diff --git a/constellations/__init__.py b/constellations/__init__.py index ff5ec0f..4179d34 100644 --- a/constellations/__init__.py +++ b/constellations/__init__.py @@ -1,3 +1,3 @@ _program = "constellations" -__version__ = "v0.1.7" +__version__ = "v0.1.8" diff --git a/constellations/definitions/cBA.2.json b/constellations/definitions/cBA.2.json index 41d4ef2..9da14ae 100644 --- a/constellations/definitions/cBA.2.json +++ b/constellations/definitions/cBA.2.json @@ -29,7 +29,6 @@ "orf1ab:SGF3675-", "nuc:C10198T", "nuc:G10447A", - "nuc:C15714T", "nuc:C12880T", "nuc:C15714T", "orf1ab:R5716C", @@ -54,7 +53,7 @@ "note": "Unique mutations for sublineage", "rules": { "default": { - "min_alt": 28, + "min_alt": 27, "max_ref": 3, "spike:Q493":"alt", "n:P151":"ref", diff --git a/constellations/definitions/cBA.3.json b/constellations/definitions/cBA.3.json index 966c58a..9686e81 100644 --- a/constellations/definitions/cBA.3.json +++ b/constellations/definitions/cBA.3.json @@ -27,7 +27,6 @@ "nuc:C11235T", "nuc:C12880T", "nuc:C15714T", - "orf1ab:I5967V", "spike:A67V", "spike:Q493R", "del:21765:6", @@ -44,7 +43,7 @@ "note": "Unique mutations for sublineage", "rules": { "default": { - "min_alt": 14, + "min_alt": 13, "max_ref": 2 }, "Probable": { diff --git a/constellations/definitions/cBA.4.json b/constellations/definitions/cBA.4.json index c5ba754..797f1f6 100644 --- a/constellations/definitions/cBA.4.json +++ b/constellations/definitions/cBA.4.json @@ -34,7 +34,6 @@ "nuc:A20055G", "spike:T19I", "s:HV69-", - "nuc:T22200G", "spike:V213G", "spike:S371F", "spike:T376A", @@ -54,7 +53,7 @@ "note": "Unique mutations for sublineage", "rules": { "default": { - "min_alt": 30, + "min_alt": 29, "max_ref": 5, "m:D3N":"ref", "s:Q493":"ref", diff --git a/constellations/definitions/cBA.5.json b/constellations/definitions/cBA.5.json index e0aaa10..d9665f7 100644 --- a/constellations/definitions/cBA.5.json +++ b/constellations/definitions/cBA.5.json @@ -34,7 +34,6 @@ "nuc:A20055G", "spike:T19I", "s:HV69-", - "nuc:T22200G", "spike:V213G", "spike:S371F", "spike:T376A", @@ -51,7 +50,7 @@ "note": "Unique mutations for sublineage", "rules": { "default": { - "min_alt": 28, + "min_alt": 27, "max_ref": 5, "s:Q493":"ref", "nuc:C26858":"ref", diff --git a/constellations/definitions/cXE-parent2.json b/constellations/definitions/cXE-parent2.json index 9dcaab6..a96dff7 100644 --- a/constellations/definitions/cXE-parent2.json +++ b/constellations/definitions/cXE-parent2.json @@ -19,7 +19,6 @@ "sites": [ "nuc:C15714T", "nuc:C12880T", - "nuc:C15714T", "orf1ab:R5716C", "orf1ab:T6564I", "nuc:A20055G", @@ -39,7 +38,7 @@ ], "rules": { "default": { - "min_alt": 9, + "min_alt": 8, "max_ref": 3 } } diff --git a/constellations/definitions/cXE.json b/constellations/definitions/cXE.json index 91c1eca..9896cd5 100644 --- a/constellations/definitions/cXE.json +++ b/constellations/definitions/cXE.json @@ -22,9 +22,10 @@ "sites": [ "nuc:C3241T", "nuc:T5386G", - "nuc:C14599T", + "nuc:C14599T", "nuc:C12880T", - "nuc:A29510C" + "nuc:A29510C", + "nuc:C14599T" ], "rules": { "min_alt": 2,