osx-whitelist.txt

aniso8601
ansible
appdirs
argh
arrow
art
awscli
bamtools
bcbio-nextgen
bcbio-nextgen-vm
bcbio-prioritize
bcbio-rnaseq
bcbio-variation
bcbio-variation-recall
bcbio_monitor
bcdoc
bcftools
bedtools
bioawk
bioblend
bioconductor-affy
bioconductor-affyio
bioconductor-annotationdbi
bioconductor-biobase
bioconductor-biocgenerics
bioconductor-biocinstaller
bioconductor-biocparallel
bioconductor-biostrings
bioconductor-complexheatmap
bioconductor-dada2
bioconductor-dnacopy
bioconductor-genomeinfodb
bioconductor-genomicalignments
bioconductor-genomicranges
bioconductor-geoquery
bioconductor-ggtree
bioconductor-graph
bioconductor-iranges
bioconductor-limma
bioconductor-multtest
bioconductor-phyloseq
bioconductor-preprocesscore
bioconductor-rbgl
bioconductor-rsamtools
bioconductor-s4vectors
bioconductor-shortread
bioconductor-summarizedexperiment
bioconductor-vsn
bioconductor-xvector
bioconductor-zlibbioc
blast
bleach
blinker
bmfilter
bmtagger
bmtool
botocore
bottle
bwa
bx-python
chanjo
chromhmm
cnvkit
cpat
cramtools
curl
cutadapt
cyordereddict
cyvcf2
deeptools
dominate
dxua
elasticluster
extract_fullseq
fadapa
fastq-join
fastq-multx
fastqc
fisher
fitter
flask-admin
flask-basicauth
flask-bootstrap
flask-bower
flask-nav
flask-potion
flask-sqlalchemy
freebayes
gatk-framework
gawk
gemini
geneimpacts
gffutils
google-api-python-client
grabix
htslib
httplib2
httpretty
hubward
impute2
infinity
inheritance
intervals
ipython-cluster-helper
java-jdk
jmespath
joblib
last
libmagic
lofreq
logbook
lumpy-sv
mafft
mageck
mageck-vispr
mash
metaseq
metaseq-all
metasv
mosaik
moto
multiqc
mummer
muscle
mvicuna
mygene
netifaces
novoalign
oauth2client
oncofuse
pbgzip
peakzilla
perl
perl-app-cpanminus
perl-module-build
perl-threaded
perl-vcftools-vcf
phonenumbers
picard
prinseq
prodigal
py-graphviz
pyaml
pyasn1-modules
pybedtools
pybigwig
pycli
pyfaidx
pysam
pysan1-modules
python-dateutil
python-levenshtein
python-magic
python-wget
pythonpy
pyvcf
qsignature
qualimap
r-ade4
r-bio3d
r-biom
r-catools
r-cghflasso
r-circlize
r-dendextend
r-diagram
r-fda
r-flowr
r-funr
r-futile.logger
r-futile.options
r-future
r-getopt
r-getoptlong
r-ggally
r-ggplot2
r-ggrepel
r-globaloptions
r-globals
r-googlevis
r-hwriter
r-lambda.r
r-listenv
r-locfit
r-lsd
r-matrixstats
r-mclust
r-nanostringnorm
r-optparse
r-params
r-pcapp
r-permute
r-pscbs
r-r.cache
r-r.methodss3
r-r.oo
r-r.utils
r-rappdirs
r-runit
r-seqinr
r-shape
r-signal
r-snow
r-spp
r-vegan
r-venndiagram
r-viridis
requests-toolbelt
rpy2
rsa
rtg-tools
s3gof3r
sambamba
samtools
seqcluster
seqtk
skewer
simple_sv_annotation
simplejson
snakemake
snpeff
spades
sqlalchemy-datatables
srprism
star
subread
sure
svgwrite
tabulate
tbb
toposort
trackhub
trimmomatic
trinity
ucsc-axttomaf
ucsc-axttopsl
ucsc-bedclip
ucsc-bedcommonregions
ucsc-bedcoverage
ucsc-bedextendranges
ucsc-bedgeneparts
ucsc-bedgraphpack
ucsc-bedgraphtobigwig
ucsc-bedintersect
ucsc-beditemoverlapcount
ucsc-bedpileups
ucsc-bedremoveoverlap
ucsc-bedrestricttopositions
ucsc-bedsort
ucsc-bedtobigbed
ucsc-bedtogenepred
ucsc-bedtopsl
ucsc-bedweedoverlapping
ucsc-bigbedinfo
ucsc-bigbednameditems
ucsc-bigbedsummary
ucsc-bigbedtobed
ucsc-bigwigaverageoverbed
ucsc-bigwigcat
ucsc-bigwigcluster
ucsc-bigwigcorrelate
ucsc-bigwiginfo
ucsc-bigwigmerge
ucsc-bigwigsummary
ucsc-bigwigtobedgraph
ucsc-bigwigtowig
ucsc-blasttopsl
ucsc-chainantirepeat
ucsc-chainfilter
ucsc-chainmergesort
ucsc-chainnet
ucsc-chainprenet
ucsc-chainsort
ucsc-chainsplit
ucsc-chainstitchid
ucsc-chainswap
ucsc-chaintoaxt
ucsc-chaintopsl
ucsc-chaintopslbasic
ucsc-crtreeindexbed
ucsc-crtreesearchbed
ucsc-fatotwobit
ucsc-fetchchromsizes
ucsc-genepredtobed
ucsc-genepredtofakepsl
ucsc-genepredtomafframes
ucsc-gff3topsl
ucsc-gtftogenepred
ucsc-hgloadbed
ucsc-hgloadchain
ucsc-hgloadmaf
ucsc-hgloadwiggle
ucsc-lavtopsl
ucsc-liftover
ucsc-liftup
ucsc-mafaddirows
ucsc-mafaddqrows
ucsc-mafcoverage
ucsc-maffetch
ucsc-maffilter
ucsc-maffrag
ucsc-maffrags
ucsc-mafgene
ucsc-mafmefirst
ucsc-maforder
ucsc-mafranges
ucsc-mafsinregion
ucsc-mafspecieslist
ucsc-mafspeciessubset
ucsc-mafsplit
ucsc-mafsplitpos
ucsc-maftoaxt
ucsc-maftopsl
ucsc-maftosnpbed
ucsc-netchainsubset
ucsc-nettobed
ucsc-pslcat
ucsc-pslcdnafilter
ucsc-pslcheck
ucsc-psldropoverlap
ucsc-pslfilter
ucsc-pslhisto
ucsc-pslliftsubrangeblat
ucsc-pslmap
ucsc-pslmrnacover
ucsc-pslpairs
ucsc-pslpartition
ucsc-pslpostarget
ucsc-pslpretty
ucsc-pslrecalcmatch
ucsc-pslreps
ucsc-pslscore
ucsc-pslselect
ucsc-pslsort
ucsc-pslstats
ucsc-pslswap
ucsc-psltobed
ucsc-psltochain
ucsc-psltopslx
ucsc-pslxtofa
ucsc-qactowig
ucsc-wigcorrelate
ucsc-wigtobigwig
uritemplate
urllib3
validators
vardict
vardict-java
varscan
vcflib
vcftools
visitor
vispr
voluptuous
vphaser2
vsearch
ws4py
wtforms-components
xmltodict