vai.config

params {
  config_profile_description = 'Van Andel Institute HPC profile provided by nf-core/configs.'
  config_profile_contact = 'Nathan Spix (@njspix)'
  config_profile_url = 'https://vanandelinstitute.sharepoint.com/sites/SC/SitePages/HPC3-High-Performance-Cluster-and-Cloud-Computing.aspx'
  max_memory = 250.GB
  max_cpus = 40
  max_time = 336.h
}

singularity {
  enabled = true
  autoMounts = true
}

// See if we can find evidence that we're on the new HPC
def new_cluster = false
try {
    new_cluster = ['/bin/bash', '-c', 'echo $HOSTNAME'].execute().text.trim() ==~ /(compute|submit)[0-9]{3}/
} catch (java.io.IOException e) {
    System.err.println("WARNING: Couldn't figure out which cluster we're on, defaulting to old (PBS) cluster")
}

if (new_cluster) {
    System.out.println("Using VAI institutional configuration for new HPC cluster")
} else {
    System.out.println("Using VAI institutional configuration for old HPC cluster")
}


process {
  beforeScript = { new_cluster ? '' : 'module load VARI/singularity' }()
  executor = { new_cluster ? 'slurm' : 'pbs' }()
  queue = { new_cluster ? 'long' : { task.time <= 48.h ? 'shortq' : 'longq' } }()
}