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Troubleshooting
Stephany Orjuela edited this page Mar 19, 2019
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- To check for errors in your inputs and parameter specifications, run
snakemake [--use-conda] checkinputs
-
If the snakemake error you get (typically starting with
RuleException: CalledProcessError in line XXX of /ARMOR/Snakefile:
) points to aRmd
file, or to a rule invoking an R script (e.g. edgeR, DRIMseq, tximeta), check the<output_folder>/Rout/
folder and look at the last.Rout
file generated. -
If you can't figure out the problem, open an issue and paste the code. We will contact you as soon as we can.