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LY.1 + ORF1a:S1189R (278 mostly Texas USA) #2795

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Fearuncle opened this issue Oct 1, 2024 · 6 comments
Open

LY.1 + ORF1a:S1189R (278 mostly Texas USA) #2795

Fearuncle opened this issue Oct 1, 2024 · 6 comments

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@Fearuncle
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from: sars-cov-2-variants/lineage-proposals#1983
image
tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_293f5_c2b4d0.json?f_userOrOld=uploaded%20sample

First seq: 2024-06-09
Most Recent: 2024-09-11

Gisaid Query: !C6384T & C3832A & T20367C
@Fearuncle Fearuncle changed the title LY.1 + ORF1a:S1189R (157 mostly Texas USA) LY.1 + ORF1a:S1189R (178 mostly Texas USA) Oct 3, 2024
@Fearuncle Fearuncle changed the title LY.1 + ORF1a:S1189R (178 mostly Texas USA) LY.1 + ORF1a:S1189R (179 mostly Texas USA) Oct 5, 2024
@Fearuncle Fearuncle changed the title LY.1 + ORF1a:S1189R (179 mostly Texas USA) LY.1 + ORF1a:S1189R (188 mostly Texas USA) Oct 10, 2024
@DailyCovidCases
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Please designate this branch @corneliusroemer

@FedeGueli
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Please designate this branch @corneliusroemer

still very local, it just entered some Canadian cluster hence showing advantage

@Fearuncle Fearuncle changed the title LY.1 + ORF1a:S1189R (188 mostly Texas USA) LY.1 + ORF1a:S1189R (216 mostly Texas USA) Oct 27, 2024
@DailyCovidCases
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Now 238 seqs
Source: https://cov-spectrum.org/explore/World/AllSamples/Y2024/variants?variantQuery=%21C6384T+%26+C3832A+%26+T20367C&

@FedeGueli
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FedeGueli commented Nov 16, 2024 •
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Now 238 seqs
246 with -C6384T,C3832A, T20367C , 31/246 sampled in October but mainly in Canadian clusters

@Fearuncle Fearuncle changed the title LY.1 + ORF1a:S1189R (216 mostly Texas USA) LY.1 + ORF1a:S1189R (243 mostly Texas USA) Nov 18, 2024
@DailyCovidCases
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DailyCovidCases commented Nov 19, 2024 •
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246 seqs @corneliusroemer rapid designation needed:
Screenshot (90)

@FedeGueli
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FedeGueli commented Nov 19, 2024 •
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58 Aus, US , Can wrong issue

@Fearuncle Fearuncle changed the title LY.1 + ORF1a:S1189R (243 mostly Texas USA) LY.1 + ORF1a:S1189R (277 mostly Texas USA) Nov 21, 2024
@Fearuncle Fearuncle changed the title LY.1 + ORF1a:S1189R (277 mostly Texas USA) LY.1 + ORF1a:S1189R (278 mostly Texas USA) Nov 26, 2024
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3 participants
@Fearuncle @FedeGueli @DailyCovidCases