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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(addGeneInfoFromGtfToResTab)
export(assignColors)
export(checkAndCreateCorrectDesignString)
export(correlationPlot)
export(countsDensityPlot)
export(createDdsAndDESeq)
export(get3dPCAplot)
export(getGeneCountsPlot)
export(getGeneDetctionPlot)
export(getHeatmap)
export(getKaryogramPlot)
export(getLibraryComplexityPlot)
export(getMAplot)
export(getPcaLoadingsPlot)
export(getPcaPlot)
export(getPvalDistriPlot)
export(getReadCountsFromSalmonLogs)
export(getTopVarGenes)
export(getVolcanoPlot)
export(hierarchicalClustPlot)
export(importSampleTxiAndSaveRds)
export(is_fileExists)
export(is_validColor)
export(is_validMetaData)
export(is_validSampleColors)
export(is_validTx2gene)
export(loadGTF)
export(normFactorsBoxplot)
export(plotGeneBiotypes)
export(readsPerGroupBoxplot)
export(readsPerSampleBarPlot)
export(riboFractionPlot)
export(saveCounts)
export(transformCounts)
export(writeAndPlotDEResults)
import(DESeq2)
import(RColorBrewer)
import(dplyr)
import(ggfortify)
import(ggplot2)
import(grDevices)
import(patchwork)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(DESeq2,counts)
importFrom(DESeq2,lfcShrink)
importFrom(DESeq2,normalizationFactors)
importFrom(DESeq2,results)
importFrom(DESeq2,rlog)
importFrom(DESeq2,vst)
importFrom(GenomeInfoDb,keepStandardChromosomes)
importFrom(GenomicRanges,GRanges)
importFrom(assertthat,assert_that)
importFrom(assertthat,is.flag)
importFrom(assertthat,is.string)
importFrom(circlize,colorRamp2)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(forcats,fct_relevel)
importFrom(ggdendro,dendro_data)
importFrom(ggdendro,label)
importFrom(ggplot2,autoplot)
importFrom(ggplot2,theme_classic)
importFrom(ggrepel,geom_text_repel)
importFrom(magrittr,"%>%")
importFrom(matrixStats,rowVars)
importFrom(pheatmap,pheatmap)
importFrom(plotly,add_markers)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(purrr,map_chr)
importFrom(purrr,map_df)
importFrom(purrr,map_dfr)
importFrom(purrr,map_lgl)
importFrom(readr,write_csv)
importFrom(rlang,is_empty)
importFrom(rtracklayer,import.gff)
importFrom(stats,as.dendrogram)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,setNames)
importFrom(stringr,str_c)
importFrom(stringr,str_detect)
importFrom(stringr,str_remove)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(stringr,str_to_sentence)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,drop_na)
importFrom(tidyr,pivot_longer)
importFrom(tidyselect,everything)
importFrom(tximport,tximport)
importFrom(utils,head)