From bfa0fbc206d1f9e4fbd234f6b6680b0f9bcb84a2 Mon Sep 17 00:00:00 2001
From: Nathan Painchaud <nathan.painchaud@insa-lyon.fr>
Date: Mon, 27 Jan 2025 14:46:01 +0100
Subject: [PATCH] Remove outdated experiment config for XGBoost baseline

---
 didactic/config/experiment/records-xgb.yaml | 119 --------------------
 1 file changed, 119 deletions(-)
 delete mode 100644 didactic/config/experiment/records-xgb.yaml

diff --git a/didactic/config/experiment/records-xgb.yaml b/didactic/config/experiment/records-xgb.yaml
deleted file mode 100644
index 1c07b72..0000000
--- a/didactic/config/experiment/records-xgb.yaml
+++ /dev/null
@@ -1,119 +0,0 @@
-# @package _global_
-
-defaults:
-  - /task/data: tab-all
-  - /data: cardinal
-
-data:
-  patients_kwargs:
-    views: [A4C, A2C]   # Needed to avoid warnings about missing views when defaulting to all views (including A3C)
-  process_patient_kwargs:
-    tabular_attrs:
-      - ef
-      - edv
-      - esv
-      - a4c_ed_sc_min
-      - a4c_ed_sc_max
-      - a4c_ed_lc_min
-      - a4c_ed_lc_max
-      - a2c_ed_ic_min
-      - a2c_ed_ic_max
-      - a2c_ed_ac_min
-      - a2c_ed_ac_max
-      - age
-      - sex
-      - bmi
-      - hf
-      - cad
-      - pad
-      - stroke
-      - tobacco
-      - diabetes
-      - dyslipidemia
-      - etiology
-      - ddd
-      - bradycardic
-      - ace_inhibitor
-      - arb
-      - tz_diuretic
-      - central_acting
-      - beta_blocker
-      - spironolactone
-      - alpha_blocker
-      - ccb
-      - sbp_24
-      - dbp_24
-      - pp_24
-      - sbp_tte
-      - dbp_tte
-      - pp_tte
-      - ht_severity
-      - ht_grade
-      - hr_tte
-      - creat
-      - gfr
-      - nt_probnp
-      - nt_probnp_group
-      - e_velocity
-      - a_velocity
-      - mv_dt
-      - lateral_e_prime
-      - septal_e_prime
-      - reduced_e_prime
-      - e_e_prime_ratio
-      - d_dysfunction_e_e_prime_ratio
-      - la_volume
-      - dilated_la
-      - ph_vmax_tr
-      - lvm_ind
-      - lvh
-      - ivs_d
-      - lvid_d
-      - pw_d
-      - diastolic_dysfunction_param_sum
-      - diastolic_dysfunction
-      - ht_cm
-
-task:
-  _target_: didactic.tasks.cardiac_records_stratification.CardiacRecordsStratificationTask
-
-  model:
-    _target_: xgboost.XGBClassifier
-    enable_categorical: True
-    random_state: ${oc.select:trial,null}
-
-  target_attr: ht_severity
-
-exclude_tabular_attrs: [ht_severity,ht_grade]
-# Determine the number of tabular attributes used by the model based on the config
-n_tabular_attrs: ${builtin.len:${task.tabular_attrs}}
-
-model_ckpt: xgb-model.json
-scores_filename: test_categorical_scores.csv
-
-
-experiment_dirname: data=${hydra:runtime.choices.task/data}/target=${task.target_attr}
-hydra:
-  job:
-    config:
-      override_dirname:
-        exclude_keys:
-          - hydra/launcher
-          - hydra.launcher.n_jobs
-          - hydra.run.dir
-          - hydra.sweep.dir
-          - hydra.sweep.subdir
-
-          - experiment
-
-          - exclude_tabular_attrs
-          - task/data
-          - task.tabular_attrs
-          - task.time_series_attrs
-          - task.target_attr
-
-  run:
-    dir: ${oc.env:CARDIAC_MULTIMODAL_REPR_PATH}/records-xgb/${experiment_dirname}/${hydra.job.override_dirname}
-  sweep:
-    dir: ${oc.env:CARDIAC_MULTIMODAL_REPR_PATH}/records-xgb
-    subdir: ${experiment_dirname}/${hydra.job.override_dirname}