755 index 9135e11d..01dbd981 --- a/distributed/requirements.txt +++ b/distributed/requirements.txt @@ -7,4 +7,4 @@ flask toolz gunicorn boto3 -s3like==1.4.0 +cs-storage \ No newline at end of file diff --git a/distributed/tasks_template.py b/distributed/tasks_template.py index 31a5f2ee..af6599be 100644 --- a/distributed/tasks_template.py +++ b/distributed/tasks_template.py @@ -4,10 +4,10 @@ from api.celery_app import celery_app, task_wrapper try: - import compconfig + import cs_config except ImportError as ie: if os.environ.get("IS_FLASK", "False") == "True": - compconfig = None + cs_config = None else: raise ie @@ -17,11 +17,7 @@ ) @task_wrapper def inputs_get(self, meta_param_dict): - res = compconfig.get_inputs(meta_param_dict) - # get ready for upcoming schema change moving from tuples to dicts. - if isinstance(res, tuple): - res = {"meta_parameters": res[0], "model_parameters": res[1]} - return res + return cs_config.get_inputs(meta_param_dict) @celery_app.task( @@ -29,13 +25,7 @@ def inputs_get(self, meta_param_dict): ) @task_wrapper def inputs_parse(self, meta_param_dict, adjustment, errors_warnings): - res = compconfig.validate_inputs(meta_param_dict, adjustment, errors_warnings) - # get ready for upcoming schema change moving from tuples to dicts. - if isinstance(res, tuple): - res = {"errors_warnings": res[0], "inputs_file": res[1]} - else: - res = {"errors_warnings": res} - return res + return cs_config.validate_inputs(meta_param_dict, adjustment, errors_warnings) @celery_app.task( @@ -46,4 +36,4 @@ def inputs_parse(self, meta_param_dict, adjustment, errors_warnings): ) @task_wrapper def sim(self, meta_param_dict, adjustment): - return compconfig.run_model(meta_param_dict, adjustment) + return cs_config.run_model(meta_param_dict, adjustment) From f3d6272bb8c5ed8776533d3bcf0937b407d5a559 Mon Sep 17 00:00:00 2001 From: hdoupe Date: Wed, 2 Oct 2019 17:09:50 -0400 Subject: [PATCH 3/8] Update workers for new api and using google cloud storage --- distributed/api/celery_app/__init__.py | 17 +++++++++--- distributed/app-deployment.template.yaml | 27 +++---------------- distributed/docker-compose.yml | 11 +++----- distributed/dockerfiles/Dockerfile | 3 ++- distributed/dockerfiles/Dockerfile.celerybase | 2 +- distributed/dockerfiles/Dockerfile.flask | 2 +- distributed/dockerfiles/Dockerfile.tasks | 2 +- distributed/kubernetes/flower-service.yaml | 11 -------- distributed/tasks_template.py | 10 +++---- 9 files changed, 31 insertions(+), 54 deletions(-) mode change 100644 => 100755 distributed/app-deployment.template.yaml mode change 100644 => 100755 distributed/dockerfiles/Dockerfile mode change 100644 => 100755 distributed/dockerfiles/Dockerfile.celerybase mode change 100644 => 100755 distributed/dockerfiles/Dockerfile.flask mode change 100644 => 100755 distributed/dockerfiles/Dockerfile.tasks delete mode 100644 distributed/kubernetes/flower-service.yaml diff --git a/distributed/api/celery_app/__init__.py b/distributed/api/celery_app/__init__.py index 617d4e86..a08ad3b6 100644 --- a/distributed/api/celery_app/__init__.py +++ b/distributed/api/celery_app/__init__.py @@ -8,7 +8,16 @@ from celery.signals import task_postrun from celery.result import AsyncResult -import s3like +import cs_storage + + +try: + from cs_config import functions +except ImportError as ie: + if os.environ.get("IS_FLASK", "False") == "True": + functions = None + else: + raise ie COMP_URL = os.environ.get("COMP_URL") @@ -78,12 +87,12 @@ def f(*args, **kwargs): res["model_version"] = "NA" res.update(dict(outputs, **{"version": version})) else: - res["model_version"] = outputs.pop("model_version") - outputs = s3like.write_to_s3like(task_id, outputs) + res["model_version"] = functions.get_version() + outputs = cs_storage.write(task_id, outputs) res.update({"outputs": outputs, "version": version}) else: res.update(outputs) - except Exception as e: + except Exception: traceback_str = traceback.format_exc() finish = time.time() if "meta" not in res: diff --git a/distributed/app-deployment.template.yaml b/distributed/app-deployment.template.yaml old mode 100644 new mode 100755 index 9f54dd8f..80c7c3e7 --- a/distributed/app-deployment.template.yaml +++ b/distributed/app-deployment.template.yaml @@ -28,10 +28,6 @@ spec: env: - name: OUTPUTS_VERSION value: v1 - - name: OBJ_STORAGE_ENDPOINT - value: "https://sfo2.digitaloceanspaces.com" - - name: OBJ_STORAGE_EDGE - value: "https://sfo2.cdn.digitaloceanspaces.com" - name: TITLE value: "{{TITLE}}" - name: OWNER @@ -45,28 +41,13 @@ spec: secretKeyRef: name: worker-secret key: COMP_URL - - name: COMP_API_USER + - name: COMP_API_TOKEN valueFrom: secretKeyRef: name: worker-secret - key: COMP_API_USER - - name: COMP_API_USER_PASS + key: COMP_API_TOKEN + - name: BUCKET valueFrom: secretKeyRef: name: worker-secret - key: COMP_API_USER_PASS - - name: OBJ_STORAGE_BUCKET - valueFrom: - secretKeyRef: - name: worker-secret - key: OBJ_STORAGE_BUCKET - - name: OBJ_STORAGE_ACCESS - valueFrom: - secretKeyRef: - name: worker-secret - key: OBJ_STORAGE_ACCESS - - name: OBJ_STORAGE_SECRET - valueFrom: - secretKeyRef: - name: worker-secret - key: OBJ_STORAGE_SECRET + key: BUCKET diff --git a/distributed/docker-compose.yml b/distributed/docker-compose.yml index fc47a580..696eda8a 100755 --- a/distributed/docker-compose.yml +++ b/distributed/docker-compose.yml @@ -1,4 +1,4 @@ -version: '3.7' +version: "3.7" services: flask: build: @@ -7,16 +7,13 @@ services: image: "flask:${TAG}" ports: - 5050:5050 - environment: - - DEVELOP=${DEVELOP} - container_name: flask depends_on: - redis - distributed networks: worker_net: -#################################################### + #################################################### celerybase: build: context: ./ @@ -30,7 +27,7 @@ services: dockerfile: dockerfiles/Dockerfile image: "distributed:latest" -#################################################### + #################################################### redis: image: redis networks: @@ -41,4 +38,4 @@ services: #################################################### networks: - worker_net: \ No newline at end of file + worker_net: diff --git a/distributed/dockerfiles/Dockerfile b/distributed/dockerfiles/Dockerfile old mode 100644 new mode 100755 index 59aa82eb..0c710bb6 --- a/distributed/dockerfiles/Dockerfile +++ b/distributed/dockerfiles/Dockerfile @@ -5,10 +5,11 @@ RUN apt-get update && apt install libgl1-mesa-glx --yes RUN mkdir /home/distributed RUN mkdir /home/distributed/api -COPY requirements.txt home/distributed RUN conda update conda RUN conda config --append channels conda-forge RUN conda install "python>=3.7" pip +COPY requirements.txt home/distributed + WORKDIR /home/distributed \ No newline at end of file diff --git a/distributed/dockerfiles/Dockerfile.celerybase b/distributed/dockerfiles/Dockerfile.celerybase old mode 100644 new mode 100755 index 4dd83857..e8e3027e --- a/distributed/dockerfiles/Dockerfile.celerybase +++ b/distributed/dockerfiles/Dockerfile.celerybase @@ -1,5 +1,5 @@ ARG TAG -FROM comporg/distributed +FROM distributed ENV CELERY_BROKER_URL redis://redis-master/0 ENV CELERY_RESULT_BACKEND redis://redis-master/0 diff --git a/distributed/dockerfiles/Dockerfile.flask b/distributed/dockerfiles/Dockerfile.flask old mode 100644 new mode 100755 index 0f95c066..570202cc --- a/distributed/dockerfiles/Dockerfile.flask +++ b/distributed/dockerfiles/Dockerfile.flask @@ -1,5 +1,5 @@ ARG TAG -FROM comporg/distributed +FROM distributed LABEL build="flask" date="2018-06-13" diff --git a/distributed/dockerfiles/Dockerfile.tasks b/distributed/dockerfiles/Dockerfile.tasks old mode 100644 new mode 100755 index f75cd09a..c63ad286 --- a/distributed/dockerfiles/Dockerfile.tasks +++ b/distributed/dockerfiles/Dockerfile.tasks @@ -1,5 +1,5 @@ ARG TAG -FROM comporg/celerybase +FROM celerybase # install packages here # install packages necessary for celery, diff --git a/distributed/kubernetes/flower-service.yaml b/distributed/kubernetes/flower-service.yaml deleted file mode 100644 index 2dbe6dde..00000000 --- a/distributed/kubernetes/flower-service.yaml +++ /dev/null @@ -1,11 +0,0 @@ -apiVersion: v1 -kind: Service -metadata: - name: flower-monitor -spec: - type: LoadBalancer - ports: - - port: 8888 - targetPort: 8888 - selector: - app: flower-monitor \ No newline at end of file diff --git a/distributed/tasks_template.py b/distributed/tasks_template.py index af6599be..4d5c4171 100644 --- a/distributed/tasks_template.py +++ b/distributed/tasks_template.py @@ -4,10 +4,10 @@ from api.celery_app import celery_app, task_wrapper try: - import cs_config + from cs_config import functions except ImportError as ie: if os.environ.get("IS_FLASK", "False") == "True": - cs_config = None + functions = None else: raise ie @@ -17,7 +17,7 @@ ) @task_wrapper def inputs_get(self, meta_param_dict): - return cs_config.get_inputs(meta_param_dict) + return functions.get_inputs(meta_param_dict) @celery_app.task( @@ -25,7 +25,7 @@ def inputs_get(self, meta_param_dict): ) @task_wrapper def inputs_parse(self, meta_param_dict, adjustment, errors_warnings): - return cs_config.validate_inputs(meta_param_dict, adjustment, errors_warnings) + return functions.validate_inputs(meta_param_dict, adjustment, errors_warnings) @celery_app.task( @@ -36,4 +36,4 @@ def inputs_parse(self, meta_param_dict, adjustment, errors_warnings): ) @task_wrapper def sim(self, meta_param_dict, adjustment): - return cs_config.run_model(meta_param_dict, adjustment) + return functions.run_model(meta_param_dict, adjustment) From 7502351533017782ba7a903f1a3db52e34960905 Mon Sep 17 00:00:00 2001 From: hdoupe Date: Wed, 2 Oct 2019 17:11:56 -0400 Subject: [PATCH 4/8] Update django app for cs_storage use and new criteria --- Dockerfile.base | 2 +- requirements.txt | 2 +- templates/comp/not_ready.html | 80 +++++++++++++---------- templates/comp/outputs/v0/sim_detail.html | 2 +- webapp/apps/comp/asyncsubmit.py | 2 +- webapp/apps/comp/meta_parameters.py | 3 + webapp/apps/comp/models.py | 4 +- webapp/apps/comp/parser.py | 2 +- webapp/apps/comp/serializers.py | 2 +- webapp/apps/comp/tests/test_asyncviews.py | 3 +- webapp/apps/comp/views/api.py | 6 +- webapp/apps/comp/views/views.py | 27 ++++---- 12 files changed, 73 insertions(+), 62 deletions(-) diff --git a/Dockerfile.base b/Dockerfile.base index ab492733..fddfb0b7 100644 --- a/Dockerfile.base +++ b/Dockerfile.base @@ -11,7 +11,7 @@ ADD ./pytest.ini /code/pytest.ini # Install dependencies RUN conda update conda -RUN conda install -c conda-forge "python>=3.7.0" pip "paramtools>=0.5.4" "bokeh==1.2.0" --yes +RUN conda install -c conda-forge "python>=3.7.0" pip "paramtools>=0.5.4" "bokeh==1.2.0" gcsfs --yes RUN pip install -r requirements.txt # Add our code diff --git a/requirements.txt b/requirements.txt index deb703d4..87f45952 100644 --- a/requirements.txt +++ b/requirements.txt @@ -17,7 +17,7 @@ psycopg2-binary ipython markdown django-guardian -s3like==1.4.0 +cs-storage newrelic hashids django-rest-auth diff --git a/templates/comp/not_ready.html b/templates/comp/not_ready.html index 161ccd4a..8e95027a 100644 --- a/templates/comp/not_ready.html +++ b/templates/comp/not_ready.html @@ -1,52 +1,60 @@ -{% extends 'base.html' %} - -{% load static %} - -{% block content %} +{% extends 'base.html' %} {% load static %} {% block content %}
    -

    Please wait while calculations are running.

    +

    + Please wait while calculations are running. +

    -
    +
    -

    Estimated time remaining:

    +

    + Estimated time remaining: +

    -{% endblock %} - -{% block bottom_scripts %} - +{% endblock %} {% block bottom_scripts %} + {% endblock %} diff --git a/templates/comp/outputs/v0/sim_detail.html b/templates/comp/outputs/v0/sim_detail.html index 5eac330a..954b9990 100644 --- a/templates/comp/outputs/v0/sim_detail.html +++ b/templates/comp/outputs/v0/sim_detail.html @@ -107,7 +107,7 @@

    {{ x.title }}

  • {{object.inputs.pretty_meta_parameters}}
    • - {% for sect, jsonobj in object.inputs.inputs_file.items %} + {% for sect, jsonobj in object.inputs.custom_adjustment.items %}

    • Inputs for section: {{sect}}

      • diff --git a/webapp/apps/comp/asyncsubmit.py b/webapp/apps/comp/asyncsubmit.py index 9b43ef71..f2a52d02 100755 --- a/webapp/apps/comp/asyncsubmit.py +++ b/webapp/apps/comp/asyncsubmit.py @@ -72,7 +72,7 @@ def submit(self): meta_parameters=self.valid_meta_params, adjustment=result["adjustment"], errors_warnings=result["errors_warnings"], - inputs_file=result["inputs_file"], + custom_adjustment=result["custom_adjustment"], project=self.project, owner=getattr(self.request.user, "profile", None), job_id=result["job_id"], diff --git a/webapp/apps/comp/meta_parameters.py b/webapp/apps/comp/meta_parameters.py index e85f70ad..d231c752 100755 --- a/webapp/apps/comp/meta_parameters.py +++ b/webapp/apps/comp/meta_parameters.py @@ -46,6 +46,9 @@ class MetaParameter: def translate_to_django(meta_parameters: dict) -> MetaParameters: + + # TODO: handle schema + meta_parameters.pop("schema", None) new_mp = {} for name, data in meta_parameters.items(): if data["type"] == "str" and "choice" in data["validators"]: diff --git a/webapp/apps/comp/models.py b/webapp/apps/comp/models.py index b7750bbb..b8417112 100755 --- a/webapp/apps/comp/models.py +++ b/webapp/apps/comp/models.py @@ -58,7 +58,7 @@ class Inputs(models.Model): # Validated GUI input that has been parsed to have the correct data types, # or JSON reform uploaded as file - inputs_file = JSONField(default=dict, blank=True, null=True) + custom_adjustment = JSONField(default=dict, blank=True, null=True) errors_warnings = JSONField(default=None, blank=True, null=True) @@ -121,7 +121,7 @@ def deserialized_inputs(self): @property def display_params(self): - return self.inputs_file or self.adjustment + return self.custom_adjustment or self.adjustment @property def pretty_meta_parameters(self): diff --git a/webapp/apps/comp/parser.py b/webapp/apps/comp/parser.py index d0a859ad..69d8e284 100755 --- a/webapp/apps/comp/parser.py +++ b/webapp/apps/comp/parser.py @@ -85,5 +85,5 @@ def parse_parameters(self): "queue_length": queue_length, "adjustment": adjustment, "errors_warnings": errors_warnings, - "inputs_file": None, + "custom_adjustment": None, } diff --git a/webapp/apps/comp/serializers.py b/webapp/apps/comp/serializers.py index 883f80be..9d3722d9 100755 --- a/webapp/apps/comp/serializers.py +++ b/webapp/apps/comp/serializers.py @@ -56,7 +56,7 @@ class Meta: "hashid", "meta_parameters", "adjustment", - "inputs_file", + "custom_adjustment", "errors_warnings", "job_id", "status", diff --git a/webapp/apps/comp/tests/test_asyncviews.py b/webapp/apps/comp/tests/test_asyncviews.py index 169e919e..4f910c3a 100755 --- a/webapp/apps/comp/tests/test_asyncviews.py +++ b/webapp/apps/comp/tests/test_asyncviews.py @@ -408,7 +408,8 @@ def test_outputs_api(db, api_client, profile, password): # Test data errors return 400 user = User.objects.get(username="comp-api-user") - api_client.login(username=user.username, password="heyhey2222") + # api_client.login(username=user.username, password="heyhey2222") + api_client.credentials(HTTP_AUTHORIZATION=f"Token {user.auth_token.key}") assert ( api_client.put("/outputs/api/", data={"bad": "data"}, format="json").status_code == 400 diff --git a/webapp/apps/comp/views/api.py b/webapp/apps/comp/views/api.py index 11d20f19..3dfca0b5 100755 --- a/webapp/apps/comp/views/api.py +++ b/webapp/apps/comp/views/api.py @@ -11,7 +11,7 @@ from rest_framework.response import Response from rest_framework import status -import s3like +import cs_storage from webapp.apps.users.models import Project @@ -167,7 +167,7 @@ def get(self, request, *args, **kwargs): if self.object.outputs: data = sim.data outputs = data["outputs"]["outputs"] - data["outputs"] = s3like.read_from_s3like(outputs) + data["outputs"] = cs_storage.read(outputs) return Response(data, status=status.HTTP_200_OK) elif self.object.traceback is not None: return Response(sim.data, status=status.HTTP_200_OK) @@ -240,7 +240,7 @@ def put(self, request, *args, **kwargs): # successful run if data["status"] == "SUCCESS": inputs.errors_warnings = data["errors_warnings"] - inputs.inputs_file = data.get("inputs_file", None) + inputs.custom_adjustment = data.get("custom_adjustment", None) inputs.status = "SUCCESS" if is_valid(inputs) else "INVALID" inputs.save() if inputs.status == "SUCCESS": diff --git a/webapp/apps/comp/views/views.py b/webapp/apps/comp/views/views.py index e835fcc9..913b3a5c 100755 --- a/webapp/apps/comp/views/views.py +++ b/webapp/apps/comp/views/views.py @@ -25,7 +25,8 @@ from rest_framework.response import Response from rest_framework import status -import s3like +import gcsfs +import cs_storage from webapp.settings import DEBUG @@ -44,7 +45,7 @@ from .core import AbstractRouterView, InputsMixin, GetOutputsObjectMixin -OBJ_STORAGE_URL = os.environ.get("OBJ_STORAGE_URL") +BUCKET = os.environ.get("BUCKET") class InputsMixin: @@ -270,7 +271,7 @@ def render_v0(self, request): def render_v1(self, request): renderable = {"renderable": self.object.outputs["outputs"]["renderable"]} - outputs = s3like.read_from_s3like(renderable) + outputs = cs_storage.read(renderable) return render( request, "comp/outputs/v1/sim_detail.html", @@ -294,8 +295,8 @@ def is_from_file(self): return False def inputs_to_display(self): - if hasattr(self.object.inputs, "inputs_file"): - return json.dumps(self.object.inputs.inputs_file, indent=2) + if hasattr(self.object.inputs, "custom_adjustment"): + return json.dumps(self.object.inputs.custom_adjustment, indent=2) else: return "" @@ -342,15 +343,13 @@ def render_v1(self, request): if request.GET.get("raw_json", False): return self.render_json() zip_loc = self.object.outputs["outputs"]["downloadable"]["ziplocation"] - endpoint = s3like.OBJ_STORAGE_EDGE.replace("https://", "") - url = f"https://{s3like.OBJ_STORAGE_BUCKET}.{endpoint}/{zip_loc}" - zip_resp = requests.get(url) - zip_data = BytesIO(zip_resp.content) - resp = HttpResponse(zip_data.getvalue(), content_type="application/zip") - resp[ - "Content-Disposition" - ] = f"attachment; filename={self.object.zip_filename()}" - return resp + fs = gcsfs.GCSFileSystem(BUCKET) + with fs.open(f"{BUCKET}/{zip_loc}", "rb") as f: + resp = HttpResponse(f, content_type="application/zip") + resp[ + "Content-Disposition" + ] = f"attachment; filename={self.object.zip_filename()}" + return resp def render_json(self): raw_json = json.dumps( From c7d7b7cbdda337340c672a92661a74e23e769d62 Mon Sep 17 00:00:00 2001 From: hdoupe Date: Wed, 2 Oct 2019 17:12:33 -0400 Subject: [PATCH 5/8] Simplify docker-compose.yml file --- docker-compose.yml | 13 ++----------- 1 file changed, 2 insertions(+), 11 deletions(-) diff --git a/docker-compose.yml b/docker-compose.yml index 21bd2c1d..d94d51d8 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -1,12 +1,10 @@ -version: '3.7' +version: "3.7" services: db: image: postgres volumes: - postgres_data:/var/lib/postgresql/data/ - networks: - - distributed_worker_net webbase: build: context: ./ @@ -25,20 +23,13 @@ services: - DEBUG=True - WORKERS=${WORKERS}:5050 - LOCAL=True - - OBJ_STORAGE_EDGE=https://sfo2.cdn.digitaloceanspaces.com - - OBJ_STORAGE_BUCKET=compresults-dev + - BUCKET=cs-outputs-dev-1 ports: - "8000:8000" container_name: web depends_on: - db - webbase - networks: - - distributed_worker_net - -networks: - distributed_worker_net: - external: true volumes: postgres_data: From f6dddb7721cf044ba765f87043aedf0293d07d4b Mon Sep 17 00:00:00 2001 From: hdoupe Date: Wed, 2 Oct 2019 17:13:29 -0400 Subject: [PATCH 6/8] Update react client to ignore schema --- src/ParamTools.js | 8 ++++++++ static/js/inputs.js | 2 +- 2 files changed, 9 insertions(+), 1 deletion(-) diff --git a/src/ParamTools.js b/src/ParamTools.js index 2d265612..92ba1220 100644 --- a/src/ParamTools.js +++ b/src/ParamTools.js @@ -218,6 +218,11 @@ function labelsToString(valueObject) { } export function convertToFormik(data) { + // TODO: handle schema. + if ("schema" in data.meta_parameters) { + delete data.meta_parameters["schema"]; + } + var initialValues = { adjustment: {}, meta_parameters: {} }; var sects = {}; var section_1 = ""; @@ -251,6 +256,9 @@ export function convertToFormik(data) { ); } for (const [param, param_data] of Object.entries(params)) { + if (param === "schema") { + continue; + } param_data["form_fields"] = {}; // Group by major section, section_1 and section_2. if ("section_1" in param_data) { diff --git a/static/js/inputs.js b/static/js/inputs.js index 9ae2171f..2e3c8736 100644 --- a/static/js/inputs.js +++ b/static/js/inputs.js @@ -129,4 +129,4 @@ e.exports=function(e){return null!=e&&null!=e.constructor&&"function"==typeof e. * @license MIT * @namespace TraceKit */ -var Ae=Object(se.e)(),Me={_report:!1,_collectWindowErrors:!1,_computeStackTrace:!1,_linesOfContext:!1},Pe="?",Re=/^(?:[Uu]ncaught (?:exception: )?)?(?:((?:Eval|Internal|Range|Reference|Syntax|Type|URI|)Error): )?(.*)$/;function Fe(e,t){return Object.prototype.hasOwnProperty.call(e,t)}function 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A more practical [Python example](/api/python/) is also provided. - ## /[owner]/[title]/api/v1/ Used for creating simulations. Supports POST HTTP actions. - ### Create simulation ```bash @@ -21,16 +19,17 @@ POST hdoupe/Matchups/api/v1/ ``` **Example:** + ```json { - "meta_parameters": { - "use_full_data": true - }, - "adjustment": { - "matchup": { - "pitcher": "Max Scherzer" - } + "meta_parameters": { + "use_full_data": true + }, + "adjustment": { + "matchup": { + "pitcher": "Max Scherzer" } + } } ``` @@ -65,7 +64,7 @@ Allow: GET, POST, HEAD, OPTIONS "warnings": {} } }, - "inputs_file": null, + "custom_adjustment": null, "meta_parameters": { "use_full_data": true } @@ -107,7 +106,7 @@ Vary: Accept "pitcher": "Max Scherzer" } }, - "inputs_file": null, + "custom_adjustment": null, "errors_warnings": { "API": { "errors": {}, @@ -171,8 +170,8 @@ Used for viewing the inputs for a given model. Supports GET and POST HTTP actions. - ### View inputs: + ```bash GET hdoupe/Matchups/api/v1/inputs/ ``` @@ -259,7 +258,7 @@ Vary: Accept "AJ Ramos", "Aaron Altherr", "Aaron Barrett", - + ... ``` @@ -273,7 +272,7 @@ POST /hdoupe/Matchups/api/v1/inputs/ ```json { - "meta_parameters": {"use_full_data": true} + "meta_parameters": { "use_full_data": true } } ``` @@ -356,6 +355,5 @@ Vary: Accept ... ``` - [1]: https://github.com/compute-tooling/compute-studio-kit#comp-studio-toolkit [2]: https://httpie.org/ diff --git a/docs/docs/api/python.md b/docs/docs/api/python.md index 2d44036b..19161f6c 100755 --- a/docs/docs/api/python.md +++ b/docs/docs/api/python.md @@ -19,13 +19,13 @@ res = api.create( } ) -# output: +# output: # {'inputs': {'meta_parameters': {'year': 2020, # 'data_source': 'PUF', # 'use_full_sample': True}, # 'adjustment': {'policy': {'II_em': [{'year': 2020, 'value': 5000}]}, # 'behavior': {}}, -# 'inputs_file': {'policy': {'II_em': {'2020': 5000}}, 'behavior': {}}, +# 'custom_adjustment': {'policy': {'II_em': {'2020': 5000}}, 'behavior': {}}, # 'errors_warnings': {'policy': {'errors': {}, 'warnings': {}}, # 'behavior': {'errors': {}, 'warnings': {}}, # 'GUI': {'errors': {}, 'warnings': {}}, @@ -37,7 +37,7 @@ res = api.create( # 'gui_url': '/PSLmodels/Tax-Brain/41105/', # 'eta': 5.0, # 'model_pk': 41105} - + ``` Retrieve the result as a Pandas DataFrame: @@ -184,7 +184,7 @@ class API: resp = requests.post( self.sim_url, json={ - "adjustment": adjustment, + "adjustment": adjustment, "meta_parameters": meta_parameters }, headers=self.auth_header From 66eb0e3475080fc9505016a8d0682462c0e91dd4 Mon Sep 17 00:00:00 2001 From: hdoupe Date: Wed, 2 Oct 2019 17:15:04 -0400 Subject: [PATCH 8/8] Rename inputs_file to custom_adjustment --- .../comp/migrations/0016_auto_20191001_1236.py | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100755 webapp/apps/comp/migrations/0016_auto_20191001_1236.py diff --git a/webapp/apps/comp/migrations/0016_auto_20191001_1236.py b/webapp/apps/comp/migrations/0016_auto_20191001_1236.py new file mode 100755 index 00000000..f9145ce9 --- /dev/null +++ b/webapp/apps/comp/migrations/0016_auto_20191001_1236.py @@ -0,0 +1,14 @@ +# Generated by Django 2.2.5 on 2019-10-01 17:36 + +from django.db import migrations + + +class Migration(migrations.Migration): + + dependencies = [("comp", "0015_auto_20190928_0840")] + + operations = [ + migrations.RenameField( + model_name="inputs", old_name="inputs_file", new_name="custom_adjustment" + ) + ]