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Possible PyRoot issue in Sonoma 14.7 #267

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trtomei opened this issue Oct 2, 2024 · 0 comments
Open
1 task done

Possible PyRoot issue in Sonoma 14.7 #267

trtomei opened this issue Oct 2, 2024 · 0 comments
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bug Something isn't working

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@trtomei
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trtomei commented Oct 2, 2024

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

Dearest,

Trying to use PyRoot in Conda, macOS Sonoma seems to not be working at the moment. My environment:

  • Apple M2 Pro
  • Version 14.7 (23H124)
  • Command Line Tools for Xcode 16.0

Error

$ python
Python 3.11.10 | packaged by conda-forge | (main, Sep 30 2024, 17:58:42) [Clang 17.0.6 ] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import ROOT as rt
In module 'Darwin':
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/libkern/arm/OSByteOrder.h:14:1: error: '_OSSwapInt16' has different definitions in different modules; definition in module 'Darwin.libkern.OSByteOrder'
      first difference is return type is 'uint16_t' (aka 'unsigned short')
uint16_t
^~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/libkern/arm/_OSByteOrder.h:49:1: note: but in 'DarwinFoundation.OSByteOrder' found different return type '__uint16_t' (aka 'unsigned short')
__uint16_t
^~~~~~~~~~
In module 'Darwin':
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/libkern/arm/OSByteOrder.h:24:1: error: '_OSSwapInt32' has different definitions in different modules; definition in module 'Darwin.libkern.OSByteOrder'
      first difference is return type is 'uint32_t' (aka 'unsigned int')
uint32_t
^~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/libkern/arm/_OSByteOrder.h:59:1: note: but in 'DarwinFoundation.OSByteOrder' found different return type '__uint32_t' (aka 'unsigned int')
__uint32_t
^~~~~~~~~~
In module 'Darwin':
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/libkern/arm/OSByteOrder.h:40:1: error: '_OSSwapInt64' has different definitions in different modules; definition in module 'Darwin.libkern.OSByteOrder'
      first difference is return type is 'uint64_t' (aka 'unsigned long long')
uint64_t
^~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/libkern/arm/_OSByteOrder.h:75:1: note: but in 'DarwinFoundation.OSByteOrder' found different return type '__uint64_t' (aka 'unsigned long long')
__uint64_t
^~~~~~~~~~
>>>

I added the results for a Python 3.11 environment, but the same error appears in a Python 3.12 environment.

Cheers,
Thiago

Installed packages

# Name                    Version                   Build  Channel
afterimage                1.21              h908a25a_1005    conda-forge
anyio                     4.6.0              pyhd8ed1ab_1    conda-forge
appnope                   0.1.4              pyhd8ed1ab_0    conda-forge
argon2-cffi               23.1.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py311h460d6c5_5    conda-forge
arrow                     1.3.0              pyhd8ed1ab_0    conda-forge
asttokens                 2.4.1              pyhd8ed1ab_0    conda-forge
async-lru                 2.0.4              pyhd8ed1ab_0    conda-forge
atk-1.0                   2.38.0               hd03087b_2    conda-forge
attrs                     24.2.0             pyh71513ae_0    conda-forge
babel                     2.14.0             pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.12.3             pyha770c72_0    conda-forge
bleach                    6.1.0              pyhd8ed1ab_0    conda-forge
brotli-python             1.1.0           py311ha891d26_1    conda-forge
bzip2                     1.0.8                h99b78c6_7    conda-forge
c-ares                    1.33.1               hd74edd7_0    conda-forge
c-compiler                1.7.0                h6aa9301_1    conda-forge
ca-certificates           2024.8.30            hf0a4a13_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cairo                     1.18.0               hb4a6bf7_3    conda-forge
cctools                   986                  h4faf515_3    conda-forge
cctools_osx-arm64         986                  h670d6a2_3    conda-forge
certifi                   2024.8.30          pyhd8ed1ab_0    conda-forge
cffi                      1.17.1          py311h3a79f62_0    conda-forge
cfitsio                   4.3.1                h808cd33_0    conda-forge
charset-normalizer        3.3.2              pyhd8ed1ab_0    conda-forge
clang                     16.0.6          default_h675cc0c_13    conda-forge
clang-16                  16.0.6          default_h5c12605_13    conda-forge
clang_impl_osx-arm64      16.0.6              hc421ffc_19    conda-forge
clang_osx-arm64           16.0.6              h54d7cd3_19    conda-forge
clangxx                   16.0.6          default_h675cc0c_13    conda-forge
clangxx_impl_osx-arm64    16.0.6              hcd7bac0_19    conda-forge
clangxx_osx-arm64         16.0.6              h54d7cd3_19    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
comm                      0.2.2              pyhd8ed1ab_0    conda-forge
compiler-rt               16.0.6               h3808999_2    conda-forge
compiler-rt_osx-arm64     16.0.6               h3808999_2    conda-forge
compilers                 1.7.0                hce30654_1    conda-forge
cxx-compiler              1.7.0                h2ffa867_1    conda-forge
davix                     0.8.6                h5c138a1_0    conda-forge
debugpy                   1.8.5           py311hb9542d7_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
exceptiongroup            1.2.2              pyhd8ed1ab_0    conda-forge
executing                 2.1.0              pyhd8ed1ab_0    conda-forge
expat                     2.6.3                hf9b8971_0    conda-forge
fftw                      3.3.10          nompi_h6637ab6_110    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_3    conda-forge
fontconfig                2.14.2               h82840c6_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fortran-compiler          1.7.0                hafb19e3_1    conda-forge
fqdn                      1.5.1              pyhd8ed1ab_0    conda-forge
freetype                  2.12.1               hadb7bae_2    conda-forge
fribidi                   1.0.10               h27ca646_0    conda-forge
ftgl                      2.4.0                hccfd508_0    conda-forge
gdk-pixbuf                2.42.12              h7ddc832_0    conda-forge
gfortran                  12.3.0               h1ca8e4b_1    conda-forge
gfortran_impl_osx-arm64   12.3.0               hbbb9e1e_1    conda-forge
gfortran_osx-arm64        12.3.0               h57527a5_1    conda-forge
giflib                    5.2.2                h93a5062_0    conda-forge
gl2ps                     1.4.2                hc97c1ff_1    conda-forge
glew                      2.1.0                h9f76cd9_2    conda-forge
gmp                       6.3.0                h7bae524_2    conda-forge
graphite2                 1.3.13            hebf3989_1003    conda-forge
graphviz                  9.0.0                h54e2d63_1    conda-forge
gsl                       2.7                  h6e638da_0    conda-forge
gsoap                     2.8.123              hfb11b17_0    conda-forge
gtest                     1.14.0               h420ef59_2    conda-forge
gtk2                      2.24.33              h91d5085_5    conda-forge
gts                       0.7.6                he42f4ea_4    conda-forge
h11                       0.14.0             pyhd8ed1ab_0    conda-forge
h2                        4.1.0              pyhd8ed1ab_0    conda-forge
harfbuzz                  9.0.0                h997cde5_1    conda-forge
hpack                     4.0.0              pyh9f0ad1d_0    conda-forge
httpcore                  1.0.6              pyhd8ed1ab_0    conda-forge
httpx                     0.27.2             pyhd8ed1ab_0    conda-forge
hyperframe                6.0.1              pyhd8ed1ab_0    conda-forge
icu                       75.1                 hfee45f7_0    conda-forge
idna                      3.10               pyhd8ed1ab_0    conda-forge
importlib-metadata        8.5.0              pyha770c72_0    conda-forge
importlib_metadata        8.5.0                hd8ed1ab_0    conda-forge
importlib_resources       6.4.5              pyhd8ed1ab_0    conda-forge
ipykernel                 6.29.5             pyh57ce528_0    conda-forge
ipyparallel               8.8.0              pyhd8ed1ab_0    conda-forge
ipython                   8.27.0             pyh707e725_0    conda-forge
isl                       0.25                 h9a09cb3_0    conda-forge
isoduration               20.11.0            pyhd8ed1ab_0    conda-forge
jedi                      0.19.1             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.4              pyhd8ed1ab_0    conda-forge
json5                     0.9.25             pyhd8ed1ab_0    conda-forge
jsonpointer               3.0.0           py311h267d04e_1    conda-forge
jsonschema                4.23.0             pyhd8ed1ab_0    conda-forge
jsonschema-specifications 2023.12.1          pyhd8ed1ab_0    conda-forge
jsonschema-with-format-nongpl 4.23.0               hd8ed1ab_0    conda-forge
jupyter-lsp               2.2.5              pyhd8ed1ab_0    conda-forge
jupyter_client            8.6.3              pyhd8ed1ab_0    conda-forge
jupyter_core              5.7.2              pyh31011fe_1    conda-forge
jupyter_events            0.10.0             pyhd8ed1ab_0    conda-forge
jupyter_server            2.14.2             pyhd8ed1ab_0    conda-forge
jupyter_server_terminals  0.5.3              pyhd8ed1ab_0    conda-forge
jupyterlab                4.2.5              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.3.0              pyhd8ed1ab_1    conda-forge
jupyterlab_server         2.27.3             pyhd8ed1ab_0    conda-forge
krb5                      1.21.3               h237132a_0    conda-forge
ld64                      711                  h634c8be_3    conda-forge
ld64_osx-arm64            711                  h4c89ff5_3    conda-forge
lerc                      4.0.0                h9a09cb3_0    conda-forge
libblas                   3.9.0           24_osxarm64_openblas    conda-forge
libcblas                  3.9.0           24_osxarm64_openblas    conda-forge
libclang-cpp16            16.0.6          default_h5c12605_13    conda-forge
libcurl                   8.10.1               h13a7ad3_0    conda-forge
libcxx                    16.0.6               he144fb7_2    conda-forge
libcxx-devel              16.0.6               h86353a2_2    conda-forge
libdeflate                1.21                 h99b78c6_0    conda-forge
libedit                   3.1.20191231         hc8eb9b7_2    conda-forge
libev                     4.33                 h93a5062_2    conda-forge
libexpat                  2.6.3                hf9b8971_0    conda-forge
libffi                    3.4.2                h3422bc3_5    conda-forge
libgd                     2.3.3               hac1b3a8_10    conda-forge
libgfortran               5.0.0           13_2_0_hd922786_3    conda-forge
libgfortran-devel_osx-arm64 12.3.0               hc62be1c_3    conda-forge
libgfortran5              13.2.0               hf226fd6_3    conda-forge
libglib                   2.82.1               h4821c08_0    conda-forge
libhwloc                  2.11.1          default_h7685b71_1000    conda-forge
libiconv                  1.17                 h0d3ecfb_2    conda-forge
libintl                   0.22.5               h8414b35_3    conda-forge
libjpeg-turbo             3.0.0                hb547adb_1    conda-forge
liblapack                 3.9.0           24_osxarm64_openblas    conda-forge
libllvm14                 14.0.6               hd1a9a77_4    conda-forge
libllvm16                 16.0.6               haab561b_3    conda-forge
libnghttp2                1.58.0               ha4dd798_1    conda-forge
libopenblas               0.3.27          openmp_h517c56d_1    conda-forge
libpng                    1.6.44               hc14010f_0    conda-forge
librsvg                   2.58.4               h40956f1_0    conda-forge
libsodium                 1.0.18               h27ca646_1    conda-forge
libsqlite                 3.46.1               hc14010f_0    conda-forge
libssh2                   1.11.0               h7a5bd25_0    conda-forge
libtiff                   4.6.0                hf8409c0_4    conda-forge
libwebp-base              1.4.0                h93a5062_0    conda-forge
libxcrypt                 4.4.36               h93a5062_1    conda-forge
libxml2                   2.12.7               h01dff8b_4    conda-forge
libzlib                   1.3.1                hfb2fe0b_1    conda-forge
llvm-openmp               19.1.0               hba312e6_0    conda-forge
llvm-tools                16.0.6               haab561b_3    conda-forge
llvmlite                  0.43.0          py311h02e79e2_0    conda-forge
lz4-c                     1.9.4                hb7217d7_0    conda-forge
markupsafe                2.1.5           py311h460d6c5_1    conda-forge
matplotlib-inline         0.1.7              pyhd8ed1ab_0    conda-forge
metakernel                0.30.2             pyhd8ed1ab_0    conda-forge
mistune                   3.0.2              pyhd8ed1ab_0    conda-forge
mpc                       1.3.1                h8f1351a_1    conda-forge
mpfr                      4.2.1                hb693164_3    conda-forge
nbclient                  0.10.0             pyhd8ed1ab_0    conda-forge
nbconvert-core            7.16.4             pyhd8ed1ab_1    conda-forge
nbformat                  5.10.4             pyhd8ed1ab_0    conda-forge
ncurses                   6.5                  h7bae524_1    conda-forge
nest-asyncio              1.6.0              pyhd8ed1ab_0    conda-forge
nlohmann_json             3.11.2               h2e04ded_0    conda-forge
notebook                  7.2.2              pyhd8ed1ab_0    conda-forge
notebook-shim             0.2.4              pyhd8ed1ab_0    conda-forge
numba                     0.60.0          py311h9506ed5_0    conda-forge
numpy                     1.26.4          py311h7125741_0    conda-forge
openssl                   3.3.2                h8359307_0    conda-forge
overrides                 7.7.0              pyhd8ed1ab_0    conda-forge
packaging                 24.1               pyhd8ed1ab_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
pango                     1.54.0               h9ee27a3_2    conda-forge
parso                     0.8.4              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 hbdafb3b_0    conda-forge
pcre2                     10.44                h297a79d_2    conda-forge
pexpect                   4.9.0              pyhd8ed1ab_0    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       24.2               pyh8b19718_1    conda-forge
pixman                    0.43.4               hebf3989_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_1    conda-forge
platformdirs              4.3.6              pyhd8ed1ab_0    conda-forge
portalocker               2.10.1          py311h267d04e_0    conda-forge
prometheus_client         0.21.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.48             pyha770c72_0    conda-forge
psutil                    6.0.0           py311h460d6c5_1    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.3              pyhd8ed1ab_0    conda-forge
pycparser                 2.22               pyhd8ed1ab_0    conda-forge
pygments                  2.18.0             pyhd8ed1ab_0    conda-forge
pyobjc-core               10.3.1          py311h09e6bbd_1    conda-forge
pyobjc-framework-cocoa    10.3.1          py311h09e6bbd_1    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pythia8                   8.311           py311h02e79e2_3    conda-forge
python                    3.11.10         h739c21a_2_cpython    conda-forge
python-dateutil           2.9.0              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.20.0             pyhd8ed1ab_0    conda-forge
python-json-logger        2.0.7              pyhd8ed1ab_0    conda-forge
python_abi                3.11                    5_cp311    conda-forge
pytz                      2024.2             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0.2           py311h460d6c5_1    conda-forge
pyzmq                     26.1.1          py311h9bed540_0    conda-forge
readline                  8.2                  h92ec313_1    conda-forge
referencing               0.35.1             pyhd8ed1ab_0    conda-forge
requests                  2.32.3             pyhd8ed1ab_0    conda-forge
rfc3339-validator         0.1.4              pyhd8ed1ab_0    conda-forge
rfc3986-validator         0.1.1              pyh9f0ad1d_0    conda-forge
root                      6.30.4          py311h66530a1_0    conda-forge
root_base                 6.30.4          py311hca8578e_0    conda-forge
rpds-py                   0.20.0          py311h481aa64_1    conda-forge
scitokens-cpp             1.1.1                h309bd50_0    conda-forge
send2trash                1.8.3              pyh31c8845_0    conda-forge
setuptools                75.1.0             pyhd8ed1ab_0    conda-forge
sigtool                   0.1.3                h44b9a77_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sniffio                   1.3.1              pyhd8ed1ab_0    conda-forge
soupsieve                 2.5                pyhd8ed1ab_1    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
tapi                      1100.0.11            he4954df_0    conda-forge
tbb                       2021.12.0            h420ef59_3    conda-forge
terminado                 0.18.1             pyh31c8845_0    conda-forge
tinycss2                  1.3.0              pyhd8ed1ab_0    conda-forge
tk                        8.6.13               h5083fa2_1    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.4.1           py311h460d6c5_1    conda-forge
tqdm                      4.66.5             pyhd8ed1ab_0    conda-forge
traitlets                 5.14.3             pyhd8ed1ab_0    conda-forge
types-python-dateutil     2.9.0.20240906     pyhd8ed1ab_0    conda-forge
typing-extensions         4.12.2               hd8ed1ab_0    conda-forge
typing_extensions         4.12.2             pyha770c72_0    conda-forge
typing_utils              0.1.0              pyhd8ed1ab_0    conda-forge
tzdata                    2024a                h8827d51_1    conda-forge
uri-template              1.3.0              pyhd8ed1ab_0    conda-forge
urllib3                   2.2.3              pyhd8ed1ab_0    conda-forge
vdt                       0.4.4                h13dd4ca_0    conda-forge
vector-classes            1.4.4                h2ffa867_0    conda-forge
wcwidth                   0.2.13             pyhd8ed1ab_0    conda-forge
webcolors                 24.8.0             pyhd8ed1ab_0    conda-forge
webencodings              0.5.1              pyhd8ed1ab_2    conda-forge
websocket-client          1.8.0              pyhd8ed1ab_0    conda-forge
wheel                     0.44.0             pyhd8ed1ab_0    conda-forge
xrootd                    5.7.0           py311h9f63cb5_0    conda-forge
xxhash                    0.8.2                hb547adb_0    conda-forge
xz                        5.2.6                h57fd34a_0    conda-forge
yaml                      0.2.5                h3422bc3_2    conda-forge
zeromq                    4.3.5                hcc0f68c_4    conda-forge
zipp                      3.20.2             pyhd8ed1ab_0    conda-forge
zlib                      1.3.1                hfb2fe0b_1    conda-forge
zstandard                 0.23.0          py311ha60cc69_1    conda-forge
zstd                      1.5.6                hb46c0d2_0    conda-forge

Environment info

active environment : CONDAroot311
    active env location : /Users/trtomei/unsynced/miniconda3/envs/CONDAroot311
            shell level : 1
       user config file : /Users/trtomei/.condarc
 populated config files : /Users/trtomei/.condarc
          conda version : 23.9.0
    conda-build version : not installed
         python version : 3.10.13.final.0
       virtual packages : __archspec=1=arm64
                          __osx=14.7=0
                          __unix=0=0
       base environment : /Users/trtomei/unsynced/miniconda3  (writable)
      conda av data dir : /Users/trtomei/unsynced/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/osx-arm64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/osx-arm64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-arm64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://conda.anaconda.org/pytorch/osx-arm64
                          https://conda.anaconda.org/pytorch/noarch
          package cache : /Users/trtomei/unsynced/miniconda3/pkgs
                          /Users/trtomei/.conda/pkgs
       envs directories : /Users/trtomei/unsynced/miniconda3/envs
                          /Users/trtomei/.conda/envs
               platform : osx-arm64
             user-agent : conda/23.9.0 requests/2.32.3 CPython/3.10.13 Darwin/23.6.0 OSX/14.7
                UID:GID : 501:20
             netrc file : None
           offline mode : False
@trtomei trtomei added the bug Something isn't working label Oct 2, 2024
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