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KP.3.1.1+S:F186S(79 seqs, >10 places) #2801

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xz-keg opened this issue Oct 9, 2024 · 5 comments
Open

KP.3.1.1+S:F186S(79 seqs, >10 places) #2801

xz-keg opened this issue Oct 9, 2024 · 5 comments

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@xz-keg
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xz-keg commented Oct 9, 2024

From sars-cov-2-variants/lineage-proposals#2084

Recently I train a GPT model on viral evolution for SARS-Cov-2 using data up to early-JN.1, and T22119C-S:F186S is its top prediction when inferenced on KP.3.1.1-backbone.
Now there's really a S:F186S sub-branch emerging.

KP.3.1.1+T22119C(S:F186S)

GISAID query: T22119C, A13121T, -25595, -28612, -6536
No. of seqs: 53(Ireland 14 Portugal 4 UK 9(Scotland) Slovenia 1 Spain 8 Sweden 11 USA 7(AK,NY,UT, GBW from UK))

First: EPI_ISL_19296890, Spain, 2024-5-22
Latest: EPI_ISL_19451861, GBW from UK, 2024-9-22

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@FedeGueli
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58 France Ireland

@xz-keg
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xz-keg commented Oct 16, 2024

60, Italy

@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(53 seqs, 9 places) KP.3.1.1+S:F186S(60 seqs, >10 places) Oct 16, 2024
@FedeGueli
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One of the fastest Kp.3.1.1 descendants , along with 435S D111N and 572I one of the few beneficial spike mutations for Kp.3.1.1

@xz-keg
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xz-keg commented Oct 21, 2024

64, Canary Islands

@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(60 seqs, >10 places) KP.3.1.1+S:F186S(64 seqs, >10 places) Oct 21, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(64 seqs, >10 places) KP.3.1.1+S:F186S(71 seqs, >10 places) Oct 27, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(71 seqs, >10 places) KP.3.1.1+S:F186S(75 seqs, >10 places) Nov 5, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(75 seqs, >10 places) KP.3.1.1+S:F186S(76 seqs, >10 places) Nov 10, 2024
@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(76 seqs, >10 places) KP.3.1.1+S:F186S(77 seqs, >10 places) Nov 15, 2024
@FedeGueli
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seems faster now

@xz-keg xz-keg changed the title KP.3.1.1+S:F186S(77 seqs, >10 places) KP.3.1.1+S:F186S(79 seqs, >10 places) Nov 22, 2024
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