From e22475166d8ff5b64aee699715b20fca292a56b7 Mon Sep 17 00:00:00 2001 From: ejolly Date: Thu, 28 Oct 2021 15:58:46 -0400 Subject: [PATCH] fix #396, fix #398, remove uneccesary files for doc build --- .readthedocs.yml | 24 ------------------- .../nltools.analysis.Roc.calculate.examples | 0 .../nltools.analysis.Roc.examples | 0 .../nltools.analysis.Roc.plot.examples | 0 .../nltools.analysis.Roc.summary.examples | 0 ....cross_validation.KFoldStratified.examples | 0 ..._validation.KFoldStratified.split.examples | 0 .../nltools.cross_validation.examples | 0 .../nltools.cross_validation.set_cv.examples | 0 .../nltools.data.Adjacency.append.examples | 0 .../nltools.data.Adjacency.bootstrap.examples | 0 .../nltools.data.Adjacency.copy.examples | 0 .../nltools.data.Adjacency.distance.examples | 0 ....Adjacency.distance_to_similarity.examples | 0 .../nltools.data.Adjacency.examples | 0 .../nltools.data.Adjacency.isc.examples | 0 .../nltools.data.Adjacency.isempty.examples | 0 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100644 index e69de29b..00000000 diff --git a/docs/backreferences/nltools.utils.get_resource_path.examples b/docs/backreferences/nltools.utils.get_resource_path.examples deleted file mode 100644 index e69de29b..00000000 diff --git a/docs/backreferences/nltools.utils.set_algorithm.examples b/docs/backreferences/nltools.utils.set_algorithm.examples deleted file mode 100644 index e69de29b..00000000 diff --git a/docs/backreferences/nltools.utils.set_decomposition_algorithm.examples b/docs/backreferences/nltools.utils.set_decomposition_algorithm.examples deleted file mode 100644 index e69de29b..00000000 diff --git a/docs/environment.yml b/docs/environment.yml deleted file mode 100644 index 1de0f9cd..00000000 --- a/docs/environment.yml +++ /dev/null @@ -1,15 +0,0 @@ -channels: - - conda-forge - -name: - - nltools >= 0.4.2 - -dependencies: - - python >= 3.7 - - pip: - - sphinx >= 3.1.2 - - sphinx-gallery - - sphinxcontrib-napoleon - - sphinx_bootstrap_theme - - networkx - diff --git a/docs/sphinx_requirements.txt b/docs/sphinx_requirements.txt deleted file mode 100644 index 68346481..00000000 --- a/docs/sphinx_requirements.txt +++ /dev/null @@ -1,7 +0,0 @@ -sphinx >= 3.1.2 -sphinx-gallery -sphinxcontrib-napoleon -sphinx_bootstrap_theme -networkx -sphinxcontrib.yt >= 0.2.2 - diff --git a/nltools/cross_validation.py b/nltools/cross_validation.py index c03bf09c..ca71408d 100644 --- a/nltools/cross_validation.py +++ b/nltools/cross_validation.py @@ -39,7 +39,9 @@ class KFoldStratified(_BaseKFold): """ def __init__(self, n_splits=3, shuffle=False, random_state=None): - super(KFoldStratified, self).__init__(n_splits, shuffle, random_state) + super(KFoldStratified, self).__init__( + n_splits=n_splits, shuffle=shuffle, random_state=random_state + ) def _make_test_folds(self, X, y=None, groups=None): y = pd.DataFrame(y) diff --git a/requirements.txt b/requirements.txt index 01694377..a8d8cd85 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,7 @@ nibabel>=3.0.1 scikit-learn>=0.21.0 nilearn>=0.6.0 - pandas >= 1.1.0,<1.2 + pandas >= 1.1.0 numpy>=1.9 seaborn>=0.7.0 matplotlib>=2.2.0