From 7de1d81737a26eefbc07a08b083286326a3e9155 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Thu, 12 Oct 2023 17:19:52 +0200 Subject: [PATCH] Standardize synonym type definition for PLURAL We're working towards standardizing synonym type definitions across the OBO Foundry. This involved getting OMO terms for several common synonym type definitions. More information in https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2450. In this PR, the ad hoc definition in ZFA for PLURAL synonyms is replaced with the standard synonym type definition OMO:0003004 for plural syonyms --- src/ontology/zfa-edit.obo | 1817 ++++++++++++++++++------------------- 1 file changed, 908 insertions(+), 909 deletions(-) diff --git a/src/ontology/zfa-edit.obo b/src/ontology/zfa-edit.obo index 610ad28..5a4044f 100644 --- a/src/ontology/zfa-edit.obo +++ b/src/ontology/zfa-edit.obo @@ -3,7 +3,6 @@ date: 29:11:2022 16:29 saved-by: zfinf auto-generated-by: OBO-Edit 2.3-beta5 subsetdef: cell_slim "cell_slim" -synonymtypedef: PLURAL "PLURAL" default-namespace: zebrafish_anatomical_ontology treat-xrefs-as-genus-differentia: CARO part_of NCBITaxon:7955 treat-xrefs-as-genus-differentia: CL part_of NCBITaxon:7955 @@ -45,7 +44,7 @@ name: adaxial cell namespace: zebrafish_anatomy def: "Muscle precursor cell that is adjacent to the notochord and part of the presomitic mesoderm." [PMID:8951054] subset: cell_slim -synonym: "adaxial cells" EXACT PLURAL [] +synonym: "adaxial cells" EXACT OMO:0003004 [] xref: CL:0007016 xref: TAO:0000003 is_a: ZFA:0009000 ! cell @@ -167,7 +166,7 @@ id: ZFA:0000013 name: cranial ganglion namespace: zebrafish_anatomy def: "Ganglion which is located in the head." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "cranial ganglia" EXACT PLURAL [] +synonym: "cranial ganglia" EXACT OMO:0003004 [] synonym: "presumptive cranial ganglia" RELATED [] xref: TAO:0000013 is_a: ZFA:0000190 ! ganglion @@ -250,7 +249,7 @@ id: ZFA:0000020 name: extraembryonic structure namespace: zebrafish_anatomy def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "extraembryonic structures" EXACT PLURAL [] +synonym: "extraembryonic structures" EXACT OMO:0003004 [] xref: CARO:0000042 xref: TAO:0000020 is_a: ZFA:0000037 ! anatomical structure @@ -277,9 +276,9 @@ id: ZFA:0000023 name: forerunner cell group namespace: zebrafish_anatomy def: "A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kupffer's vesicle." [ZFIN:ZDB-PUB-970107-2] -synonym: "DFCs" EXACT PLURAL [] -synonym: "dorsal forerunner cells" EXACT PLURAL [] -synonym: "forerunner cells" EXACT PLURAL [] +synonym: "DFCs" EXACT OMO:0003004 [] +synonym: "dorsal forerunner cells" EXACT OMO:0003004 [] +synonym: "forerunner cells" EXACT OMO:0003004 [] xref: TAO:0000023 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001126 ! noninvoluting endocytic marginal cell cluster @@ -328,7 +327,7 @@ name: heart primordium namespace: zebrafish_anatomy def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardial precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone." [ZFIN:ZDB-PUB-010219-2] synonym: "cardiac field" EXACT [] -synonym: "heart primordia" EXACT PLURAL [] +synonym: "heart primordia" EXACT OMO:0003004 [] xref: TAO:0000028 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001065 ! lateral mesoderm @@ -354,7 +353,7 @@ id: ZFA:0000030 name: macula utricle namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula utricle senses linear acceleration and gravity. The macula utricle covers most of the floor of the utricle." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7] -synonym: "maculae utricle" EXACT PLURAL [] +synonym: "maculae utricle" EXACT OMO:0003004 [] xref: TAO:0000030 is_a: ZFA:0000386 ! macula relationship: develops_from ZFA:0000168 ! anterior macula @@ -417,7 +416,7 @@ id: ZFA:0000035 name: lens namespace: zebrafish_anatomy def: "Portion of tissue that is a transparent, biconvex structure located in the eye through which light is focused." [GOC:mh, http://encyclopedia.thefreedictionary.com/Lens+(anatomy, ORCiD:0000-0001-9114-8737] -synonym: "lenses" EXACT PLURAL [] +synonym: "lenses" EXACT OMO:0003004 [] xref: TAO:0000035 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001679 ! solid lens vesicle @@ -440,7 +439,7 @@ id: ZFA:0000037 name: anatomical structure namespace: zebrafish_anatomy def: "Zebrafish anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "anatomical structures" EXACT PLURAL [] +synonym: "anatomical structures" EXACT OMO:0003004 [] xref: CARO:0000003 xref: TAO:0000037 is_a: ZFA:0100000 ! zebrafish anatomical entity @@ -508,7 +507,7 @@ name: muscle pioneer somite 1 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 1" EXACT PLURAL [] +synonym: "muscle pioneers somite 1" EXACT OMO:0003004 [] xref: TAO:0000043 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -571,7 +570,7 @@ id: ZFA:0000048 name: olfactory placode namespace: zebrafish_anatomy def: "Neurogenic placode that gives rise to the olfactory neurons that which convey odor information to the CNS." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "olfactory placodes" EXACT PLURAL [] +synonym: "olfactory placodes" EXACT OMO:0003004 [] xref: TAO:0000048 is_a: ZFA:0001309 ! neurogenic placode relationship: develops_from ZFA:0007062 ! olfactory field @@ -584,7 +583,7 @@ id: ZFA:0000049 name: optic recess namespace: zebrafish_anatomy def: "Lumen of optic stalk." [ZFIN:ZDB-PUB-101008-1] -synonym: "optic recesses" EXACT PLURAL [] +synonym: "optic recesses" EXACT OMO:0003004 [] xref: TAO:0000049 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! adult @@ -596,7 +595,7 @@ id: ZFA:0000050 name: optic vesicle namespace: zebrafish_anatomy def: "Portion of tissue that is comprised of neuroepithelium which has pinched off from the anterior neural keel and will form the optic cup." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "optic vesicles" EXACT PLURAL [] +synonym: "optic vesicles" EXACT OMO:0003004 [] xref: TAO:0000050 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000570 ! optic primordium @@ -623,7 +622,7 @@ id: ZFA:0000052 name: dorsal actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium which is part of the dorsal fin fold." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "dorsal actinotrichia" EXACT PLURAL [] +synonym: "dorsal actinotrichia" EXACT OMO:0003004 [] xref: TAO:0000052 is_a: ZFA:0000089 ! fin fold actinotrichium relationship: end ZFS:0000034 ! hatching:pec-fin @@ -635,7 +634,7 @@ id: ZFA:0000053 name: presumptive segmental plate namespace: zebrafish_anatomy def: "Embryonic structure part of the mesoderm fated to become segmental plate." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] -synonym: "presumptive segmental plates" EXACT PLURAL [] +synonym: "presumptive segmental plates" EXACT OMO:0003004 [] xref: TAO:0000053 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000022 ! gastrula:bud @@ -735,7 +734,7 @@ name: presumptive retinal pigmented epithelium namespace: zebrafish_anatomy def: "Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "outer layer optic cup" EXACT [] -synonym: "presumptive pigmented epithelia" EXACT PLURAL [] +synonym: "presumptive pigmented epithelia" EXACT OMO:0003004 [] xref: TAO:0000064 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! pharyngula:prim-5 @@ -771,7 +770,7 @@ id: ZFA:0000068 name: proneural cluster namespace: zebrafish_anatomy def: "Cluster of cells in the neural plate that have the potential to become neuroblast." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-990921-1] -synonym: "proneural clusters" EXACT PLURAL [] +synonym: "proneural clusters" EXACT OMO:0003004 [] xref: TAO:0000068 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000024 ! segmentation:5-9 somites @@ -887,7 +886,7 @@ id: ZFA:0000078 name: ventral actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium which is part of the ventral fin fold." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "ventral actinotrichia" EXACT PLURAL [] +synonym: "ventral actinotrichia" EXACT OMO:0003004 [] xref: TAO:0000078 is_a: ZFA:0000089 ! fin fold actinotrichium relationship: end ZFS:0000034 ! hatching:pec-fin @@ -968,7 +967,7 @@ alt_id: ZFA:0000736 def: "Apical ectodermal ridge that is part of the pectoral fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "AER pectoral fin" EXACT [] synonym: "apical ectodermal ridge pectoral fin" EXACT [] -synonym: "apical ectodermal ridge pectoral fin buds" EXACT PLURAL [] +synonym: "apical ectodermal ridge pectoral fin buds" EXACT OMO:0003004 [] synonym: "apical ectodermal ridge pectoral fins" EXACT [] synonym: "apical fold pectoral fin" EXACT [] xref: TAO:0000085 @@ -1011,7 +1010,7 @@ id: ZFA:0000089 name: fin fold actinotrichium namespace: zebrafish_anatomy def: "Portion of tissue which is a slender, horny, flexible, unsegmented fibril, which strengthens the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine." [http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm] -synonym: "fin fold actinotrichia" EXACT PLURAL [] +synonym: "fin fold actinotrichia" EXACT OMO:0003004 [] synonym: "median fin fold actinotrichium" EXACT [] xref: TAO:0000089 is_a: ZFA:0005435 ! actinotrichium @@ -1063,7 +1062,7 @@ name: blastomere namespace: zebrafish_anatomy def: "Cell that arises during cleavage and is partially cleaved, and located at the blastodisc margin prior to collectively forming the yolk syncytial layer (YSL) in the midblastula." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim -synonym: "blastomeres" EXACT PLURAL [] +synonym: "blastomeres" EXACT OMO:0003004 [] xref: TAO:0000093 is_a: ZFA:0009000 ! cell relationship: end ZFS:0000015 ! blastula:dome @@ -1075,7 +1074,7 @@ id: ZFA:0000094 name: blood island namespace: zebrafish_anatomy def: "Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension." [ZFIN:ZDB-PUB-961014-576] -synonym: "blood islands" EXACT PLURAL [] +synonym: "blood islands" EXACT OMO:0003004 [] synonym: "caudal hematopoietic tissue" RELATED [] synonym: "posterior blood island" RELATED [] synonym: "posterior ICM" EXACT [] @@ -1250,7 +1249,7 @@ id: ZFA:0000107 name: eye namespace: zebrafish_anatomy def: "Cavitated compound organ that consists of the neural retina, lens, cornea and iris and is the sensory apparatus of the visual system." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "eyes" EXACT PLURAL [] +synonym: "eyes" EXACT OMO:0003004 [] xref: TAO:0000107 is_a: ZFA:0001490 ! cavitated compound organ relationship: develops_from ZFA:0001678 ! immature eye @@ -1264,7 +1263,7 @@ id: ZFA:0000108 name: fin namespace: zebrafish_anatomy def: "Surface structure involved in locomotion." [TAO:WD] -synonym: "fins" EXACT PLURAL [] +synonym: "fins" EXACT OMO:0003004 [] xref: TAO:0000108 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! adult @@ -1369,7 +1368,7 @@ id: ZFA:0000116 name: macula lagena namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula lagena develops from the posterior macula. In juveniles the macula lagena lies in a vertical plane covering most of the medial wall of the lagena." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-020403-4] -synonym: "maculae lagena" EXACT PLURAL [] +synonym: "maculae lagena" EXACT OMO:0003004 [] xref: TAO:0000116 is_a: ZFA:0000386 ! macula relationship: develops_from ZFA:0000558 ! posterior macula @@ -1408,7 +1407,7 @@ id: ZFA:0000119 name: retinal inner nuclear layer namespace: zebrafish_anatomy def: "Retinal layer that contains the interneurons, the horizontal, bipolar and amacrine cells." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-970602-3] -synonym: "inner nuclear layer" EXACT PLURAL [] +synonym: "inner nuclear layer" EXACT OMO:0003004 [] synonym: "intermediate cell layer" EXACT [] xref: TAO:0000119 is_a: ZFA:0001477 ! portion of tissue @@ -1421,7 +1420,7 @@ id: ZFA:0000120 name: lateral line ganglion namespace: zebrafish_anatomy def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "lateral line ganglia" EXACT PLURAL [] +synonym: "lateral line ganglia" EXACT OMO:0003004 [] synonym: "llg" EXACT [] xref: TAO:0000120 is_a: ZFA:0000013 ! cranial ganglion @@ -1445,7 +1444,7 @@ id: ZFA:0000122 name: lens placode namespace: zebrafish_anatomy def: "Ectodermal primordium of the lens of the eye." [ZFIN:ZDB-PUB-961014-576] -synonym: "lens placodes" EXACT PLURAL [] +synonym: "lens placodes" EXACT OMO:0003004 [] xref: TAO:0000122 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000026 ! segmentation:14-19 somites @@ -1485,7 +1484,7 @@ name: mandibular lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the mandibular lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast mandibular" EXACT [] -synonym: "neuromasts mandibular" EXACT PLURAL [] +synonym: "neuromasts mandibular" EXACT OMO:0003004 [] xref: TAO:0000125 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! adult @@ -1591,7 +1590,7 @@ name: otic lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the otic lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast otic" EXACT [] -synonym: "neuromasts otic" EXACT PLURAL [] +synonym: "neuromasts otic" EXACT OMO:0003004 [] xref: TAO:0000136 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! adult @@ -1603,7 +1602,7 @@ id: ZFA:0000137 name: optic stalk namespace: zebrafish_anatomy def: "Portion of tissue that provides a pathway for axon migration from the retina. The cells of the optic stalk later differentiate into glial cells of the optic nerve." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-030210-6, ZFIN:ZDB-PUB-101201-28] -synonym: "optic stalks" EXACT PLURAL [] +synonym: "optic stalks" EXACT OMO:0003004 [] xref: TAO:0000137 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007031 ! anterior neural rod @@ -1640,7 +1639,7 @@ id: ZFA:0000141 name: pectoral fin bud namespace: zebrafish_anatomy def: "Fin bud that develops into the pectoral fin." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pectoral fin buds" EXACT PLURAL [] +synonym: "pectoral fin buds" EXACT OMO:0003004 [] xref: TAO:0000141 is_a: ZFA:0001383 ! fin bud relationship: develops_from ZFA:0001453 ! pectoral fin field @@ -1663,7 +1662,7 @@ id: ZFA:0000143 name: retinal photoreceptor layer namespace: zebrafish_anatomy def: "The layer within the retina where the photoreceptor cell receptor segments reside. This layer is closest to the sclera." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-677] -synonym: "retinal photoreceptor layers" EXACT PLURAL [] +synonym: "retinal photoreceptor layers" EXACT OMO:0003004 [] xref: TAO:0000143 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -1730,7 +1729,7 @@ id: ZFA:0000150 name: pronephric duct namespace: zebrafish_anatomy def: "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Wingert et al. have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-071029-9, ZFIN:ZDB-PUB-961014-576] -synonym: "pronephric ducts" EXACT PLURAL [] +synonym: "pronephric ducts" EXACT OMO:0003004 [] xref: TAO:0000150 is_a: ZFA:0005171 ! duct relationship: develops_from ZFA:0000067 ! pronephric mesoderm @@ -1758,7 +1757,7 @@ id: ZFA:0000152 name: retina namespace: zebrafish_anatomy def: "Multi-tissue structure that contains the retinal neural layer and the retinal pigmented epithelium, and develops from the optic cup." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] -synonym: "retinas" EXACT PLURAL [] +synonym: "retinas" EXACT OMO:0003004 [] xref: TAO:0000152 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001202 ! optic cup @@ -1895,7 +1894,7 @@ id: ZFA:0000162 name: trigeminal placode namespace: zebrafish_anatomy def: "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] -synonym: "trigeminal placodes" EXACT PLURAL [] +synonym: "trigeminal placodes" EXACT OMO:0003004 [] xref: TAO:0000162 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000026 ! segmentation:14-19 somites @@ -1927,7 +1926,7 @@ name: inferior lobe namespace: zebrafish_anatomy def: "Multi-tissue structure that is a paired nucleus located in the lateral expansion of the dorsal hypothalamic zone." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "inferior lobe of hypothalamus" EXACT [ZFIN:ZDB-PUB-961014-1280] -synonym: "inferior lobes" EXACT PLURAL [] +synonym: "inferior lobes" EXACT OMO:0003004 [] synonym: "lateral lobe of hypothalamus" EXACT [] synonym: "lobus inferior hypothalami" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000165 @@ -1943,9 +1942,9 @@ namespace: zebrafish_anatomy alt_id: ZFA:0000378 def: "Patch of thickened, pseudostratified epithelium that is associated with the lateral semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The lateral crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "lateral crista ampullaris" EXACT [] -synonym: "lateral cristae" EXACT PLURAL [] +synonym: "lateral cristae" EXACT OMO:0003004 [] synonym: "lateral semicircular canal sensory patch" EXACT [] -synonym: "lateral semicircular canal sensory patches" EXACT PLURAL [] +synonym: "lateral semicircular canal sensory patches" EXACT OMO:0003004 [] synonym: "lc" EXACT [] synonym: "medial crista" RELATED [ZFIN:ZDB-PUB-051116-3] xref: TAO:0000166 @@ -1991,7 +1990,7 @@ id: ZFA:0000170 name: basibranchial namespace: zebrafish_anatomy def: "Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "basibranchials" EXACT PLURAL [] +synonym: "basibranchials" EXACT OMO:0003004 [] xref: TAO:0000170 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001220 ! copula @@ -2011,7 +2010,7 @@ id: ZFA:0000172 name: branchial muscle namespace: zebrafish_anatomy def: "Muscle that is part of pharyngeal arches 3-7 which are also known as the branchial arches." [GOC:CVS, ORCiD:0000-0002-2244-7917] -synonym: "branchial muscles" EXACT PLURAL [] +synonym: "branchial muscles" EXACT OMO:0003004 [] xref: TAO:0000172 is_a: ZFA:0001652 ! head muscle relationship: end ZFS:0000044 ! adult @@ -2040,8 +2039,8 @@ name: cerebellovestibular tract namespace: zebrafish_anatomy def: "Cerebellar tract that consists of efferent fibers from the Purkinje cells to the neurons of the vestibular nuclei in the hindbrain. The cerebellovestibular tracts are involved in precise motor controls, such as the vestibulo-ocular reflex." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-090422-9] synonym: "caudal cerebellar tract" EXACT [] -synonym: "caudal cerebellar tracts" EXACT PLURAL [] -synonym: "cerebellovestibular tracts" EXACT PLURAL [] +synonym: "caudal cerebellar tracts" EXACT OMO:0003004 [] +synonym: "cerebellovestibular tracts" EXACT OMO:0003004 [] xref: TAO:0000174 is_a: ZFA:0001708 ! cerebellar white matter relationship: end ZFS:0000044 ! adult @@ -2077,7 +2076,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000177 name: caudal oblique namespace: zebrafish_anatomy -synonym: "caudal obliques" EXACT PLURAL [] +synonym: "caudal obliques" EXACT OMO:0003004 [] xref: TAO:0000177 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -2166,7 +2165,7 @@ id: ZFA:0000184 name: cleithrum namespace: zebrafish_anatomy def: "Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-576] -synonym: "cleithra" EXACT PLURAL [] +synonym: "cleithra" EXACT OMO:0003004 [] xref: TAO:0000184 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -2204,7 +2203,7 @@ namespace: zebrafish_anatomy def: "Brain structure which is one of three parts of the cerebellum and is the entry point for a posterior cerebellar tract that carries cerebellar afferents from many brain stem nuclei. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "cerebellar corpus" EXACT [] synonym: "corpus cerebelli granular layer" EXACT [ZFIN:ZDB-PUB-961014-1280] -synonym: "corpus cerebellum" EXACT PLURAL [] +synonym: "corpus cerebellum" EXACT OMO:0003004 [] xref: TAO:0000188 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -2228,7 +2227,7 @@ id: ZFA:0000190 name: ganglion namespace: zebrafish_anatomy def: "Structures containing a collection of nerve cell bodies." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "ganglia" EXACT PLURAL [] +synonym: "ganglia" EXACT OMO:0003004 [] xref: TAO:0000190 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -2266,7 +2265,7 @@ id: ZFA:0000193 name: diffuse nucleus inferior lobe namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of small cells presumably migrated from the periventricular cell masses. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "diffuse nuclei" EXACT PLURAL [] +synonym: "diffuse nuclei" EXACT OMO:0003004 [] synonym: "DIL" EXACT [] xref: TAO:0000193 is_a: ZFA:0001659 ! diencephalic nucleus @@ -2292,7 +2291,7 @@ name: dorsal depressor namespace: zebrafish_anatomy def: "Dorsal fin muscle that moves individual rays the dorsal fin into a lowered position. The dorsal depressors extend from either the right or left base of a dorsal fin ray to the posterior edge of a proximal pterygophore in the median septum. Antagonistic to dorsal erector muscle. There is one dorsal depressor for each dorsal fin lepidotrichium." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "depressor dorsalis" EXACT [] -synonym: "dorsal depressors" EXACT PLURAL [] +synonym: "dorsal depressors" EXACT OMO:0003004 [] xref: TAO:0000195 is_a: ZFA:0005270 ! depressor muscle relationship: end ZFS:0000044 ! adult @@ -2304,7 +2303,7 @@ id: ZFA:0000196 name: dorsal hypohyal bone namespace: zebrafish_anatomy def: "The dorsal hypohyal is a small cartilage replacement bone ossifying from the anterodorsal ceratohyal cartilage. Ossification begins on the medial surface of the ceratohyal cartilage at a ligamentous connection to basibranchial 1 (6.8 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "dorsal hypohyals" EXACT PLURAL [] +synonym: "dorsal hypohyals" EXACT OMO:0003004 [] xref: TAO:0000196 is_a: ZFA:0001381 ! hypohyal bone relationship: end ZFS:0000044 ! adult @@ -2318,8 +2317,8 @@ id: ZFA:0000197 name: dorsal habenular nucleus namespace: zebrafish_anatomy def: "Habenular nucleus where the efferent projections innervate the interpeduncular nucleus. The dorsal habenula is structurally homologous to the mammalian medial habenula." [ZFIN:ZDB-PUB-100202-7] -synonym: "dorsal habenular nuclei" EXACT PLURAL [] -synonym: "dorsal nuclei" EXACT PLURAL [] +synonym: "dorsal habenular nuclei" EXACT OMO:0003004 [] +synonym: "dorsal nuclei" EXACT OMO:0003004 [] xref: TAO:0000197 is_a: ZFA:0005575 ! brain nucleus relationship: end ZFS:0000044 ! adult @@ -2342,7 +2341,7 @@ id: ZFA:0000200 name: dorsal root ganglion namespace: zebrafish_anatomy def: "Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "dorsal root ganglia" EXACT PLURAL [] +synonym: "dorsal root ganglia" EXACT OMO:0003004 [] synonym: "DRG" EXACT [] xref: TAO:0000200 is_a: ZFA:0001573 ! trunk ganglion @@ -2449,7 +2448,7 @@ id: ZFA:0000209 name: lateral preglomerular nucleus namespace: zebrafish_anatomy def: "Preglomerular nucleus which is located between the rostral and medial preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "lateral preglomerular nuclei" EXACT PLURAL [] +synonym: "lateral preglomerular nuclei" EXACT OMO:0003004 [] xref: TAO:0000209 is_a: ZFA:0001662 ! preglomerular nucleus relationship: end ZFS:0000044 ! adult @@ -2472,7 +2471,7 @@ id: ZFA:0000211 name: gill lamella namespace: zebrafish_anatomy def: "Multi-tissue structure that is the transverse vertical platelet on the gill filament, through which capillaries run. The primary gill lamellae carry numerous fine layers called secondary lamellae which are the actual regions of respiration and excretion." [GOC:cvs, http://www.briancoad.com/Dictionary/G.htm, ORCiD:0000-0002-2244-7917] -synonym: "gill lamellae" EXACT PLURAL [] +synonym: "gill lamellae" EXACT OMO:0003004 [] xref: TAO:0000211 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -2499,7 +2498,7 @@ id: ZFA:0000213 name: habenula namespace: zebrafish_anatomy def: "The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "habenulae" EXACT PLURAL [] +synonym: "habenulae" EXACT OMO:0003004 [] synonym: "habenular nucleus" EXACT [] xref: TAO:0000213 is_a: ZFA:0001488 ! multi-tissue structure @@ -2512,7 +2511,7 @@ id: ZFA:0000214 name: hypobranchial vessel namespace: zebrafish_anatomy comment: May be the same as hypobranchial artery and may need to be merged. -synonym: "hypobranchial vessels" EXACT PLURAL [] +synonym: "hypobranchial vessels" EXACT OMO:0003004 [] xref: TAO:0000214 is_obsolete: true replaced_by: ZFA:0000673 @@ -2558,7 +2557,7 @@ relationship: start ZFS:0000027 ! segmentation:20-25 somites id: ZFA:0000219 name: intermediate reticular formation namespace: zebrafish_anatomy -synonym: "intermediate reticular formations" EXACT PLURAL [] +synonym: "intermediate reticular formations" EXACT OMO:0003004 [] xref: TAO:0000219 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! adult @@ -2572,7 +2571,7 @@ namespace: zebrafish_anatomy alt_id: ZFA:0000361 def: "One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The lateral semicircular canal is associated with the lateral crista. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "horizontal semicircular canal" EXACT [] -synonym: "lateral semicircular canals" EXACT PLURAL [] +synonym: "lateral semicircular canals" EXACT OMO:0003004 [] synonym: "lateral semicircular duct" EXACT [] xref: TAO:0000220 is_a: ZFA:0000431 ! semicircular canal @@ -2583,7 +2582,7 @@ relationship: start ZFS:0000033 ! hatching:long-pec id: ZFA:0000221 name: internal levator namespace: zebrafish_anatomy -synonym: "internal levators" EXACT PLURAL [] +synonym: "internal levators" EXACT OMO:0003004 [] xref: TAO:0000221 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -2594,7 +2593,7 @@ id: ZFA:0000222 name: isthmic primary nucleus namespace: zebrafish_anatomy def: "Sensory trigeminal nucleus located in the most rostral position. It lies immediately caudal to the secondary gustatory nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280] -synonym: "isthmic primary nuclei" EXACT PLURAL [] +synonym: "isthmic primary nuclei" EXACT OMO:0003004 [] synonym: "isthmic primary sensory trigeminal nucleus" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000222 is_a: ZFA:0000433 ! sensory trigeminal nucleus @@ -2633,7 +2632,7 @@ id: ZFA:0000225 name: lateral crista primordium namespace: zebrafish_anatomy def: "Is an otic epithelium that will mature into the lateral crista." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "lateral crista primordia" EXACT PLURAL [] +synonym: "lateral crista primordia" EXACT OMO:0003004 [] xref: TAO:0000225 is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000035 ! larval:protruding-mouth @@ -2645,7 +2644,7 @@ id: ZFA:0000226 name: lateral ethmoid namespace: zebrafish_anatomy def: "Large, paired cartilage bones separating the olfactory region from the orbit. Arises from both perichondral and endochondral ossifications (Harrington 1955). Bordered by the mesethmoid anteriorly and overlain by the frontal dorsally, each lateral ethmoid extends medially to meet its fellow posteriorly along the midline. Develops from the laminae orbitonasales." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "lateral ethmoids" EXACT PLURAL [] +synonym: "lateral ethmoids" EXACT OMO:0003004 [] xref: TAO:0000226 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001503 ! lamina orbitonasalis @@ -2662,7 +2661,7 @@ name: lateral hypothalamic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is the lateral part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "arcuate nucleus" RELATED [] -synonym: "lateral hypothalamic nuclei" EXACT PLURAL [] +synonym: "lateral hypothalamic nuclei" EXACT OMO:0003004 [] synonym: "lateral tuberal nucleus" EXACT [] xref: TAO:0000227 is_a: ZFA:0001659 ! diencephalic nucleus @@ -2675,7 +2674,7 @@ id: ZFA:0000228 name: lateral line primordium namespace: zebrafish_anatomy def: "Is a portion of tissue that migrates and deposits immature neuromasts and interneuromasts." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "lateral line primordia" EXACT PLURAL [] +synonym: "lateral line primordia" EXACT OMO:0003004 [] synonym: "llp" EXACT [] xref: TAO:0000228 is_a: ZFA:0001477 ! portion of tissue @@ -2713,7 +2712,7 @@ namespace: zebrafish_anatomy alt_id: ZFA:0005493 def: "Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals that forms the lateral protrusion of the third ventricle. See also Di Dario (2004)." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917] synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] -synonym: "lateral recesses" EXACT PLURAL [] +synonym: "lateral recesses" EXACT OMO:0003004 [] synonym: "recessus lateralis" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000231 xref: TAO:0001799 @@ -2755,7 +2754,7 @@ id: ZFA:0000234 name: macula neglecta namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. The macula neglecta a pair of sensory patches positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-7, ZFIN:ZDB-PUB-020403-4] -synonym: "maculae neglecta" EXACT PLURAL [] +synonym: "maculae neglecta" EXACT OMO:0003004 [] xref: TAO:0000234 is_a: ZFA:0000386 ! macula relationship: develops_from ZFA:0000558 ! posterior macula @@ -2768,7 +2767,7 @@ id: ZFA:0000235 name: magnocellular superficial pretectal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the superficial pretectum and is caudally contiguous with the caudal pretectal nucleus. Cells of the magnocellular superficial pretectal nucleus are slightly larger and more orderly around a central neuropil than those of the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "magnocellular superficial pretectal nuclei" EXACT PLURAL [] +synonym: "magnocellular superficial pretectal nuclei" EXACT OMO:0003004 [] xref: TAO:0000235 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! adult @@ -2780,7 +2779,7 @@ id: ZFA:0000236 name: mandibular muscle namespace: zebrafish_anatomy def: "Muscle that are part of the mandibular arch (pharyngeal arch 1)." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "mandibular muscles" EXACT PLURAL [] +synonym: "mandibular muscles" EXACT OMO:0003004 [] xref: TAO:0000236 is_a: ZFA:0001652 ! head muscle relationship: end ZFS:0000044 ! adult @@ -2792,7 +2791,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000237 name: medial forebrain bundle diencephalon namespace: zebrafish_anatomy -synonym: "medial forebrain bundles diencephalon" EXACT PLURAL [] +synonym: "medial forebrain bundles diencephalon" EXACT OMO:0003004 [] xref: TAO:0000237 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! adult @@ -2815,7 +2814,7 @@ id: ZFA:0000239 name: mesocoracoid bone namespace: zebrafish_anatomy def: "Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Mesocoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired." [TAO:WD] -synonym: "mesocoracoid bones" EXACT PLURAL [] +synonym: "mesocoracoid bones" EXACT OMO:0003004 [] xref: TAO:0000239 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001537 ! mesocoracoid cartilage @@ -2828,7 +2827,7 @@ id: ZFA:0000240 name: metapterygoid namespace: zebrafish_anatomy def: "The metapterygoid is a posterior bone that ossifies in the cartilaginous palatoquadrate arch. It first appears as a rod of bone with an anterodorsally projecting process from the middle of the dorsal surface (6.4 mm). The adult metapterygoid is roughly rectangular in shape with rounded corners and an anterodorsally projecting spine that meets the entopterygoid medially in a synostosis at its posteromedial edge. The posterior end curves dorsally to form the posteroventral surface of the orbit." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "metapterygoids" EXACT PLURAL [] +synonym: "metapterygoids" EXACT OMO:0003004 [] xref: TAO:0000240 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0005902 ! pterygoid process @@ -2867,7 +2866,7 @@ namespace: zebrafish_anatomy def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] synonym: "lateral line neuromast" EXACT [] synonym: "lateral line organ" EXACT [] -synonym: "neuromasts" EXACT PLURAL [] +synonym: "neuromasts" EXACT OMO:0003004 [] xref: TAO:0000243 is_a: ZFA:0001478 ! anatomical cluster relationship: develops_from ZFA:0005227 ! protoneuromast @@ -2927,7 +2926,7 @@ id: ZFA:0000248 name: magnocellular preoptic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is dorsal to the caudal parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "magnocellular preoptic nuclei" EXACT PLURAL [] +synonym: "magnocellular preoptic nuclei" EXACT OMO:0003004 [] xref: TAO:0000248 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! adult @@ -2951,7 +2950,7 @@ id: ZFA:0000250 name: opercle namespace: zebrafish_anatomy def: "Dermal bone that articulates anteriorly with the hyomandibula. The opercle is paired and typically the largest bone of the opercular series. It is derived from the neural crest and is located in 2nd pharyngeal arch." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-120529-44] -synonym: "opercles" EXACT PLURAL [] +synonym: "opercles" EXACT OMO:0003004 [] xref: TAO:0000250 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -2974,7 +2973,7 @@ id: ZFA:0000252 name: optic tract namespace: zebrafish_anatomy def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "optic tracts" EXACT PLURAL [] +synonym: "optic tracts" EXACT OMO:0003004 [] synonym: "tractus opticus" EXACT [ZFIN:ZDB-PUB-961014-1280] xref: TAO:0000252 is_a: ZFA:0000338 ! diencephalic white matter @@ -2986,7 +2985,7 @@ id: ZFA:0000253 name: orbitosphenoid namespace: zebrafish_anatomy def: "Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anteriolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "orbitosphenoids" EXACT PLURAL [] +synonym: "orbitosphenoids" EXACT OMO:0003004 [] xref: TAO:0000253 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001505 ! taenia marginalis anterior @@ -3040,7 +3039,7 @@ id: ZFA:0000257 name: pectoral fin cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "pectoral fin cartilages" EXACT PLURAL [] +synonym: "pectoral fin cartilages" EXACT OMO:0003004 [] xref: TAO:0000257 is_a: ZFA:0001543 ! paired fin cartilage relationship: end ZFS:0000044 ! adult @@ -3064,7 +3063,7 @@ id: ZFA:0000259 name: mandibular lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva consisting of 2 neuromast. One neuromast is positioned at the front edge of the jaw the second posteriorly on the mandible. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3] -synonym: "mandibular lateral lines" EXACT PLURAL [] +synonym: "mandibular lateral lines" EXACT OMO:0003004 [] synonym: "mandibular line" EXACT [ZFIN:ZDB-PUB-000523-3] xref: TAO:0000259 is_a: ZFA:0001469 ! lateral line @@ -3077,7 +3076,7 @@ id: ZFA:0000260 name: periventricular nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus which is the periventricular part of the ventral hypothalamic zone. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "periventricular nuclei" EXACT PLURAL [] +synonym: "periventricular nuclei" EXACT OMO:0003004 [] synonym: "ventral zone of periventricular hypothalamus" EXACT [] xref: TAO:0000260 is_a: ZFA:0001659 ! diencephalic nucleus @@ -3101,7 +3100,7 @@ namespace: zebrafish_anatomy alt_id: ZFA:0000483 def: "One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The posterior semicircular canal is associated with the posterior crista. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "caudal vertical semicircular canal" EXACT [] -synonym: "posterior semicircular canals" EXACT PLURAL [] +synonym: "posterior semicircular canals" EXACT OMO:0003004 [] synonym: "posterior semicircular duct" EXACT [] xref: TAO:0000262 is_a: ZFA:0000431 ! semicircular canal @@ -3114,7 +3113,7 @@ name: precaudal vertebra namespace: zebrafish_anatomy def: "Post-cranial vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-031103-13] synonym: "abdominal vertebra" RELATED [] -synonym: "precaudal vertebrae" EXACT PLURAL [] +synonym: "precaudal vertebrae" EXACT OMO:0003004 [] synonym: "trunk vertebra" RELATED [] xref: TAO:0000263 is_a: ZFA:0001189 ! vertebra @@ -3127,7 +3126,7 @@ id: ZFA:0000264 name: preopercle namespace: zebrafish_anatomy def: "Dermal bone that is part of the opercular flap and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "preopercles" EXACT PLURAL [] +synonym: "preopercles" EXACT OMO:0003004 [] xref: TAO:0000264 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -3177,7 +3176,7 @@ id: ZFA:0000268 name: anal fin proximal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "anal fin proximal radials" EXACT PLURAL [] +synonym: "anal fin proximal radials" EXACT OMO:0003004 [] xref: TAO:0000268 is_a: ZFA:0001646 ! anal fin radial relationship: end ZFS:0000044 ! adult @@ -3203,7 +3202,7 @@ id: ZFA:0000270 name: maxilla namespace: zebrafish_anatomy def: "The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "maxillae" EXACT PLURAL [] +synonym: "maxillae" EXACT OMO:0003004 [] xref: TAO:0000270 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -3217,7 +3216,7 @@ id: ZFA:0000271 name: radial namespace: zebrafish_anatomy def: "The internal skeletal supports of the median and paired fins." [TAO:curator] -synonym: "radials" EXACT PLURAL [] +synonym: "radials" EXACT OMO:0003004 [] xref: TAO:0000271 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! adult @@ -3270,7 +3269,7 @@ id: ZFA:0000277 name: scale namespace: zebrafish_anatomy def: "Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins." [TAO:WD] -synonym: "scales" EXACT PLURAL [] +synonym: "scales" EXACT OMO:0003004 [] xref: TAO:0000277 is_a: ZFA:0000292 ! surface structure relationship: develops_from ZFA:0001704 ! scale primordium @@ -3321,7 +3320,7 @@ name: hair cell posterior macula namespace: zebrafish_anatomy def: "Specialized neuronal receptor cells of the posterior macula. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576] subset: cell_slim -synonym: "sensory hair cells posterior macula" EXACT PLURAL [] +synonym: "sensory hair cells posterior macula" EXACT OMO:0003004 [] xref: TAO:0000281 is_a: ZFA:0009366 ! hair cell relationship: develops_from ZFA:0001099 ! immature hair cell posterior macula @@ -3334,7 +3333,7 @@ id: ZFA:0000282 name: sensory system namespace: zebrafish_anatomy def: "Nervous system responsible for transmitting sensory stimuli." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "sensory systems" EXACT PLURAL [] +synonym: "sensory systems" EXACT OMO:0003004 [] xref: TAO:0000282 is_a: ZFA:0001439 ! anatomical system relationship: end ZFS:0000044 ! adult @@ -3346,7 +3345,7 @@ id: ZFA:0000284 name: subopercle namespace: zebrafish_anatomy def: "Dermal bone lying below the opercle. The subopercle is a paired bone." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "subopercles" EXACT PLURAL [] +synonym: "subopercles" EXACT OMO:0003004 [] xref: TAO:0000284 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -3361,7 +3360,7 @@ name: superficial adductor namespace: zebrafish_anatomy def: "Pectoral fin muscle that develops from the primitive pectoral fin adductor. The adductor superficialis originates at the cleithrum and inserts on all fins rays except the first. Insertion of the adductor superficialis on fin rays is distal to the fin ray bases." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] synonym: "adductor superficialis" EXACT [ZFIN:ZDB-PUB-050920-7] -synonym: "superficial adductors" EXACT PLURAL [] +synonym: "superficial adductors" EXACT OMO:0003004 [] xref: TAO:0000285 is_a: ZFA:0005268 ! adductor muscle relationship: develops_from ZFA:0005650 ! primitive pectoral fin adductor @@ -3430,7 +3429,7 @@ name: medial octavolateralis nucleus namespace: zebrafish_anatomy def: "Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "intermediate octavolateral nucleus" EXACT [] -synonym: "medial octavolateralis nuclei" EXACT PLURAL [] +synonym: "medial octavolateralis nuclei" EXACT OMO:0003004 [] synonym: "MON" RELATED [] xref: TAO:0000291 is_a: ZFA:0000381 ! lateral line sensory nucleus @@ -3443,7 +3442,7 @@ id: ZFA:0000292 name: surface structure namespace: zebrafish_anatomy def: "Organism subdivision which is the collection of anatomical structures on the body surface." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "surface structures" EXACT PLURAL [] +synonym: "surface structures" EXACT OMO:0003004 [] xref: TAO:0000292 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000044 ! adult @@ -3480,7 +3479,7 @@ def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth synonym: "5th ganglion" EXACT [] synonym: "fifth ganglion" EXACT [] synonym: "gV" EXACT [] -synonym: "trigeminal ganglia" EXACT PLURAL [] +synonym: "trigeminal ganglia" EXACT OMO:0003004 [] xref: TAO:0000295 is_a: ZFA:0000013 ! cranial ganglion relationship: develops_from ZFA:0000080 ! trigeminal neural crest @@ -3560,7 +3559,7 @@ name: medial rectus namespace: zebrafish_anatomy def: "Extraocular muscle that runs parallel to the long axis of the fish and inserts on the anterior side of the eye at the sclera-corneal (SC) junction. The medial rectus lies in the same anatomical plane as the lateral rectus. The medial rectus is innervated by the oculomotor nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Hatching:Long-pec. -synonym: "medial recti" EXACT PLURAL [] +synonym: "medial recti" EXACT OMO:0003004 [] xref: TAO:0000301 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! adult @@ -3690,7 +3689,7 @@ id: ZFA:0000312 name: mesencephalic nucleus of trigeminal nerve namespace: zebrafish_anatomy def: "Sensory trigeminal nucleus located at the tectal ventricle near the synencephalon and optic tectum that contains large pyriform neurons. The sensory fibers of the large pyriform neurons that run peripherally in the trigeminal nerve." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-1280] -synonym: "mesencephalic nuclei of trigeminal nerves" EXACT PLURAL [] +synonym: "mesencephalic nuclei of trigeminal nerves" EXACT OMO:0003004 [] xref: TAO:0000312 is_a: ZFA:0000433 ! sensory trigeminal nucleus relationship: end ZFS:0000044 ! adult @@ -3701,7 +3700,7 @@ id: ZFA:0000313 name: anal inclinator namespace: zebrafish_anatomy def: "Series of paired muscles that have a distal attachment at the lateral base of each ray and a proximal attachment to the hypaxialis. The left and right inclinators attach the integument and trunk muscles to the base of each ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] -synonym: "anal inclinators" EXACT PLURAL [] +synonym: "anal inclinators" EXACT OMO:0003004 [] synonym: "inclinatores anales" EXACT [ZFIN:ZDB-PUB-171118-8] xref: TAO:0000313 is_a: ZFA:0005276 ! inclinator muscle @@ -3715,7 +3714,7 @@ name: anterior semicircular canal namespace: zebrafish_anatomy alt_id: ZFA:0000675 def: "One of three fluid-filled semicircular tubes, arranged orthogonally to each other in each ear. The anterior semicircular canal is associated with the anterior crista. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "anterior semicircular canals" EXACT PLURAL [] +synonym: "anterior semicircular canals" EXACT OMO:0003004 [] synonym: "anterior semicircular duct" EXACT [] synonym: "rostral vertical semicircular canal" EXACT [] xref: TAO:0000314 @@ -3769,7 +3768,7 @@ name: brainstem and spinal white matter namespace: zebrafish_anatomy def: "CNS white matter that is part of the brain stem or spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "brain stem and spinal tract/commissure" EXACT [] -synonym: "brain stem/spinal tracts and commissures" EXACT PLURAL [] +synonym: "brain stem/spinal tracts and commissures" EXACT OMO:0003004 [] xref: TAO:0000318 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! adult @@ -3781,7 +3780,7 @@ id: ZFA:0000319 name: branchiostegal membrane namespace: zebrafish_anatomy def: "The portion of tissue forming the membrane connecting the branchiostegals and enclosing the gill chamber." [http://www.fishbase.org/glossary/Glossary.php?q=branchiostegal+membrane] -synonym: "branchiostegal membranes" EXACT PLURAL [] +synonym: "branchiostegal membranes" EXACT OMO:0003004 [] xref: TAO:0000319 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -3805,7 +3804,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000321 name: caudal levator namespace: zebrafish_anatomy -synonym: "caudal levators" EXACT PLURAL [] +synonym: "caudal levators" EXACT OMO:0003004 [] xref: TAO:0000321 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -3815,7 +3814,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000322 name: caudal octaval nucleus namespace: zebrafish_anatomy -synonym: "caudal octaval nuclei" EXACT PLURAL [] +synonym: "caudal octaval nuclei" EXACT OMO:0003004 [] xref: TAO:0000322 is_a: ZFA:0000401 ! octaval nerve sensory nucleus relationship: end ZFS:0000044 ! adult @@ -3867,7 +3866,7 @@ id: ZFA:0000326 name: caudal vertebra namespace: zebrafish_anatomy def: "Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "caudal vertebrae" EXACT PLURAL [] +synonym: "caudal vertebrae" EXACT OMO:0003004 [] xref: TAO:0000326 is_a: ZFA:0001189 ! vertebra relationship: end ZFS:0000044 ! adult @@ -3932,7 +3931,7 @@ id: ZFA:0000332 name: coracoid namespace: zebrafish_anatomy def: "Endochondral bone that articulates dorsally with the scapula and with the mesocoracoid when the latter is present, posteriorly with the lower two or three proximal radials and antero-ventrally with the cleithrum. The coracoid develops from the scapulo-coracoid cartilage. The coracoid is paired." [TAO:GA_TG] -synonym: "coracoids" EXACT PLURAL [] +synonym: "coracoids" EXACT OMO:0003004 [] synonym: "scapulocoracoid" RELATED [] xref: TAO:0000332 is_a: ZFA:0001591 ! endochondral bone @@ -4031,7 +4030,7 @@ namespace: zebrafish_anatomy def: "Paired, deep caudal fin muscles that arise from a narrow insertion site at the 28th and 29th vertebrae, then extend toward the dorsal base of the caudal fin where they insert broadly on fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "CDI" RELATED [] synonym: "dorsal flexor" RELATED [] -synonym: "dorsal flexors" EXACT PLURAL [] +synonym: "dorsal flexors" EXACT OMO:0003004 [] synonym: "flexor caudalis dorsalis inferioris" EXACT [] xref: TAO:0000341 is_a: ZFA:0005271 ! flexor muscle @@ -4044,7 +4043,7 @@ id: ZFA:0000342 name: dorsal inclinator namespace: zebrafish_anatomy def: "Muscle of the dorsal fin that are thin, arise from the lateral edge of fin bases, and attach to the skin just above the epaxial muscle. The inclinator muscles bend the fin sideways. There is one dorsal inclinator for each dorsal fin lepidotrichium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] -synonym: "dorsal inclinators" EXACT PLURAL [] +synonym: "dorsal inclinators" EXACT OMO:0003004 [] synonym: "inclinator dorsalis" EXACT [] xref: TAO:0000342 is_a: ZFA:0005276 ! inclinator muscle @@ -4071,7 +4070,7 @@ id: ZFA:0000344 name: middle lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva positioned posterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3] -synonym: "middle lateral lines" EXACT PLURAL [] +synonym: "middle lateral lines" EXACT OMO:0003004 [] xref: TAO:0000344 is_a: ZFA:0001469 ! lateral line relationship: develops_from ZFA:0005118 ! middle lateral line primordium @@ -4086,7 +4085,7 @@ name: dorsal rectus namespace: zebrafish_anatomy def: "Extraocular muscle that inserts at the scleral corneal junction on the dorsal side of the eye. The dorsal rectus is innervated by the oculomotor nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions in the adult eye though they have distinct insertion sites in 5dpf fish." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Larval:Protruding-mouth. -synonym: "dorsal recti" EXACT PLURAL [] +synonym: "dorsal recti" EXACT OMO:0003004 [] synonym: "superior rectus" EXACT [ZFIN:ZDB-PUB-110512-18] xref: TAO:0000345 is_a: ZFA:0005145 ! muscle @@ -4141,7 +4140,7 @@ id: ZFA:0000350 name: epipleural namespace: zebrafish_anatomy def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "epipleurals" EXACT PLURAL [] +synonym: "epipleurals" EXACT OMO:0003004 [] xref: TAO:0000350 is_a: ZFA:0000526 ! intermuscular bone relationship: end ZFS:0000044 ! adult @@ -4176,7 +4175,7 @@ id: ZFA:0000353 name: fasciculus retroflexus namespace: zebrafish_anatomy def: "Paired fasciculus that connects the habenula to the interpeduncular nucleus. In zebrafish the fascicles seem to gather under the raphe nucleus and don't extend to the medulla." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-010601-11] -synonym: "fasciculus retroflexi" EXACT PLURAL [] +synonym: "fasciculus retroflexi" EXACT OMO:0003004 [] synonym: "habenulo-interpeduncular tract" EXACT [] synonym: "habenulointerpeduncular tract" EXACT [] synonym: "tractus habenulo-interpeduncularis" EXACT [] @@ -4190,7 +4189,7 @@ id: ZFA:0000354 name: gill namespace: zebrafish_anatomy def: "Compound organ that consists of gill filaments, gill lamellae, gill rakers and pharyngeal arches 3-7. The gills are responsible for primary gas exchange between the blood and the surrounding water." [http:http\://www.briancoad.com/Dictionary/DicPics/gill.htm] -synonym: "gills" EXACT PLURAL [] +synonym: "gills" EXACT OMO:0003004 [] xref: TAO:0000354 is_a: ZFA:0000496 ! compound organ relationship: develops_from ZFA:0001107 ! internal gill bud @@ -4214,7 +4213,7 @@ id: ZFA:0000356 name: gill raker namespace: zebrafish_anatomy def: "Dermal bone that is a small anterior projection present on all of pharyngeal arches 3-7. They support the gills. The rakers have epithelial denticles and both their gross and fine structure serves to retain food particles in the mouth." [http://www.briancoad.com/Dictionary/G.htm, ZFIN:ZDB-PUB-081008-12] -synonym: "gill rakers" EXACT PLURAL [] +synonym: "gill rakers" EXACT OMO:0003004 [] xref: TAO:0000356 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -4283,7 +4282,7 @@ id: ZFA:0000363 name: hypobranchial bone namespace: zebrafish_anatomy def: "Hypobranchials are the most medial of the bilaterally paired elements of the gill arches. Hypobranchial ossifications 1-3 (of 4) develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 2. The hypobranchials articulate anteromedially with the basibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "hypobranchial bones" EXACT PLURAL [] +synonym: "hypobranchial bones" EXACT OMO:0003004 [] xref: TAO:0000363 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001522 ! hypobranchial cartilage @@ -4298,7 +4297,7 @@ namespace: zebrafish_anatomy def: "Expanded and laterally flattened hemal arches and spines. They support the lepidotrichia of the caudal fin. The hypurals form ventral to the posterior tip of the dorsally-flexed notochord. In zebrafish condensation of the hypurals begins at approximately 6 dpf (4.1 mm NL, notochord length)." [ZFIN:ZDB-PUB-011008-1] synonym: "hyp" EXACT [] synonym: "hypuralia" EXACT [] -synonym: "hypurals" EXACT PLURAL [] +synonym: "hypurals" EXACT OMO:0003004 [] xref: TAO:0000364 is_a: ZFA:0000859 ! specialized hemal arch and spine relationship: end ZFS:0000044 ! adult @@ -4309,7 +4308,7 @@ id: ZFA:0000365 name: nasal bone namespace: zebrafish_anatomy def: "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish." [ZFIN:ZDB-PUB-961014-192] -synonym: "nasal bones" EXACT PLURAL [] +synonym: "nasal bones" EXACT OMO:0003004 [] xref: TAO:0000365 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -4362,7 +4361,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000370 name: intermediate thalamic nucleus namespace: zebrafish_anatomy -synonym: "intermediate thalamic nuclei" EXACT PLURAL [] +synonym: "intermediate thalamic nuclei" EXACT OMO:0003004 [] xref: TAO:0000370 is_a: ZFA:0005576 ! ventral thalamus nucleus relationship: end ZFS:0000044 ! adult @@ -4373,7 +4372,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000371 name: internal pharyngoclavicularis namespace: zebrafish_anatomy -synonym: "internal pharyngoclavicularae" EXACT PLURAL [] +synonym: "internal pharyngoclavicularae" EXACT OMO:0003004 [] xref: TAO:0000371 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -4402,7 +4401,7 @@ id: ZFA:0000374 name: lagena namespace: zebrafish_anatomy def: "Otolith organ comprised of the macula lagena and asteriscus. The lagena is part of the pars inferior. The lagena functions in the detection of sound." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "lagenas" EXACT PLURAL [] +synonym: "lagenas" EXACT OMO:0003004 [] xref: TAO:0000374 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -4437,7 +4436,7 @@ id: ZFA:0000379 name: lateral forebrain bundle diencephalon namespace: zebrafish_anatomy def: "Portion of the lateral forebrain bundle that lies in the diencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "lateral forebrain bundles diencephalon" EXACT PLURAL [] +synonym: "lateral forebrain bundles diencephalon" EXACT OMO:0003004 [] xref: TAO:0000379 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! adult @@ -4448,7 +4447,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000380 name: lateral lemniscus nucleus namespace: zebrafish_anatomy -synonym: "lateral lemniscus nuclei" EXACT PLURAL [] +synonym: "lateral lemniscus nuclei" EXACT OMO:0003004 [] xref: TAO:0000380 is_a: ZFA:0005577 ! tegmental nucleus relationship: end ZFS:0000044 ! adult @@ -4459,7 +4458,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000381 name: lateral line sensory nucleus namespace: zebrafish_anatomy -synonym: "lateral line sensory nuclei" EXACT PLURAL [] +synonym: "lateral line sensory nuclei" EXACT OMO:0003004 [] xref: TAO:0000381 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! adult @@ -4471,7 +4470,7 @@ id: ZFA:0000382 name: acellular anatomical structure namespace: zebrafish_anatomy def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "acellular anatomical structures" EXACT PLURAL [] +synonym: "acellular anatomical structures" EXACT OMO:0003004 [] xref: CARO:0000040 xref: TAO:0000382 is_a: ZFA:0000037 ! anatomical structure @@ -4484,7 +4483,7 @@ name: lateral rectus namespace: zebrafish_anatomy def: "Extraocular muscle that runs parallel to the long axis of the fish and inserts on the caudal side of the eye at the sclera-corneal . The lateral rectus muscles originate substantially posterior to the other rectus muscles. The lateral rectus is innervated by the abducens nerve. The unsegmented paraxial head mesoderm contributes to the lateral rectus." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Hatching:Pec-fin. -synonym: "lateral recti" EXACT PLURAL [] +synonym: "lateral recti" EXACT OMO:0003004 [] synonym: "posterior rectus" EXACT [ZFIN:ZDB-PUB-970121-6] xref: TAO:0000383 is_a: ZFA:0005145 ! muscle @@ -4497,7 +4496,7 @@ id: ZFA:0000384 name: levator arcus palatini namespace: zebrafish_anatomy def: "Mandibular muscle that inserts along the dorsolateral faces of the hyosymplectics." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2] -synonym: "levators arcus palatini" EXACT PLURAL [] +synonym: "levators arcus palatini" EXACT OMO:0003004 [] xref: TAO:0000384 is_a: ZFA:0000236 ! mandibular muscle relationship: develops_from ZFA:0007050 ! constrictor dorsalis @@ -4520,7 +4519,7 @@ id: ZFA:0000386 name: macula namespace: zebrafish_anatomy def: "Portion of tissue that is a patch of thickened, pseudostratified epithelium in the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "maculae" EXACT PLURAL [] +synonym: "maculae" EXACT OMO:0003004 [] synonym: "sensory macula" EXACT [] synonym: "sensory patch" EXACT [] xref: TAO:0000386 @@ -4572,7 +4571,7 @@ id: ZFA:0000390 name: medial preglomerular nucleus namespace: zebrafish_anatomy def: "Preglomerular nucleus which is located between the lateral and caudal preglomerular nuclei of the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "medial preglomerular nuclei" EXACT PLURAL [] +synonym: "medial preglomerular nuclei" EXACT OMO:0003004 [] xref: TAO:0000390 is_a: ZFA:0001662 ! preglomerular nucleus relationship: end ZFS:0000044 ! adult @@ -4631,7 +4630,7 @@ name: muscle pioneer somite 2 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 2" EXACT PLURAL [] +synonym: "muscle pioneers somite 2" EXACT OMO:0003004 [] xref: TAO:0000395 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -4675,7 +4674,7 @@ id: ZFA:0000399 name: secondary gustatory nucleus trigeminal nucleus namespace: zebrafish_anatomy def: "Nucleus that lies rostral to the isthmic primary nucleus." [ZFIN:ZDB-PUB-961014-1280] -synonym: "secondary gustatory nucleus trigeminal nuclei" EXACT PLURAL [] +synonym: "secondary gustatory nucleus trigeminal nuclei" EXACT OMO:0003004 [] xref: TAO:0000399 is_a: ZFA:0000433 ! sensory trigeminal nucleus relationship: end ZFS:0000044 ! adult @@ -4699,7 +4698,7 @@ id: ZFA:0000401 name: octaval nerve sensory nucleus namespace: zebrafish_anatomy synonym: "cranial nerve VIII sensory nucleus" EXACT [] -synonym: "octaval nerve sensory nuclei" EXACT PLURAL [] +synonym: "octaval nerve sensory nuclei" EXACT OMO:0003004 [] xref: TAO:0000401 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! adult @@ -4725,7 +4724,7 @@ id: ZFA:0000403 name: ovary namespace: zebrafish_anatomy def: "Female reproductive organ. The ovary is a bilobed cavitated organ located ventral to the swim bladder." [GOC:cvs, GOC:mh, ISBN:0199638098, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917] -synonym: "ovaries" EXACT PLURAL [] +synonym: "ovaries" EXACT OMO:0003004 [] xref: TAO:0000403 is_a: ZFA:0000413 ! gonad relationship: end ZFS:0000044 ! adult @@ -4763,7 +4762,7 @@ id: ZFA:0000406 name: parvocellular superficial pretectal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the superficial pretectum. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "parvocellular superficial pretectal nuclei" EXACT PLURAL [] +synonym: "parvocellular superficial pretectal nuclei" EXACT OMO:0003004 [] xref: TAO:0000406 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! adult @@ -4775,7 +4774,7 @@ id: ZFA:0000407 name: pectoral girdle namespace: zebrafish_anatomy def: "Anatomical cluster of paired dermal and endochondral bones that attaches to the dorso-posterior part of the cranium, and support the radials and pectoral fin. It consists of two components: the primary pectoral girdle consisting of the endochondral coracoid, scapula and mesocoracoid bones, and the secondary pectoral girdle consisting of the dermal posttemporal, supracleithrum, cleithrum and poscleithrum(thra) bones." [TAO:WD] -synonym: "pectoral girdles" EXACT PLURAL [] +synonym: "pectoral girdles" EXACT OMO:0003004 [] xref: TAO:0000407 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! adult @@ -4799,7 +4798,7 @@ id: ZFA:0000410 name: postcleithrum namespace: zebrafish_anatomy def: "Dermal bone that is part of the pectoral girdle and located ventral to the supracleithrum and posterior to the cleithrum. Postcleithral bones are paired and can vary up in number from a single pair (such as in zebrafish) to three pairs in other teleosts." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "postcleithra" EXACT PLURAL [] +synonym: "postcleithra" EXACT OMO:0003004 [] xref: TAO:0000410 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -4811,7 +4810,7 @@ id: ZFA:0000411 name: posterior crista primordium namespace: zebrafish_anatomy def: "Is an otic epithelium that will mature into the posterior crista." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "posterior crista primordia" EXACT PLURAL [] +synonym: "posterior crista primordia" EXACT OMO:0003004 [] xref: TAO:0000411 is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000035 ! larval:protruding-mouth @@ -4835,7 +4834,7 @@ id: ZFA:0000413 name: gonad namespace: zebrafish_anatomy def: "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis)." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "gonads" EXACT PLURAL [] +synonym: "gonads" EXACT OMO:0003004 [] synonym: "mature gonad" RELATED [] xref: TAO:0000413 is_a: ZFA:0001490 ! cavitated compound organ @@ -4907,7 +4906,7 @@ id: ZFA:0000419 name: pterosphenoid namespace: zebrafish_anatomy def: "Paired cartilage bones, flat and hexagonal in shape that contact the orbitosphenoid anteriorly. Roofed by the frontal and bordered posteriorly by the prootic and sphenotic, the pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pterosphenoids" EXACT PLURAL [] +synonym: "pterosphenoids" EXACT OMO:0003004 [] xref: TAO:0000419 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001515 ! taenia marginalis posterior @@ -4922,7 +4921,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000420 name: renal artery namespace: zebrafish_anatomy -synonym: "renal arteries" EXACT PLURAL [] +synonym: "renal arteries" EXACT OMO:0003004 [] xref: TAO:0000420 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! adult @@ -4944,7 +4943,7 @@ id: ZFA:0000422 name: retroarticular namespace: zebrafish_anatomy def: "The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "retroarticulars" EXACT PLURAL [] +synonym: "retroarticulars" EXACT OMO:0003004 [] xref: TAO:0000422 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0005904 ! retroarticular process @@ -4971,7 +4970,7 @@ id: ZFA:0000424 name: opercular lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva positioned posteriorly to the second arch skeletal element. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3] -synonym: "opercular lateral lines" EXACT PLURAL [] +synonym: "opercular lateral lines" EXACT OMO:0003004 [] xref: TAO:0000424 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! adult @@ -4999,7 +4998,7 @@ name: rostral parvocellular preoptic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the preoptic area and is the anterior continuation of the caudal parvocellular preoptic nucleus and is ventral to the telencephalon. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "anterior parvocellular preoptic nucleus" EXACT [] -synonym: "rostral parvocellular preoptic nuclei" EXACT PLURAL [] +synonym: "rostral parvocellular preoptic nuclei" EXACT OMO:0003004 [] xref: TAO:0000426 is_a: ZFA:0001680 ! parvocellular preoptic nucleus relationship: end ZFS:0000044 ! adult @@ -5062,7 +5061,7 @@ name: semicircular canal namespace: zebrafish_anatomy def: "Fluid-filled semicircular tubes, arranged orthogonally to each other in the inner ear. Each canal is associated with a crista that detects angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "scc" EXACT [] -synonym: "semicircular canals" EXACT PLURAL [] +synonym: "semicircular canals" EXACT OMO:0003004 [] synonym: "semicircular duct" EXACT [] xref: TAO:0000431 is_a: ZFA:0007114 ! anatomical conduit @@ -5075,7 +5074,7 @@ id: ZFA:0000433 name: sensory trigeminal nucleus namespace: zebrafish_anatomy synonym: "NVs" RELATED [] -synonym: "sensory trigeminal nuclei" EXACT PLURAL [] +synonym: "sensory trigeminal nuclei" EXACT OMO:0003004 [] xref: TAO:0000433 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! adult @@ -5146,7 +5145,7 @@ name: superficial pelvic abductor namespace: zebrafish_anatomy def: "Ventral, superficial, paired muscle that originates from the posterior part of the protractor ishii tendon and the midline. At the midline the paired muscles contact each other. These are short muscles that attach to all pelvic fin rays except ray 1 and ray 2." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "abductor superficialis pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] -synonym: "superficial pelvic abductors" EXACT PLURAL [] +synonym: "superficial pelvic abductors" EXACT OMO:0003004 [] xref: TAO:0000439 is_a: ZFA:0005269 ! abductor muscle relationship: end ZFS:0000044 ! adult @@ -5195,7 +5194,7 @@ id: ZFA:0000443 name: supraorbital lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva consisting of three neuromast positioned superior to the eye. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3] -synonym: "supraorbital lateral lines" EXACT PLURAL [] +synonym: "supraorbital lateral lines" EXACT OMO:0003004 [] synonym: "supraorbital line" EXACT [ZFIN:ZDB-PUB-000523-3] xref: TAO:0000443 is_a: ZFA:0001469 ! lateral line @@ -5272,7 +5271,7 @@ name: torus longitudinalis namespace: zebrafish_anatomy def: "Multi-tissue structure that is a paired longitudinal eminence of granular cells that develops from the alar plate and is attached to the tegmentum in the medial tectal ventricle. The torus longitudinalis only occurs in ray finned fishes." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "longitudinal torus" EXACT [] -synonym: "tori longitudinalis" EXACT PLURAL [] +synonym: "tori longitudinalis" EXACT OMO:0003004 [] xref: TAO:0000449 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001357 ! alar plate midbrain region @@ -5380,7 +5379,7 @@ namespace: zebrafish_anatomy def: "Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. The ventral rectus is innervated by the oculomotor nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Larval:Protruding-mouth. synonym: "inferior rectus" EXACT [ZFIN:ZDB-PUB-110512-18] -synonym: "ventral recti" EXACT PLURAL [] +synonym: "ventral recti" EXACT OMO:0003004 [] xref: TAO:0000457 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! adult @@ -5420,7 +5419,7 @@ id: ZFA:0000461 name: Weberian ossicle namespace: zebrafish_anatomy def: "A group of modified neural arches and spines of the first four vertebrae. These include, from anterior to posterior, the claustrum, scaphium, intercalarium, and tripus. The os suspensorium is considered to be a fifth ossicle." [ZFIN:ZDB-PUB-011008-1] -synonym: "Weberian ossicles" EXACT PLURAL [] +synonym: "Weberian ossicles" EXACT OMO:0003004 [] xref: TAO:0000461 is_a: ZFA:0001491 ! solid compound organ relationship: end ZFS:0000044 ! adult @@ -5432,7 +5431,7 @@ id: ZFA:0000462 name: abductor hyohyoid namespace: zebrafish_anatomy def: "Hyoid muscle that originates at the first branchiostegal ray and inserts in the mesial aponeurosis, meeting its contralateral counterpart. The abductor hyohyoid is responsible for expansion of the branchiostegal membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33] -synonym: "abductors hyohyoid" EXACT PLURAL [] +synonym: "abductors hyohyoid" EXACT OMO:0003004 [] synonym: "hyohyoideus abductor" EXACT [] xref: TAO:0000462 is_a: ZFA:0000521 ! hyoid muscle @@ -5444,7 +5443,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000463 name: branchial adductor namespace: zebrafish_anatomy -synonym: "adductors" EXACT PLURAL [] +synonym: "adductors" EXACT OMO:0003004 [] xref: TAO:0000463 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -5455,7 +5454,7 @@ id: ZFA:0000464 name: otic lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva positioned anterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3] -synonym: "otic lateral lines" EXACT PLURAL [] +synonym: "otic lateral lines" EXACT OMO:0003004 [] xref: TAO:0000464 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! adult @@ -5468,7 +5467,7 @@ name: adductor operculi namespace: zebrafish_anatomy def: "Is a dorsal, paired hyoid muscle that moves the auditory capsules with the opercles." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2] synonym: "adductor opercula" EXACT [] -synonym: "adductor operculae" EXACT PLURAL [] +synonym: "adductor operculae" EXACT OMO:0003004 [] xref: TAO:0000465 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! adult @@ -5479,7 +5478,7 @@ id: ZFA:0000466 name: anal depressor namespace: zebrafish_anatomy def: "Series of muscles that have an anterior attachment at posteriorlateral base of each ray and posterior attachment at the haemal spines. These muscles act in opposition to the anal erectors to lower the anal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] -synonym: "anal depressors" EXACT PLURAL [] +synonym: "anal depressors" EXACT OMO:0003004 [] synonym: "depressores anales" RELATED [ZFIN:ZDB-PUB-171118-8] xref: TAO:0000466 is_a: ZFA:0005270 ! depressor muscle @@ -5509,7 +5508,7 @@ id: ZFA:0000468 name: anterior crista primordium namespace: zebrafish_anatomy def: "Is an otic epithelium that will mature into the anterior crista." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "anterior crista primordia" EXACT PLURAL [] +synonym: "anterior crista primordia" EXACT OMO:0003004 [] xref: TAO:0000468 is_a: ZFA:0007068 ! otic epithelium relationship: end ZFS:0000035 ! larval:protruding-mouth @@ -5611,7 +5610,7 @@ id: ZFA:0000476 name: branchiostegal ray namespace: zebrafish_anatomy def: "Dermal bone that is a bilaterally paired and flattened element that supports the branchiostegal membrane. Three dermal branchiostegal rays form in the branchiostegal membrane ventral to the ceratohyal cartilage. The most posterior ray, branchiostegal 3, ossifies first (3.4 mm NL), and the most anterior ray, branchiostegal 1, ossifies last (5.5 mm NL). The most posterior two branchiostegals (2 and 3) insert externally on the ceratohyal; their anterodorsal tips are thickened triangles, and the rays are expanded. The bifurcated tip of the acinaciform anteriormost ray lies at the ventral margin of the ceratohyal." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "branchiostegal rays" EXACT PLURAL [] +synonym: "branchiostegal rays" EXACT OMO:0003004 [] xref: TAO:0000476 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -5701,7 +5700,7 @@ id: ZFA:0000485 name: central nucleus inferior lobe namespace: zebrafish_anatomy def: "Diencephalic nucleus which is part of the inferior lobe of the hypothalamus and consists of masses of large cells presumably migrated from the periventricular cell masses and receives signals from the secondary gustatory nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "central nucleus inferior lobes" EXACT PLURAL [] +synonym: "central nucleus inferior lobes" EXACT OMO:0003004 [] synonym: "central nucleus of the inferior lobe" EXACT [] synonym: "nucleus centralis lobi inferioris hypothalami" EXACT [] xref: TAO:0000485 @@ -5748,7 +5747,7 @@ id: ZFA:0000488 name: ceratobranchial bone namespace: zebrafish_anatomy def: "Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. They articulate medially with the hypobranchials and laterally and dorsally with the epibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "ceratobranchial bones" EXACT PLURAL [] +synonym: "ceratobranchial bones" EXACT OMO:0003004 [] xref: TAO:0000488 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! adult @@ -5804,7 +5803,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000494 name: deep white zone namespace: zebrafish_anatomy -synonym: "deep white zones" EXACT PLURAL [] +synonym: "deep white zones" EXACT OMO:0003004 [] xref: TAO:0000494 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -5842,7 +5841,7 @@ name: pelvic adductor profundus namespace: zebrafish_anatomy def: "Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium, lies mostly parallel to the pelvic fin rays and attaches and inserts on the bases of all the pelvic fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "adductor profundus pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] -synonym: "pelvic adductors profundus" EXACT PLURAL [] +synonym: "pelvic adductors profundus" EXACT OMO:0003004 [] xref: TAO:0000497 is_a: ZFA:0005268 ! adductor muscle relationship: end ZFS:0000044 ! adult @@ -5870,7 +5869,7 @@ namespace: zebrafish_anatomy def: "The muscle that acts as an antagonist to the arrector ventralis, reversing the direction of the leading edge of the pectoral fin to initiate the upstroke." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] comment: Acts as antagonist to the ventral arrector ZDB-PUB-050920. synonym: "arrector dorsalis" EXACT [ZFIN:ZDB-PUB-050920-7] -synonym: "dorsal arrectors" EXACT PLURAL [] +synonym: "dorsal arrectors" EXACT OMO:0003004 [] xref: TAO:0000499 is_a: ZFA:0005275 ! arrector muscle relationship: develops_from ZFA:0005650 ! primitive pectoral fin adductor @@ -5882,7 +5881,7 @@ id: ZFA:0000500 name: dorsal erector namespace: zebrafish_anatomy def: "Dorsal fin muscle that moves individual rays the dorsal fin to an erect position. Antagonistic to dorsal depressor muscle. There is one dorsal erector for each dorsal fin lepidotrichium." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "dorsal erectors" EXACT PLURAL [] +synonym: "dorsal erectors" EXACT OMO:0003004 [] synonym: "erector dorsalis" EXACT [] xref: TAO:0000500 is_a: ZFA:0005267 ! erector muscle @@ -5915,7 +5914,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000503 name: dorsal oblique branchial muscle namespace: zebrafish_anatomy -synonym: "dorsal oblique branchial muscles" EXACT PLURAL [] +synonym: "dorsal oblique branchial muscles" EXACT OMO:0003004 [] xref: TAO:0000503 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -5925,7 +5924,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000504 name: dorsal retractor namespace: zebrafish_anatomy -synonym: "dorsal retractors" EXACT PLURAL [] +synonym: "dorsal retractors" EXACT OMO:0003004 [] xref: TAO:0000504 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -5966,7 +5965,7 @@ id: ZFA:0000507 name: epineural namespace: zebrafish_anatomy def: "Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g. Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "epineurals" EXACT PLURAL [] +synonym: "epineurals" EXACT OMO:0003004 [] xref: TAO:0000507 is_a: ZFA:0000526 ! intermuscular bone relationship: end ZFS:0000044 ! adult @@ -5977,7 +5976,7 @@ id: ZFA:0000508 name: pelvic radial namespace: zebrafish_anatomy def: "Internal skeletal supports of the pelvic fin." [TAO:curator] -synonym: "pelvic radials" EXACT PLURAL [] +synonym: "pelvic radials" EXACT OMO:0003004 [] xref: TAO:0000508 is_a: ZFA:0000271 ! radial relationship: end ZFS:0000044 ! adult @@ -5999,7 +5998,7 @@ relationship: start ZFS:0000025 ! segmentation:10-13 somites id: ZFA:0000510 name: external levatores namespace: zebrafish_anatomy -synonym: "external levators" EXACT PLURAL [] +synonym: "external levators" EXACT OMO:0003004 [] xref: TAO:0000510 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -6036,7 +6035,7 @@ name: fast muscle cell somite 1 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 1." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 1" EXACT PLURAL [] +synonym: "fast muscle cells somite 1" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 1" EXACT [] xref: TAO:0000513 is_a: ZFA:0009117 ! fast muscle cell @@ -6068,7 +6067,7 @@ namespace: zebrafish_anatomy alt_id: ZFA:0001352 def: "Tissue located on the ventral side of the optic tectum, that contains the cell bodies of most tectal neurons. It is adjacent to the tectal ventricle and opposite the eminentia granularis of the cerebellum. It also contains a neurogenic niche and has hypothalamic inputs. The dendrites of neurons from the periventricular grey zones project their apical dendrites to the stratum opticum and stratum fibrosum et griseum superficale and synapse with retinal axons that project to these layers." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-140919-7, ZFIN:ZDB-PUB-180207-5] synonym: "periventricular gray zone" EXACT [] -synonym: "periventricular grey zones" EXACT PLURAL [] +synonym: "periventricular grey zones" EXACT OMO:0003004 [] synonym: "periventricular layer" EXACT [ZFIN:ZDB-PUB-180207-5] synonym: "PGZ" EXACT [ZFIN:ZDB-PUB-140919-7] synonym: "strata periventriculare" EXACT [] @@ -6135,7 +6134,7 @@ id: ZFA:0000521 name: hyoid muscle namespace: zebrafish_anatomy def: "Muscles that insert into skeletal elements of pharyngeal arch 2 (hyoid arch). Dorsal hyoid muscles are innervated by small, posterior branches of the facial nerve VII. Ventral hyoid muscles are innervated by the hyoides ramus of VII." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-970819-13] -synonym: "hyoid muscles" EXACT PLURAL [] +synonym: "hyoid muscles" EXACT OMO:0003004 [] xref: TAO:0000521 is_a: ZFA:0001652 ! head muscle relationship: end ZFS:0000044 ! adult @@ -6149,7 +6148,7 @@ name: inferior hyohyoid namespace: zebrafish_anatomy def: "Hyoid muscle that originates at the anterior ceratohyals and inserts into the mesial aponeurosis, meeting its contralateral counterpart. The inferior hyohyoid is responsible for adduction of the hyoid arch." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33] synonym: "hyohyoideus inferior" RELATED [] -synonym: "inferior hyohyoids" EXACT PLURAL [] +synonym: "inferior hyohyoids" EXACT OMO:0003004 [] xref: TAO:0000522 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! adult @@ -6195,7 +6194,7 @@ id: ZFA:0000526 name: intermuscular bone namespace: zebrafish_anatomy def: "Axial bone which is a segmental ossification that forms in the myoseptum; found in teleosts fishes only." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "intermuscular bones" EXACT PLURAL [] +synonym: "intermuscular bones" EXACT OMO:0003004 [] xref: TAO:0000526 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! adult @@ -6221,7 +6220,7 @@ name: interradialis caudalis namespace: zebrafish_anatomy def: "Muscle of the caudal fin that attaches to the appendicular skeleton and attaches to the first long ray on the dorsal side of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060623-21] synonym: "IC" RELATED [] -synonym: "interradiali" EXACT PLURAL [] +synonym: "interradiali" EXACT OMO:0003004 [] synonym: "interradialis" EXACT [] xref: TAO:0000528 is_a: ZFA:0005145 ! muscle @@ -6262,7 +6261,7 @@ relationship: start ZFS:0000027 ! segmentation:20-25 somites id: ZFA:0000531 name: lateral column namespace: zebrafish_anatomy -synonym: "lateral columns" EXACT PLURAL [] +synonym: "lateral columns" EXACT OMO:0003004 [] xref: TAO:0000531 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! adult @@ -6286,7 +6285,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000533 name: lateral funiculus namespace: zebrafish_anatomy -synonym: "lateral funiculi" EXACT PLURAL [] +synonym: "lateral funiculi" EXACT OMO:0003004 [] xref: TAO:0000533 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -6313,7 +6312,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000535 name: lateral reticular nucleus namespace: zebrafish_anatomy -synonym: "lateral reticular nuclei" EXACT PLURAL [] +synonym: "lateral reticular nuclei" EXACT OMO:0003004 [] xref: TAO:0000535 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! adult @@ -6365,7 +6364,7 @@ name: locus coeruleus namespace: zebrafish_anatomy def: "The locus coeruleus is a widely projecting isthmal noradrenergic nucleus. It consists of between three and ten neurons, most of which have multiple, bilaterally projecting axons." [ZFIN:ZDB-PUB-961014-717] comment: Sometimes considered part of the reticular formation. -synonym: "loci coeruleus" EXACT PLURAL [] +synonym: "loci coeruleus" EXACT OMO:0003004 [] xref: TAO:0000539 is_a: ZFA:0001658 ! hindbrain nucleus relationship: end ZFS:0000044 ! adult @@ -6376,7 +6375,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000540 name: magnocellular octaval nucleus namespace: zebrafish_anatomy -synonym: "magnocellular octaval nuclei" EXACT PLURAL [] +synonym: "magnocellular octaval nuclei" EXACT OMO:0003004 [] xref: TAO:0000540 is_a: ZFA:0000401 ! octaval nerve sensory nucleus relationship: end ZFS:0000044 ! adult @@ -6388,7 +6387,7 @@ name: marginal blastomere namespace: zebrafish_anatomy def: "Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim -synonym: "marginal blastomeres" EXACT PLURAL [] +synonym: "marginal blastomeres" EXACT OMO:0003004 [] xref: TAO:0000541 is_a: ZFA:0000093 ! blastomere relationship: end ZFS:0000015 ! blastula:dome @@ -6399,7 +6398,7 @@ id: ZFA:0000542 name: medial column namespace: zebrafish_anatomy synonym: "medial column of the reticular formation" EXACT [] -synonym: "medial columns" EXACT PLURAL [] +synonym: "medial columns" EXACT OMO:0003004 [] xref: TAO:0000542 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! adult @@ -6492,7 +6491,7 @@ id: ZFA:0000550 name: naris namespace: zebrafish_anatomy def: "External openings to the nasal cavity." [GOC:mh, http://medical-dictionary.thefreedictionary.com/nares, ORCiD:0000-0001-9114-8737] -synonym: "nares" EXACT PLURAL [] +synonym: "nares" EXACT OMO:0003004 [] synonym: "nostril" EXACT [] xref: TAO:0000550 is_a: ZFA:0000292 ! surface structure @@ -6610,7 +6609,7 @@ id: ZFA:0000559 name: otolith organ namespace: zebrafish_anatomy def: "Cavitated compound organ that is a fluid filed chamber with a maculae on one surface and associated otolith tethered to the maculae." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "otolith organs" EXACT PLURAL [] +synonym: "otolith organs" EXACT OMO:0003004 [] xref: TAO:0000559 is_a: ZFA:0001490 ! cavitated compound organ relationship: end ZFS:0000044 ! adult @@ -6622,7 +6621,7 @@ id: ZFA:0000560 name: oviduct namespace: zebrafish_anatomy def: "Duct that connects ovary with cloacal chamber. In zebrafish the oviduct is a continuation of the ovary." [GOC:cvs, GOC:mh, ISBN:0199638098, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917] -synonym: "oviducts" EXACT PLURAL [] +synonym: "oviducts" EXACT OMO:0003004 [] xref: TAO:0000560 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! adult @@ -6666,7 +6665,7 @@ name: pelvic abductor profundus namespace: zebrafish_anatomy def: "Deep pelvic muscle that originates from the basipterygium and lies mainly parallel to the rays and attaches to the base of all the rays except ray 1." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "abductor profundus pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] -synonym: "pelvic abductors profundus" EXACT PLURAL [] +synonym: "pelvic abductors profundus" EXACT OMO:0003004 [] xref: TAO:0000564 is_a: ZFA:0005269 ! abductor muscle relationship: end ZFS:0000044 ! adult @@ -6678,7 +6677,7 @@ id: ZFA:0000565 name: pelvic girdle namespace: zebrafish_anatomy def: "Anatomical cluster that consists of the paired basipterygia which support the pelvic fin." [TAO:WD] -synonym: "pelvic girdles" EXACT PLURAL [] +synonym: "pelvic girdles" EXACT OMO:0003004 [] xref: TAO:0000565 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! adult @@ -6694,9 +6693,9 @@ def: "Patch of thickened, pseudostratified epithelium that is associated with th synonym: "caudal crista" EXACT [] synonym: "pc" EXACT [] synonym: "posterior crista ampullaris" EXACT [] -synonym: "posterior cristae" EXACT PLURAL [] +synonym: "posterior cristae" EXACT OMO:0003004 [] synonym: "posterior semicircular canal sensory patch" EXACT [] -synonym: "posterior semicircular canal sensory patches" EXACT PLURAL [] +synonym: "posterior semicircular canal sensory patches" EXACT OMO:0003004 [] xref: TAO:0000566 is_a: ZFA:0007068 ! otic epithelium relationship: develops_from ZFA:0000411 ! posterior crista primordium @@ -6709,7 +6708,7 @@ id: ZFA:0000567 name: premaxilla namespace: zebrafish_anatomy def: "The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "premaxillae" EXACT PLURAL [] +synonym: "premaxillae" EXACT OMO:0003004 [] xref: TAO:0000567 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -6793,7 +6792,7 @@ id: ZFA:0000575 name: prootic namespace: zebrafish_anatomy def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. The prootic bear foramina that accommodate branches of the trigeminal and facial nerves." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "prootics" EXACT PLURAL [] +synonym: "prootics" EXACT OMO:0003004 [] xref: TAO:0000575 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001423 ! parachordal cartilage @@ -6830,7 +6829,7 @@ id: ZFA:0000577 name: renal portal vein namespace: zebrafish_anatomy def: "Afferent vein that supplies the kidney." [GOC:cvs, ISBN:9781118222942, ORCiD:0000-0002-2244-7917] -synonym: "renal portal veins" EXACT PLURAL [] +synonym: "renal portal veins" EXACT OMO:0003004 [] xref: TAO:0000577 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! adult @@ -6910,7 +6909,7 @@ id: ZFA:0000583 name: scapula namespace: zebrafish_anatomy def: "Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen." [TAO:GA_TG] -synonym: "scapulae" EXACT PLURAL [] +synonym: "scapulae" EXACT OMO:0003004 [] xref: TAO:0000583 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001455 ! scapulocoracoid @@ -6967,7 +6966,7 @@ synonym: "auditory ganglion" EXACT [] synonym: "gVIII" EXACT [] synonym: "octaval ganglion" EXACT [] synonym: "sag" EXACT [] -synonym: "statoacoustic ganglia" EXACT PLURAL [] +synonym: "statoacoustic ganglia" EXACT OMO:0003004 [] xref: TAO:0000588 is_a: ZFA:0000013 ! cranial ganglion relationship: develops_from ZFA:0000138 ! otic placode @@ -7014,7 +7013,7 @@ name: superficial pelvic adductor namespace: zebrafish_anatomy def: "Superficial, dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto all pelvic fin rays except ray 1." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "adductor superficialis pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] -synonym: "superficial pelvic adductors" EXACT PLURAL [] +synonym: "superficial pelvic adductors" EXACT OMO:0003004 [] xref: TAO:0000592 is_a: ZFA:0005268 ! adductor muscle relationship: end ZFS:0000044 ! adult @@ -7037,7 +7036,7 @@ id: ZFA:0000594 name: supracleithrum namespace: zebrafish_anatomy def: "Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal." [TAO:GA_TG, TAO:WD] -synonym: "supracleithra" EXACT PLURAL [] +synonym: "supracleithra" EXACT OMO:0003004 [] xref: TAO:0000594 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -7084,7 +7083,7 @@ id: ZFA:0000598 name: testis namespace: zebrafish_anatomy def: "Male reproductive organ. Adult zebrafish testes are paired organs forming elongated structures, internally organized into tubules. These tubules are formed by seminiferous epithelium containing cysts of spermatogonia and spermatocytes surrounded by somatic support cells, called Sertoli cells. Cysts are arranged around a lumen containing spermatozoa that is connected to the efferent ducts. The interstitial regions between the tubules contain the steroid-producing Leydig cells, connective tissue, and blood vessels." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-161215-23] -synonym: "testes" EXACT PLURAL [] +synonym: "testes" EXACT OMO:0003004 [] xref: TAO:0000598 is_a: ZFA:0000413 ! gonad relationship: end ZFS:0000044 ! adult @@ -7125,7 +7124,7 @@ name: pretectal periventricular nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the synencephalon and the pretectum and is located periventricularly. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "periventricular pretectum" EXACT [] -synonym: "pretectal periventricular nuclei" EXACT PLURAL [] +synonym: "pretectal periventricular nuclei" EXACT OMO:0003004 [] xref: TAO:0000601 is_a: ZFA:0001659 ! diencephalic nucleus relationship: end ZFS:0000044 ! adult @@ -7138,7 +7137,7 @@ id: ZFA:0000602 name: uroneural namespace: zebrafish_anatomy def: "Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostral to caudal. An uroneural is a paired membrane bone." [http://citebank.org/node/36904, ISSN:0362-2525, TAO:WD] -synonym: "uroneurals" EXACT PLURAL [] +synonym: "uroneurals" EXACT OMO:0003004 [] xref: TAO:0000602 is_a: ZFA:0001066 ! neural arch relationship: end ZFS:0000044 ! adult @@ -7151,7 +7150,7 @@ name: valvula cerebelli namespace: zebrafish_anatomy def: "Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] synonym: "valvula" RELATED [] -synonym: "valvula cerebellum" EXACT PLURAL [] +synonym: "valvula cerebellum" EXACT OMO:0003004 [] xref: TAO:0000603 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -7172,7 +7171,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000605 name: ventral funiculus namespace: zebrafish_anatomy -synonym: "ventral funiculi" EXACT PLURAL [] +synonym: "ventral funiculi" EXACT OMO:0003004 [] xref: TAO:0000605 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -7183,7 +7182,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000606 name: ventral oblique branchial muscle namespace: zebrafish_anatomy -synonym: "ventral oblique branchial muscles" EXACT PLURAL [] +synonym: "ventral oblique branchial muscles" EXACT OMO:0003004 [] xref: TAO:0000606 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -7249,8 +7248,8 @@ name: protractor hyoidei namespace: zebrafish_anatomy def: "Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII. Formed by the intermandibularis posterior and ventral interhyoideus." [TAO:WD, ZFIN:ZDB-PUB-080306-33] comment: Source: Winterbottom, R. 1973. A Descriptive Synonymy of the Striated Muscles of the Teleostei. Proceedings of the Academy of Natural Sciences of Philadelphia, Vol. 125 (1973), pp. 225-317.\n\nIn the zebrafish, as in most other teleosts, the interhyoideus becomes associated with the intermandibularis posterior, forming the protractor hyoideus. ZDB-PUB-080306-33. -synonym: "protractor hyoideus" EXACT PLURAL [] -synonym: "protractors hyoidei" EXACT PLURAL [] +synonym: "protractor hyoideus" EXACT OMO:0003004 [] +synonym: "protractors hyoidei" EXACT OMO:0003004 [] xref: TAO:0000612 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! adult @@ -7261,7 +7260,7 @@ id: ZFA:0000614 name: abductor profundus namespace: zebrafish_anatomy def: "Abductor muscle that develops from the primitive pectoral fin abductor. It originates along the anterior skeletal flange of the pectoral girdle. The abductor profundus bundles insert onto the fin ray base proximal processes of all fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] -synonym: "abductors profundus" EXACT PLURAL [] +synonym: "abductors profundus" EXACT OMO:0003004 [] xref: TAO:0000614 is_a: ZFA:0005269 ! abductor muscle relationship: develops_from ZFA:0005651 ! primitive pectoral fin abductor @@ -7274,7 +7273,7 @@ id: ZFA:0000615 name: adductor arcus palatini namespace: zebrafish_anatomy def: "Hyoid muscle that originates at the parasphenoid and inserts into the mesial sides of the hyomandibula, metapterygoid and entopterygoid. The Adductor arcus palatini is responsible for suspensorial adduction." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-080306-33] -synonym: "adductors arcus palatini" EXACT PLURAL [] +synonym: "adductors arcus palatini" EXACT OMO:0003004 [] xref: TAO:0000615 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! adult @@ -7285,7 +7284,7 @@ id: ZFA:0000616 name: adductor profundus namespace: zebrafish_anatomy def: "Small thin adductor muscle that is part of the pectoral fin. The origin of the adductor profundus lies along the developing anterior skeletal flange of the pectoral girdle. The adductor profundus develops from the primitive pectoral fin adductor." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] -synonym: "adductors profundus" EXACT PLURAL [] +synonym: "adductors profundus" EXACT OMO:0003004 [] xref: TAO:0000616 is_a: ZFA:0005268 ! adductor muscle relationship: develops_from ZFA:0005650 ! primitive pectoral fin adductor @@ -7298,7 +7297,7 @@ id: ZFA:0000617 name: anal erector namespace: zebrafish_anatomy def: "Series of muscles that have a distal attachment at the anteriolateral base of each ray and spike and a proximal attachment to the haemal spines. A tendon runs along one third the dorsoventral length of the muscle toward the attachment at the haemal spine. These muscles act in opposition to the anal depressors to raise the anal fin rays." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] -synonym: "anal erectors" EXACT PLURAL [] +synonym: "anal erectors" EXACT OMO:0003004 [] synonym: "erectores anales" EXACT [ZFIN:ZDB-PUB-171118-8] xref: TAO:0000617 is_a: ZFA:0005267 ! erector muscle @@ -7327,9 +7326,9 @@ alt_id: ZFA:0000273 def: "Patch of thickened, pseudostratified epithelium that is associated with the anterior semicircular canal. It consists of regular arrays of sensory hair cells interspersed with supporting cells. The anterior crista has its own characteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "ac" EXACT [] synonym: "anterior crista ampullaris" EXACT [] -synonym: "anterior cristae" EXACT PLURAL [] +synonym: "anterior cristae" EXACT OMO:0003004 [] synonym: "anterior semicircular canal sensory patch" EXACT [] -synonym: "anterior semicircular canal sensory patches" EXACT PLURAL [] +synonym: "anterior semicircular canal sensory patches" EXACT OMO:0003004 [] synonym: "rostral crista" EXACT [] xref: TAO:0000619 is_a: ZFA:0007068 ! otic epithelium @@ -7359,7 +7358,7 @@ id: ZFA:0000621 name: quadrate namespace: zebrafish_anatomy def: "The quadrate is the dorsal bone in the jaw joint with the anguloarticular of the lower jaw. Ossification of the quadrate, a cartilage bone, begins as a posteriorly projecting membranous spine between the symplectic cartilage and the preopercle (5.1 mm NL). The body of the quadrate ossifies first at the ball-and-socket articulation with the anguloarticular (6.5 mm). The adult quadrate is shaped roughly like an inverted triangle with a long, posteriorly projecting spine off its posteroventral edge. The presence of a posteroventral or posterior process of the quadrate is a synapomorphy of Teleostei." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "quadrates" EXACT PLURAL [] +synonym: "quadrates" EXACT OMO:0003004 [] xref: TAO:0000621 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001399 ! palatoquadrate cartilage @@ -7461,7 +7460,7 @@ id: ZFA:0000630 name: caudal parvocellular preoptic nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the preoptic area and is the posterior continuation of the rostral parvocellular preoptic nucleus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] -synonym: "caudal parvocellular preoptic nuclei" EXACT PLURAL [] +synonym: "caudal parvocellular preoptic nuclei" EXACT OMO:0003004 [] synonym: "posterior parvocellular preoptic nucleus" EXACT [] xref: TAO:0000630 is_a: ZFA:0001680 ! parvocellular preoptic nucleus @@ -7474,7 +7473,7 @@ id: ZFA:0000631 name: caudal pretectal nucleus namespace: zebrafish_anatomy def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "caudal pretectal nuclei" EXACT PLURAL [] +synonym: "caudal pretectal nuclei" EXACT OMO:0003004 [] synonym: "posterior pretectal nucleus" EXACT [] xref: TAO:0000631 is_a: ZFA:0001659 ! diencephalic nucleus @@ -7583,7 +7582,7 @@ id: ZFA:0000640 name: cornea namespace: zebrafish_anatomy def: "Multi-tissue structure that forms the transparent front part of the eye, covering the iris, pupil and anterior chamber." [GOC:mh, http://www.encyclopedia.thefreedictionary.com/cornea, ORCiD:0000-0001-9114-8737] -synonym: "corneas" EXACT PLURAL [] +synonym: "corneas" EXACT OMO:0003004 [] xref: TAO:0000640 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001688 ! corneal primordium @@ -7596,7 +7595,7 @@ id: ZFA:0000641 name: cranial nerve namespace: zebrafish_anatomy def: "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "cranial nerves" EXACT PLURAL [] +synonym: "cranial nerves" EXACT OMO:0003004 [] xref: TAO:0000641 is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! adult @@ -7630,7 +7629,7 @@ id: ZFA:0000644 name: dental plate namespace: zebrafish_anatomy comment: "Dermal tooth plates are variable structures. During upper pharyngeal arch development in Astatotilapia elegans, dermal tooth plates are formed entirely of fused tooth pedicels (Huys-seune, 1983). However, in lower pharyngeals of the same species, teeth attach to a preexisting plate (Vandewalle et al., 1994). In other teleosts (e.g., cyprinid fifth ceratobranchials), there is no tooth plate per se, because tooth pedicels do not fuse to one another, but each fuses to the endochondral bone separately (see Gosline, 1985)."\nConsider ZFA:0001239 ceratobranchial 5 bone or ZFA:0000694 ceratobranchial 5 tooth -synonym: "dental plates" EXACT PLURAL [] +synonym: "dental plates" EXACT OMO:0003004 [] xref: TAO:0000644 is_obsolete: true @@ -7649,7 +7648,7 @@ id: ZFA:0000646 name: anal fin distal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "anal fin distal radials" EXACT PLURAL [] +synonym: "anal fin distal radials" EXACT OMO:0003004 [] xref: TAO:0000646 is_a: ZFA:0001646 ! anal fin radial relationship: end ZFS:0000044 ! adult @@ -7696,7 +7695,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000650 name: dorsal motor root of V namespace: zebrafish_anatomy -synonym: "dorsal motor roots of V" EXACT PLURAL [] +synonym: "dorsal motor roots of V" EXACT OMO:0003004 [] xref: TAO:0000650 is_a: ZFA:0001663 ! cranial nerve root relationship: end ZFS:0000044 ! adult @@ -7709,7 +7708,7 @@ name: dorsal pelvic arrector namespace: zebrafish_anatomy def: "Dorsal pelvic fin muscle that originates at the anterior side of the basipterygium and inserts onto the base of the first pelvic fin ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8] synonym: "arrector dorsalis pelvicus" EXACT [ZFIN:ZDB-PUB-171118-8] -synonym: "dorsal pelvic arrectors" EXACT PLURAL [] +synonym: "dorsal pelvic arrectors" EXACT OMO:0003004 [] xref: TAO:0000651 is_a: ZFA:0005275 ! arrector muscle relationship: end ZFS:0000044 ! adult @@ -7768,7 +7767,7 @@ id: ZFA:0000656 name: ectopterygoid namespace: zebrafish_anatomy def: "The ectopterygoid is dermal bone located at the anterior part of the palatoquadrate. It is first visible as a very thin ossification along the anteroventral border of the palatoquadrate cartilage (6.4 mm). In adults it is a long sliver of bone that is narrow anteriorly where it meets the entopterygoid in a synostosis. It is slightly wider at its posterior synostosis with the quadrate." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "ectopterygoids" EXACT PLURAL [] +synonym: "ectopterygoids" EXACT OMO:0003004 [] xref: TAO:0000656 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -7796,7 +7795,7 @@ id: ZFA:0000658 name: epibranchial bone namespace: zebrafish_anatomy def: "Pharyngeal arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. Epibranchials are dorsal parts of the gill arches. Epibranchials 1-4 ossify in the epibranchial cartilages in a posterior to anterior progression. Gill rakers are present on the anterior and posterior edges of epibranchials 2 and 4 and the posterior edge of epibranchial 1. A reduced gill raker is present on the anterior margin of epibranchial 1 in some specimens." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "epibranchial bones" EXACT PLURAL [] +synonym: "epibranchial bones" EXACT OMO:0003004 [] xref: TAO:0000658 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001527 ! epibranchial cartilage @@ -7820,7 +7819,7 @@ id: ZFA:0000661 name: exoccipital namespace: zebrafish_anatomy def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "exoccipitals" EXACT PLURAL [] +synonym: "exoccipitals" EXACT OMO:0003004 [] xref: TAO:0000661 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001423 ! parachordal cartilage @@ -7836,7 +7835,7 @@ relationship: start ZFS:0000039 ! larval:days 7-13 id: ZFA:0000662 name: external pharyngoclavicularis namespace: zebrafish_anatomy -synonym: "external pharyngoclavicularae" EXACT PLURAL [] +synonym: "external pharyngoclavicularae" EXACT OMO:0003004 [] xref: TAO:0000662 is_a: ZFA:0000172 ! branchial muscle relationship: end ZFS:0000044 ! adult @@ -7886,7 +7885,7 @@ id: ZFA:0000666 name: filamental artery namespace: zebrafish_anatomy def: "Artery of the gill filament." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "filamental arteries" EXACT PLURAL [] +synonym: "filamental arteries" EXACT OMO:0003004 [] xref: TAO:0000666 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! adult @@ -7899,7 +7898,7 @@ id: ZFA:0000667 name: gill filament namespace: zebrafish_anatomy def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [GOC:mh, http://www.briancoad.com/Dictionary/G.htm, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961014-576] -synonym: "gill filaments" EXACT PLURAL [] +synonym: "gill filaments" EXACT OMO:0003004 [] xref: TAO:0000667 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -7940,7 +7939,7 @@ id: ZFA:0000670 name: hepatic vein namespace: zebrafish_anatomy def: "Vein that carries blood away from the liver." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "hepatic veins" EXACT PLURAL [] +synonym: "hepatic veins" EXACT OMO:0003004 [] xref: TAO:0000670 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! adult @@ -7990,7 +7989,7 @@ id: ZFA:0000674 name: interopercle namespace: zebrafish_anatomy def: "Dermal bone that is located anterior to the subopercle and lying below and slightly ventral to the horizontal limb of the preopercle. The interopercle is a paired bone." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "interopercles" EXACT PLURAL [] +synonym: "interopercles" EXACT OMO:0003004 [] xref: TAO:0000674 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -8018,7 +8017,7 @@ relationship: start ZFS:0000027 ! segmentation:20-25 somites id: ZFA:0000677 name: segmental intercostal artery namespace: zebrafish_anatomy -synonym: "segmental intercostal arteries" EXACT PLURAL [] +synonym: "segmental intercostal arteries" EXACT OMO:0003004 [] xref: TAO:0000677 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! adult @@ -8030,7 +8029,7 @@ name: hair cell anterior macula namespace: zebrafish_anatomy def: "Specialized neuronal receptor cells of the anterior macula. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [MESH:68018069, ZFIN:ZDB-PUB-961014-576] subset: cell_slim -synonym: "sensory hair cells anterior macula" EXACT PLURAL [] +synonym: "sensory hair cells anterior macula" EXACT OMO:0003004 [] xref: TAO:0000678 is_a: ZFA:0009366 ! hair cell relationship: develops_from ZFA:0001098 ! immature hair cell anterior macula @@ -8042,7 +8041,7 @@ relationship: start ZFS:0000029 ! pharyngula:prim-5 id: ZFA:0000679 name: sensory root of facial nerve namespace: zebrafish_anatomy -synonym: "sensory roots of facial nerves" EXACT PLURAL [] +synonym: "sensory roots of facial nerves" EXACT OMO:0003004 [] xref: TAO:0000679 is_a: ZFA:0001663 ! cranial nerve root relationship: end ZFS:0000044 ! adult @@ -8054,7 +8053,7 @@ id: ZFA:0000680 name: sinoatrial valve namespace: zebrafish_anatomy def: "Heart valve that forms between the atrium and the sinus venosus." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] -synonym: "sinoatrial valves" EXACT PLURAL [] +synonym: "sinoatrial valves" EXACT OMO:0003004 [] xref: TAO:0000680 is_a: ZFA:0005065 ! heart valve relationship: develops_from ZFA:0001317 ! endocardial cushion @@ -8068,7 +8067,7 @@ id: ZFA:0000681 name: neural postzygapophysis namespace: zebrafish_anatomy def: "Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "neural postzygapophyses" EXACT PLURAL [] +synonym: "neural postzygapophyses" EXACT OMO:0003004 [] synonym: "neural postzygopophysis" EXACT [] xref: TAO:0000681 is_a: ZFA:0001591 ! endochondral bone @@ -8080,7 +8079,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000682 name: spinal artery namespace: zebrafish_anatomy -synonym: "spinal arteries" EXACT PLURAL [] +synonym: "spinal arteries" EXACT OMO:0003004 [] xref: TAO:0000682 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! adult @@ -8115,7 +8114,7 @@ name: superficial abductor namespace: zebrafish_anatomy def: "Abductor muscle that develops from the primitive pectoral fin abductor. The abductor superficialis originates along the anterior skeletal flange of the pectoral girdle, the bundles insert to fin ray base distal processes." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] synonym: "abductor superficialis" EXACT [ZFIN:ZDB-PUB-050920-7] -synonym: "superficial abductors" EXACT PLURAL [] +synonym: "superficial abductors" EXACT OMO:0003004 [] xref: TAO:0000685 is_a: ZFA:0005269 ! abductor muscle relationship: develops_from ZFA:0005651 ! primitive pectoral fin abductor @@ -8128,7 +8127,7 @@ id: ZFA:0000686 name: superficial grey and white zone namespace: zebrafish_anatomy synonym: "superficial gray and white zone" EXACT [] -synonym: "superficial grey and white zones" EXACT PLURAL [] +synonym: "superficial grey and white zones" EXACT OMO:0003004 [] xref: TAO:0000686 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -8187,7 +8186,7 @@ id: ZFA:0000691 name: supraorbital bone namespace: zebrafish_anatomy def: "Paired dermal bones that form the anterodorsal margin of the orbit." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "supraorbital bones" EXACT PLURAL [] +synonym: "supraorbital bones" EXACT OMO:0003004 [] xref: TAO:0000691 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -8200,7 +8199,7 @@ id: ZFA:0000692 name: symplectic namespace: zebrafish_anatomy def: "The symplectic is an irregularly rod-shaped cartilage replacement bone articulating with the hyomandibular and quadrate." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "symplectics" EXACT PLURAL [] +synonym: "symplectics" EXACT OMO:0003004 [] xref: TAO:0000692 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001422 ! hyosymplectic cartilage @@ -8225,7 +8224,7 @@ name: ceratobranchial 5 tooth namespace: zebrafish_anatomy def: "Is a multi-tissue structure composed of dentine, enameloid and tooth pulp. The tips of the ceratobranchial 5 teeth form before the ceratobranchial itself (3.0 mm NL). As they grow ventrally, they meet the perichondrally ossified surface of ceratobranchial 5 and become firmly ankylosed to the bone. Ceratobranchial teeth are the only teeth present in zebrafish and other cypriniforms." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pharyngeal tooth" EXACT [] -synonym: "teeth" EXACT PLURAL [] +synonym: "teeth" EXACT OMO:0003004 [] synonym: "tooth" EXACT [] xref: TAO:0000694 is_a: ZFA:0001488 ! multi-tissue structure @@ -8240,7 +8239,7 @@ id: ZFA:0000695 name: labial cavity namespace: zebrafish_anatomy def: "The anatomical space located between the lips and the oral valves." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "labial cavities" EXACT PLURAL [] +synonym: "labial cavities" EXACT OMO:0003004 [] xref: TAO:0000695 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! adult @@ -8314,7 +8313,7 @@ namespace: zebrafish_anatomy def: "Muscle that is important in controlling the leading edge of the pectoral fin in the juvenile zebrafish, particularly during the initiation of the downstroke." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050920-7] comment: Acts as antagonist to the dorsal arrector. synonym: "arrector ventralis" EXACT [ZFIN:ZDB-PUB-050920-7] -synonym: "ventral arrectors" EXACT PLURAL [] +synonym: "ventral arrectors" EXACT OMO:0003004 [] xref: TAO:0000701 is_a: ZFA:0005275 ! arrector muscle relationship: develops_from ZFA:0005651 ! primitive pectoral fin abductor @@ -8326,7 +8325,7 @@ relationship: start ZFS:0000040 ! larval:days 14-20 id: ZFA:0000702 name: ventral horn spinal cord namespace: zebrafish_anatomy -synonym: "ventral horns spinal cord" EXACT PLURAL [] +synonym: "ventral horns spinal cord" EXACT OMO:0003004 [] xref: TAO:0000702 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -8348,7 +8347,7 @@ id: ZFA:0000704 name: ventral pelvic arrector namespace: zebrafish_anatomy def: "Deep, narrow muscle that arises anteriorly and laterally of the pelvic abductor profundus. It attaches to the first pelvic ray." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-171118-8v] -synonym: "ventral pelvic arrectors" EXACT PLURAL [] +synonym: "ventral pelvic arrectors" EXACT OMO:0003004 [] xref: TAO:0000704 is_a: ZFA:0005275 ! arrector muscle relationship: end ZFS:0000044 ! adult @@ -8360,7 +8359,7 @@ id: ZFA:0000705 name: ventral root namespace: zebrafish_anatomy def: "The efferent motor portion of the spinal nerve root." [http://en.wikipedia.org/wiki/Nerve_root] -synonym: "ventral roots" EXACT PLURAL [] +synonym: "ventral roots" EXACT OMO:0003004 [] xref: TAO:0000705 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -8394,7 +8393,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000708 name: ventrolateral optic tract namespace: zebrafish_anatomy -synonym: "ventrolateral optic tracts" EXACT PLURAL [] +synonym: "ventrolateral optic tracts" EXACT OMO:0003004 [] xref: TAO:0000708 is_a: ZFA:0000338 ! diencephalic white matter relationship: end ZFS:0000044 ! adult @@ -8405,7 +8404,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000709 name: vestibulo-spinal tract namespace: zebrafish_anatomy -synonym: "vestibulo-spinal tracts" EXACT PLURAL [] +synonym: "vestibulo-spinal tracts" EXACT OMO:0003004 [] xref: TAO:0000709 is_a: ZFA:0000318 ! brainstem and spinal white matter relationship: end ZFS:0000044 ! adult @@ -8429,7 +8428,7 @@ name: DEL namespace: zebrafish_anatomy def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast." [ZFIN:ZDB-PUB-961014-576] synonym: "deep cell layer" EXACT [ZFIN:ZDB-PUB-961014-576] -synonym: "DEL cells" EXACT PLURAL [] +synonym: "DEL cells" EXACT OMO:0003004 [] xref: TAO:0000711 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0001473 ! deep blastomere @@ -8454,7 +8453,7 @@ id: ZFA:0000713 name: abducens motor nucleus namespace: zebrafish_anatomy def: "Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain." [GOC:mh, ISBN:3764351209, ORCiD:0000-0001-9114-8737] -synonym: "abducens motor nuclei" EXACT PLURAL [] +synonym: "abducens motor nuclei" EXACT OMO:0003004 [] synonym: "abducens nucleus" EXACT [] synonym: "motor nucleus VI" EXACT [] synonym: "nVI" EXACT [] @@ -8482,7 +8481,7 @@ id: ZFA:0000715 name: adductor hyohyoid namespace: zebrafish_anatomy def: "Hyoid muscle that originates at the opercle and subopercle and inserts into the branchiostegal rays. The adductor hyohyoid is responsible for constriction of the branchiostegal membrane." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-080306-33] -synonym: "adductors hyohyoid" EXACT PLURAL [] +synonym: "adductors hyohyoid" EXACT OMO:0003004 [] synonym: "hyohyoidei adductores" EXACT [] xref: TAO:0000715 is_a: ZFA:0000521 ! hyoid muscle @@ -8531,7 +8530,7 @@ name: slow muscle cell somite 21 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 21." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 21" EXACT PLURAL [] +synonym: "slow muscle cells somite 21" EXACT OMO:0003004 [] xref: TAO:0000719 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -8544,7 +8543,7 @@ name: slow muscle cell somite 24 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 24." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 24" EXACT PLURAL [] +synonym: "slow muscle cells somite 24" EXACT OMO:0003004 [] xref: TAO:0000720 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -8557,7 +8556,7 @@ name: slow muscle cell somite 27 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 27." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 27" EXACT PLURAL [] +synonym: "slow muscle cells somite 27" EXACT OMO:0003004 [] xref: TAO:0000721 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -8570,7 +8569,7 @@ name: slow muscle cell somite 3 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 3" EXACT PLURAL [] +synonym: "slow muscle cells somite 3" EXACT OMO:0003004 [] xref: TAO:0000722 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -8583,7 +8582,7 @@ name: slow muscle cell somite 5 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 5" EXACT PLURAL [] +synonym: "slow muscle cells somite 5" EXACT OMO:0003004 [] xref: TAO:0000723 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -8596,7 +8595,7 @@ name: slow muscle cell somite 8 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 8" EXACT PLURAL [] +synonym: "slow muscle cells somite 8" EXACT OMO:0003004 [] xref: TAO:0000724 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -8700,7 +8699,7 @@ name: preural vertebra namespace: zebrafish_anatomy def: "Vertebra which are the three most posterior vertebra supporting the caudal fin." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "caudal fin vertebra" EXACT [] -synonym: "specialized centra/vertebrae" EXACT PLURAL [] +synonym: "specialized centra/vertebrae" EXACT OMO:0003004 [] xref: TAO:0000734 is_a: ZFA:0000326 ! caudal vertebra relationship: end ZFS:0000044 ! adult @@ -8713,7 +8712,7 @@ name: hemal postzygapophysis namespace: zebrafish_anatomy def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "haemal postzygapophysis" EXACT [] -synonym: "hemal postzygapophyses" EXACT PLURAL [] +synonym: "hemal postzygapophyses" EXACT OMO:0003004 [] synonym: "hemal postzygopophysis" EXACT [] xref: TAO:0000735 is_a: ZFA:0001591 ! endochondral bone @@ -8739,7 +8738,7 @@ name: dorsal oblique extraocular muscle namespace: zebrafish_anatomy def: "Extraocular muscle innervated by the trochlear nerve. The dorsal rectus and dorsal oblique muscles have overlapping insertions at the scleral-corneal junction on the dorsal side of the adult eye, though they have distinct insertion sites in 5dpf fish. The dorsal oblique originates separately from the rectus muscles. The unsegmented paraxial head mesoderm contributes to the dorsal oblique muscles. All the oblique extraocular muscles originate together from the anterior ethmoid plate." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-110512-18, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Larval:Protruding-mouth. -synonym: "dorsal oblique extraocular muscles" EXACT PLURAL [] +synonym: "dorsal oblique extraocular muscles" EXACT OMO:0003004 [] synonym: "superior oblique muscle" EXACT [ZFIN:ZDB-PUB-110512-18] xref: TAO:0000738 is_a: ZFA:0005145 ! muscle @@ -8874,7 +8873,7 @@ name: fast muscle cell somite 10 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 10." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 10" EXACT PLURAL [] +synonym: "fast muscle cells somite 10" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 10" EXACT [] xref: TAO:0000750 is_a: ZFA:0009117 ! fast muscle cell @@ -8899,7 +8898,7 @@ name: fast muscle cell somite 13 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 13." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 13" EXACT PLURAL [] +synonym: "fast muscle cells somite 13" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 13" EXACT [] xref: TAO:0000752 is_a: ZFA:0009117 ! fast muscle cell @@ -8913,7 +8912,7 @@ name: fast muscle cell somite 16 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 16." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 16" EXACT PLURAL [] +synonym: "fast muscle cells somite 16" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 16" EXACT [] xref: TAO:0000753 is_a: ZFA:0009117 ! fast muscle cell @@ -8927,7 +8926,7 @@ name: fast muscle cell somite 19 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 19." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 19" EXACT PLURAL [] +synonym: "fast muscle cells somite 19" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 19" EXACT [] xref: TAO:0000754 is_a: ZFA:0009117 ! fast muscle cell @@ -8941,7 +8940,7 @@ name: fast muscle cell somite 21 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 21." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 21" EXACT PLURAL [] +synonym: "fast muscle cells somite 21" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 21" EXACT [] xref: TAO:0000755 is_a: ZFA:0009117 ! fast muscle cell @@ -8955,7 +8954,7 @@ name: fast muscle cell somite 24 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 24." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 24" EXACT PLURAL [] +synonym: "fast muscle cells somite 24" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 24" EXACT [] xref: TAO:0000756 is_a: ZFA:0009117 ! fast muscle cell @@ -8969,7 +8968,7 @@ name: fast muscle cell somite 27 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 27." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 27" EXACT PLURAL [] +synonym: "fast muscle cells somite 27" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 27" EXACT [] xref: TAO:0000757 is_a: ZFA:0009117 ! fast muscle cell @@ -8983,7 +8982,7 @@ name: fast muscle cell somite 3 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 3." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 3" EXACT PLURAL [] +synonym: "fast muscle cells somite 3" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 3" EXACT [] xref: TAO:0000758 is_a: ZFA:0009117 ! fast muscle cell @@ -8997,7 +8996,7 @@ name: fast muscle cell somite 5 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 5." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 5" EXACT PLURAL [] +synonym: "fast muscle cells somite 5" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 5" EXACT [] xref: TAO:0000759 is_a: ZFA:0009117 ! fast muscle cell @@ -9011,7 +9010,7 @@ name: fast muscle cell somite 8 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 8." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 8" EXACT PLURAL [] +synonym: "fast muscle cells somite 8" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 8" EXACT [] xref: TAO:0000760 is_a: ZFA:0009117 ! fast muscle cell @@ -9168,7 +9167,7 @@ name: fast muscle cell somite 12 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 12." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 12" EXACT PLURAL [] +synonym: "fast muscle cells somite 12" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 12" EXACT [] xref: TAO:0000773 is_a: ZFA:0009117 ! fast muscle cell @@ -9228,7 +9227,7 @@ name: spinal cord interneuron namespace: zebrafish_anatomy def: "A CNS interneuron located in the spinal cord." [GOC:mh, ORCiD:0000-0001-9114-8737] subset: cell_slim -synonym: "interneurons spinal cord" EXACT PLURAL [] +synonym: "interneurons spinal cord" EXACT OMO:0003004 [] xref: CL:0005000 xref: TAO:0000778 is_a: ZFA:0009191 ! CNS interneuron @@ -9241,7 +9240,7 @@ id: ZFA:0000779 name: lateral forebrain bundle telencephalon namespace: zebrafish_anatomy def: "Portion of the lateral forebrain bundle that lies in the telencephalon." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "lateral forebrain bundles telencephalon" EXACT PLURAL [] +synonym: "lateral forebrain bundles telencephalon" EXACT OMO:0003004 [] xref: TAO:0000779 is_a: ZFA:0000597 ! telencephalic white matter relationship: end ZFS:0000044 ! adult @@ -9299,7 +9298,7 @@ name: fast muscle cell somite 15 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 15." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 15" EXACT PLURAL [] +synonym: "fast muscle cells somite 15" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 15" EXACT [] xref: TAO:0000784 is_a: ZFA:0009117 ! fast muscle cell @@ -9354,7 +9353,7 @@ id: ZFA:0000789 name: mesoderm pectoral fin bud namespace: zebrafish_anatomy def: "Mesoderm that is part of the pectoral fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "mesoderm pectoral fin buds" EXACT PLURAL [] +synonym: "mesoderm pectoral fin buds" EXACT OMO:0003004 [] xref: TAO:0000789 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000030 ! pharyngula:prim-15 @@ -9367,7 +9366,7 @@ name: muscle pioneer somite 10 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 10." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 10" EXACT PLURAL [] +synonym: "muscle pioneers somite 10" EXACT OMO:0003004 [] xref: TAO:0000790 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9380,7 +9379,7 @@ name: muscle pioneer somite 13 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 13." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 13" EXACT PLURAL [] +synonym: "muscle pioneers somite 13" EXACT OMO:0003004 [] xref: TAO:0000791 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9393,7 +9392,7 @@ name: muscle pioneer somite 16 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 16." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 16" EXACT PLURAL [] +synonym: "muscle pioneers somite 16" EXACT OMO:0003004 [] xref: TAO:0000792 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9406,7 +9405,7 @@ name: muscle pioneer somite 19 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 19." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 19" EXACT PLURAL [] +synonym: "muscle pioneers somite 19" EXACT OMO:0003004 [] xref: TAO:0000793 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9419,7 +9418,7 @@ name: muscle pioneer somite 22 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 22." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 22" EXACT PLURAL [] +synonym: "muscle pioneers somite 22" EXACT OMO:0003004 [] xref: TAO:0000794 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9432,7 +9431,7 @@ name: fast muscle cell somite 18 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 18." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 18" EXACT PLURAL [] +synonym: "fast muscle cells somite 18" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 18" EXACT [] xref: TAO:0000795 is_a: ZFA:0009117 ! fast muscle cell @@ -9446,7 +9445,7 @@ name: muscle pioneer somite 25 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 25." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 25" EXACT PLURAL [] +synonym: "muscle pioneers somite 25" EXACT OMO:0003004 [] xref: TAO:0000796 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9459,7 +9458,7 @@ name: muscle pioneer somite 28 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 28." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 28" EXACT PLURAL [] +synonym: "muscle pioneers somite 28" EXACT OMO:0003004 [] xref: TAO:0000797 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9472,7 +9471,7 @@ name: muscle pioneer somite 30 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 30." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 30" EXACT PLURAL [] +synonym: "muscle pioneers somite 30" EXACT OMO:0003004 [] xref: TAO:0000798 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9485,7 +9484,7 @@ name: muscle pioneer somite 6 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 6" EXACT PLURAL [] +synonym: "muscle pioneers somite 6" EXACT OMO:0003004 [] xref: TAO:0000799 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9498,7 +9497,7 @@ name: muscle pioneer somite 9 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 9." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 9" EXACT PLURAL [] +synonym: "muscle pioneers somite 9" EXACT OMO:0003004 [] xref: TAO:0000800 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9571,7 +9570,7 @@ name: fast muscle cell somite 20 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 20." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 20" EXACT PLURAL [] +synonym: "fast muscle cells somite 20" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 20" EXACT [] xref: TAO:0000806 is_a: ZFA:0009117 ! fast muscle cell @@ -9654,7 +9653,7 @@ name: infraorbital lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the infraorbital lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast infraorbital" EXACT [] -synonym: "neuromasts infraorbital" EXACT PLURAL [] +synonym: "neuromasts infraorbital" EXACT OMO:0003004 [] xref: TAO:0000813 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! adult @@ -9667,7 +9666,7 @@ name: opercular lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the opercular lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast opercular" EXACT [] -synonym: "neuromasts opercular" EXACT PLURAL [] +synonym: "neuromasts opercular" EXACT OMO:0003004 [] xref: TAO:0000814 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! adult @@ -9701,7 +9700,7 @@ name: fast muscle cell somite 23 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 23." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 23" EXACT PLURAL [] +synonym: "fast muscle cells somite 23" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 23" EXACT [] xref: TAO:0000817 is_a: ZFA:0009117 ! fast muscle cell @@ -9737,7 +9736,7 @@ id: ZFA:0000820 name: presumptive neuron neural tube namespace: zebrafish_anatomy comment: This term was obsoleted because we could not determine if it was a presumptive neuron part of the neural tube or a neuron part of the presumptive neural tube. -synonym: "presumptive neurons neural tube" EXACT PLURAL [] +synonym: "presumptive neurons neural tube" EXACT OMO:0003004 [] xref: TAO:0000820 is_obsolete: true @@ -9746,7 +9745,7 @@ id: ZFA:0000821 name: primary neuron hindbrain namespace: zebrafish_anatomy subset: cell_slim -synonym: "primary neurons hindbrain" EXACT PLURAL [] +synonym: "primary neurons hindbrain" EXACT OMO:0003004 [] xref: TAO:0000821 is_a: ZFA:0009242 ! primary neuron relationship: end ZFS:0000028 ! segmentation:26+ somites @@ -9819,7 +9818,7 @@ name: fast muscle cell somite 26 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 26." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 26" EXACT PLURAL [] +synonym: "fast muscle cells somite 26" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 26" EXACT [] xref: TAO:0000827 is_a: ZFA:0009117 ! fast muscle cell @@ -9944,7 +9943,7 @@ name: fast muscle cell somite 29 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 29." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 29" EXACT PLURAL [] +synonym: "fast muscle cells somite 29" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 29" EXACT [] xref: TAO:0000838 is_a: ZFA:0009117 ! fast muscle cell @@ -9969,7 +9968,7 @@ name: slow muscle cell somite 11 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 11." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 11" EXACT PLURAL [] +synonym: "slow muscle cells somite 11" EXACT OMO:0003004 [] xref: TAO:0000840 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9982,7 +9981,7 @@ name: slow muscle cell somite 14 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 14." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 14" EXACT PLURAL [] +synonym: "slow muscle cells somite 14" EXACT OMO:0003004 [] xref: TAO:0000841 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -9995,7 +9994,7 @@ name: slow muscle cell somite 17 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 17." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 17" EXACT PLURAL [] +synonym: "slow muscle cells somite 17" EXACT OMO:0003004 [] xref: TAO:0000842 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10008,7 +10007,7 @@ name: slow muscle cell somite 2 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 2." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 2" EXACT PLURAL [] +synonym: "slow muscle cells somite 2" EXACT OMO:0003004 [] xref: TAO:0000843 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10021,7 +10020,7 @@ name: slow muscle cell somite 22 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 22." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 22" EXACT PLURAL [] +synonym: "slow muscle cells somite 22" EXACT OMO:0003004 [] xref: TAO:0000844 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10034,7 +10033,7 @@ name: slow muscle cell somite 25 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 25." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 25" EXACT PLURAL [] +synonym: "slow muscle cells somite 25" EXACT OMO:0003004 [] xref: TAO:0000845 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10047,7 +10046,7 @@ name: slow muscle cell somite 28 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 28." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 28" EXACT PLURAL [] +synonym: "slow muscle cells somite 28" EXACT OMO:0003004 [] xref: TAO:0000846 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10060,7 +10059,7 @@ name: slow muscle cell somite 30 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 30." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 30" EXACT PLURAL [] +synonym: "slow muscle cells somite 30" EXACT OMO:0003004 [] xref: TAO:0000847 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10073,7 +10072,7 @@ name: slow muscle cell somite 6 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 6." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 6" EXACT PLURAL [] +synonym: "slow muscle cells somite 6" EXACT OMO:0003004 [] xref: TAO:0000848 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10086,7 +10085,7 @@ name: fast muscle cell somite 4 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 4." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 4" EXACT PLURAL [] +synonym: "fast muscle cells somite 4" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 4" EXACT [] xref: TAO:0000849 is_a: ZFA:0009117 ! fast muscle cell @@ -10100,7 +10099,7 @@ name: slow muscle cell somite 9 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 9." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 9" EXACT PLURAL [] +synonym: "slow muscle cells somite 9" EXACT OMO:0003004 [] xref: TAO:0000850 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10195,7 +10194,7 @@ def: "Modified hemal arches and spines that support the caudal fin. In developi synonym: "ha(pu)" EXACT [] synonym: "hemal arch (preural)" EXACT [ZFIN:ZDB-PUB-011008-1] synonym: "specialized haemal arch and spine" EXACT [] -synonym: "specialized hemal arches and spines" EXACT PLURAL [] +synonym: "specialized hemal arches and spines" EXACT OMO:0003004 [] xref: TAO:0000859 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! adult @@ -10208,7 +10207,7 @@ name: fast muscle cell somite 7 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 7." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 7" EXACT PLURAL [] +synonym: "fast muscle cells somite 7" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 7" EXACT [] xref: TAO:0000860 is_a: ZFA:0009117 ! fast muscle cell @@ -10223,7 +10222,7 @@ namespace: zebrafish_anatomy def: "Extraocular muscle that inserts at the scleral-corneal junction on the ventral side of the eye. The insertion point of the ventral oblique and the ventral rectus overlap in adult fish. All the oblique extraocular muscles originate together from the anterior ethmoid plate. The ventral oblique is innervated by the oculomotor nerve." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-111205-9] comment: Mature form at Hatching:Pec-fin. synonym: "inferior oblique muscle" EXACT [ZFIN:ZDB-PUB-110512-18] -synonym: "ventral oblique extraocular muscles" EXACT PLURAL [] +synonym: "ventral oblique extraocular muscles" EXACT OMO:0003004 [] xref: TAO:0000861 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! adult @@ -10391,7 +10390,7 @@ name: fast muscle cell somite 11 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 11." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 11" EXACT PLURAL [] +synonym: "fast muscle cells somite 11" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 11" EXACT [] xref: TAO:0000876 is_a: ZFA:0009117 ! fast muscle cell @@ -10405,7 +10404,7 @@ name: fast muscle cell somite 14 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 14." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 14" EXACT PLURAL [] +synonym: "fast muscle cells somite 14" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 14" EXACT [] xref: TAO:0000877 is_a: ZFA:0009117 ! fast muscle cell @@ -10419,7 +10418,7 @@ name: fast muscle cell somite 17 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 17." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 17" EXACT PLURAL [] +synonym: "fast muscle cells somite 17" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 17" EXACT [] xref: TAO:0000878 is_a: ZFA:0009117 ! fast muscle cell @@ -10433,7 +10432,7 @@ name: fast muscle cell somite 2 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 2." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 2" EXACT PLURAL [] +synonym: "fast muscle cells somite 2" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 2" EXACT [] xref: TAO:0000879 is_a: ZFA:0009117 ! fast muscle cell @@ -10447,7 +10446,7 @@ name: fast muscle cell somite 22 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 22." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 22" EXACT PLURAL [] +synonym: "fast muscle cells somite 22" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 22" EXACT [] xref: TAO:0000880 is_a: ZFA:0009117 ! fast muscle cell @@ -10461,7 +10460,7 @@ name: fast muscle cell somite 25 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 25." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 25" EXACT PLURAL [] +synonym: "fast muscle cells somite 25" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 25" EXACT [] xref: TAO:0000881 is_a: ZFA:0009117 ! fast muscle cell @@ -10488,7 +10487,7 @@ name: fast muscle cell somite 28 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 28." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 28" EXACT PLURAL [] +synonym: "fast muscle cells somite 28" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 28" EXACT [] xref: TAO:0000883 is_a: ZFA:0009117 ! fast muscle cell @@ -10502,7 +10501,7 @@ name: fast muscle cell somite 30 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 30." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 30" EXACT PLURAL [] +synonym: "fast muscle cells somite 30" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 30" EXACT [] xref: TAO:0000884 is_a: ZFA:0009117 ! fast muscle cell @@ -10516,7 +10515,7 @@ name: fast muscle cell somite 6 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 6." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 6" EXACT PLURAL [] +synonym: "fast muscle cells somite 6" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 6" EXACT [] xref: TAO:0000885 is_a: ZFA:0009117 ! fast muscle cell @@ -10530,7 +10529,7 @@ name: fast muscle cell somite 9 namespace: zebrafish_anatomy def: "Fast muscle cell located in somite 9." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "fast muscle cells somite 9" EXACT PLURAL [] +synonym: "fast muscle cells somite 9" EXACT OMO:0003004 [] synonym: "fast muscle fiber somite 9" EXACT [] xref: TAO:0000886 is_a: ZFA:0009117 ! fast muscle cell @@ -10722,7 +10721,7 @@ id: ZFA:0000902 name: hypural muscle namespace: zebrafish_anatomy def: "Musculature associated with the hypurals." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "hypural muscles" EXACT PLURAL [] +synonym: "hypural muscles" EXACT OMO:0003004 [] xref: TAO:0000902 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000044 ! adult @@ -10812,7 +10811,7 @@ relationship: start ZFS:0000025 ! segmentation:10-13 somites id: ZFA:0000910 name: medial forebrain bundle telencephalon namespace: zebrafish_anatomy -synonym: "medial forebrain bundles telencephalon" EXACT PLURAL [] +synonym: "medial forebrain bundles telencephalon" EXACT OMO:0003004 [] xref: TAO:0000910 is_a: ZFA:0000597 ! telencephalic white matter relationship: end ZFS:0000044 ! adult @@ -10867,7 +10866,7 @@ name: muscle pioneer somite 11 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 11." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 11" EXACT PLURAL [] +synonym: "muscle pioneers somite 11" EXACT OMO:0003004 [] xref: TAO:0000915 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10880,7 +10879,7 @@ name: muscle pioneer somite 14 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 14." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 14" EXACT PLURAL [] +synonym: "muscle pioneers somite 14" EXACT OMO:0003004 [] xref: TAO:0000916 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10893,7 +10892,7 @@ name: muscle pioneer somite 17 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 17." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 17" EXACT PLURAL [] +synonym: "muscle pioneers somite 17" EXACT OMO:0003004 [] xref: TAO:0000917 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10906,7 +10905,7 @@ name: muscle pioneer somite 20 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 20." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 20" EXACT PLURAL [] +synonym: "muscle pioneers somite 20" EXACT OMO:0003004 [] xref: TAO:0000918 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10919,7 +10918,7 @@ name: muscle pioneer somite 23 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 23." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 23" EXACT PLURAL [] +synonym: "muscle pioneers somite 23" EXACT OMO:0003004 [] xref: TAO:0000919 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10932,7 +10931,7 @@ name: muscle pioneer somite 26 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 26." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 26" EXACT PLURAL [] +synonym: "muscle pioneers somite 26" EXACT OMO:0003004 [] xref: TAO:0000920 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10945,7 +10944,7 @@ name: muscle pioneer somite 29 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 29." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 29" EXACT PLURAL [] +synonym: "muscle pioneers somite 29" EXACT OMO:0003004 [] xref: TAO:0000921 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10958,7 +10957,7 @@ name: muscle pioneer somite 4 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 4" EXACT PLURAL [] +synonym: "muscle pioneers somite 4" EXACT OMO:0003004 [] xref: TAO:0000922 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -10971,7 +10970,7 @@ name: muscle pioneer somite 7 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 7" EXACT PLURAL [] +synonym: "muscle pioneers somite 7" EXACT OMO:0003004 [] xref: TAO:0000923 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11115,7 +11114,7 @@ id: ZFA:0000936 name: dorsal fin distal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "dorsal fin distal radials" EXACT PLURAL [] +synonym: "dorsal fin distal radials" EXACT OMO:0003004 [] xref: TAO:0000936 is_a: ZFA:0001647 ! dorsal fin radial relationship: end ZFS:0000044 ! adult @@ -11153,7 +11152,7 @@ name: middle lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the middle lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast middle" EXACT [] -synonym: "neuromasts middle" EXACT PLURAL [] +synonym: "neuromasts middle" EXACT OMO:0003004 [] xref: TAO:0000939 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! adult @@ -11166,7 +11165,7 @@ name: posterior lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the posterior lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast posterior" EXACT [] -synonym: "neuromasts posterior" EXACT PLURAL [] +synonym: "neuromasts posterior" EXACT OMO:0003004 [] xref: TAO:0000940 is_a: ZFA:0000243 ! neuromast relationship: develops_from ZFA:0001157 ! posterior lateral line primordium @@ -11228,7 +11227,7 @@ id: ZFA:0000947 name: dorsal fin proximal radial namespace: zebrafish_anatomy def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "dorsal fin proximal radials" EXACT PLURAL [] +synonym: "dorsal fin proximal radials" EXACT OMO:0003004 [] xref: TAO:0000947 is_a: ZFA:0001647 ! dorsal fin radial relationship: end ZFS:0000044 ! adult @@ -11410,7 +11409,7 @@ name: slow muscle cell somite 1 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 1." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961219-12] subset: cell_slim -synonym: "slow muscle cells somite 1" EXACT PLURAL [] +synonym: "slow muscle cells somite 1" EXACT OMO:0003004 [] xref: TAO:0000963 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11423,7 +11422,7 @@ name: slow muscle cell somite 12 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 12." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 12" EXACT PLURAL [] +synonym: "slow muscle cells somite 12" EXACT OMO:0003004 [] xref: TAO:0000964 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11436,7 +11435,7 @@ name: slow muscle cell somite 15 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 15." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 15" EXACT PLURAL [] +synonym: "slow muscle cells somite 15" EXACT OMO:0003004 [] xref: TAO:0000965 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11449,7 +11448,7 @@ name: slow muscle cell somite 18 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 18." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 18" EXACT PLURAL [] +synonym: "slow muscle cells somite 18" EXACT OMO:0003004 [] xref: TAO:0000966 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11462,7 +11461,7 @@ name: slow muscle cell somite 20 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 20." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 20" EXACT PLURAL [] +synonym: "slow muscle cells somite 20" EXACT OMO:0003004 [] xref: TAO:0000967 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11486,7 +11485,7 @@ name: slow muscle cell somite 23 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 23." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 23" EXACT PLURAL [] +synonym: "slow muscle cells somite 23" EXACT OMO:0003004 [] xref: TAO:0000969 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11499,7 +11498,7 @@ name: slow muscle cell somite 26 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 26." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 26" EXACT PLURAL [] +synonym: "slow muscle cells somite 26" EXACT OMO:0003004 [] xref: TAO:0000970 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11512,7 +11511,7 @@ name: slow muscle cell somite 29 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 29." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 29" EXACT PLURAL [] +synonym: "slow muscle cells somite 29" EXACT OMO:0003004 [] xref: TAO:0000971 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11525,7 +11524,7 @@ name: slow muscle cell somite 4 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 4." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 4" EXACT PLURAL [] +synonym: "slow muscle cells somite 4" EXACT OMO:0003004 [] xref: TAO:0000972 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11538,7 +11537,7 @@ name: slow muscle cell somite 7 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 7." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 7" EXACT PLURAL [] +synonym: "slow muscle cells somite 7" EXACT OMO:0003004 [] xref: TAO:0000973 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11789,7 +11788,7 @@ id: ZFA:0000997 name: medial funicular nucleus trigeminal nucleus namespace: zebrafish_anatomy def: "Sensory trigeminal nucleus located at the end of the medulla oblongata." [ZFIN:ZDB-PUB-961014-1280] -synonym: "medial funicular nucleus trigeminal nuclei" EXACT PLURAL [] +synonym: "medial funicular nucleus trigeminal nuclei" EXACT OMO:0003004 [] xref: TAO:0000997 is_a: ZFA:0000433 ! sensory trigeminal nucleus relationship: end ZFS:0000044 ! adult @@ -11818,7 +11817,7 @@ id: ZFA:0001000 name: mesenchyme pectoral fin namespace: zebrafish_anatomy def: "Mesenchyme that is part of the pectoral fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "mesenchyme pectoral fins" EXACT PLURAL [] +synonym: "mesenchyme pectoral fins" EXACT OMO:0003004 [] xref: TAO:0001000 is_a: ZFA:0000393 ! mesenchyme relationship: develops_from ZFA:0000789 ! mesoderm pectoral fin bud @@ -11851,7 +11850,7 @@ name: muscle pioneer somite 12 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 12." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 12" EXACT PLURAL [] +synonym: "muscle pioneers somite 12" EXACT OMO:0003004 [] xref: TAO:0001003 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11864,7 +11863,7 @@ name: muscle pioneer somite 15 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 15." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 15" EXACT PLURAL [] +synonym: "muscle pioneers somite 15" EXACT OMO:0003004 [] xref: TAO:0001004 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11877,7 +11876,7 @@ name: muscle pioneer somite 18 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 18." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 18" EXACT PLURAL [] +synonym: "muscle pioneers somite 18" EXACT OMO:0003004 [] xref: TAO:0001005 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11890,7 +11889,7 @@ name: muscle pioneer somite 21 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 21." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 21" EXACT PLURAL [] +synonym: "muscle pioneers somite 21" EXACT OMO:0003004 [] xref: TAO:0001006 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11903,7 +11902,7 @@ name: muscle pioneer somite 24 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 24." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 24" EXACT PLURAL [] +synonym: "muscle pioneers somite 24" EXACT OMO:0003004 [] xref: TAO:0001007 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11916,7 +11915,7 @@ name: muscle pioneer somite 27 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 27." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 27" EXACT PLURAL [] +synonym: "muscle pioneers somite 27" EXACT OMO:0003004 [] xref: TAO:0001008 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11929,7 +11928,7 @@ name: muscle pioneer somite 3 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 3." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 3" EXACT PLURAL [] +synonym: "muscle pioneers somite 3" EXACT OMO:0003004 [] xref: TAO:0001009 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11942,7 +11941,7 @@ name: muscle pioneer somite 5 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 5." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 5" EXACT PLURAL [] +synonym: "muscle pioneers somite 5" EXACT OMO:0003004 [] xref: TAO:0001010 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -11955,7 +11954,7 @@ name: muscle pioneer somite 8 namespace: zebrafish_anatomy def: "Muscle pioneer cell part of somite 8." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "muscle pioneers somite 8" EXACT PLURAL [] +synonym: "muscle pioneers somite 8" EXACT OMO:0003004 [] xref: TAO:0001011 is_a: ZFA:0001086 ! muscle pioneer relationship: end ZFS:0000034 ! hatching:pec-fin @@ -12110,7 +12109,7 @@ name: occipital lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the occipital lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast occipital" EXACT [] -synonym: "neuromasts occipital" EXACT PLURAL [] +synonym: "neuromasts occipital" EXACT OMO:0003004 [] xref: TAO:0001025 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! adult @@ -12123,7 +12122,7 @@ name: supraorbital lateral line neuromast namespace: zebrafish_anatomy def: "Neuromast that is part of the supraorbital lateral line. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-576] synonym: "neuromast supraorbital" EXACT [] -synonym: "neuromasts supraorbital" EXACT PLURAL [] +synonym: "neuromasts supraorbital" EXACT OMO:0003004 [] xref: TAO:0001026 is_a: ZFA:0000243 ! neuromast relationship: end ZFS:0000044 ! adult @@ -12148,7 +12147,7 @@ id: ZFA:0001028 name: hypurapophysis namespace: zebrafish_anatomy def: "The paired bony lateral extensions off the parhypural." [ZFIN:ZDB-PUB-011008-1] -synonym: "hypurapophyses" EXACT PLURAL [] +synonym: "hypurapophyses" EXACT OMO:0003004 [] synonym: "parhypurapophysis" EXACT [] synonym: "parhypurapophysis process" EXACT [] xref: TAO:0001028 @@ -12163,7 +12162,7 @@ name: inner limiting membrane namespace: zebrafish_anatomy def: "Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3] synonym: "ILM" EXACT [] -synonym: "inner limiting membranes" EXACT PLURAL [] +synonym: "inner limiting membranes" EXACT OMO:0003004 [] xref: TAO:0001029 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! adult @@ -12368,7 +12367,7 @@ name: slow muscle cell somite 10 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 10." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 10" EXACT PLURAL [] +synonym: "slow muscle cells somite 10" EXACT OMO:0003004 [] xref: TAO:0001047 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -12381,7 +12380,7 @@ name: slow muscle cell somite 13 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 13." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 13" EXACT PLURAL [] +synonym: "slow muscle cells somite 13" EXACT OMO:0003004 [] xref: TAO:0001048 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -12394,7 +12393,7 @@ name: slow muscle cell somite 16 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 16." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 16" EXACT PLURAL [] +synonym: "slow muscle cells somite 16" EXACT OMO:0003004 [] xref: TAO:0001049 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -12407,7 +12406,7 @@ name: slow muscle cell somite 19 namespace: zebrafish_anatomy def: "A muscle cell that is small, darkly colored, with high lipid and mitochondrial content. Slow muscle cells are located superficial to the fast muscle cell in the myotome of somite 19." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "slow muscle cells somite 19" EXACT PLURAL [] +synonym: "slow muscle cells somite 19" EXACT OMO:0003004 [] xref: TAO:0001050 is_a: ZFA:0009116 ! slow muscle cell relationship: end ZFS:0000034 ! hatching:pec-fin @@ -12468,7 +12467,7 @@ id: ZFA:0001055 name: pronephric duct opening namespace: zebrafish_anatomy def: "The juncture where the pronephric ducts empty into the cloaca." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "pronephric duct openings" EXACT PLURAL [] +synonym: "pronephric duct openings" EXACT OMO:0003004 [] synonym: "urogenital opening" RELATED [ZFIN:ZDB-PUB-060508-11] xref: TAO:0001055 is_a: ZFA:0001643 ! anatomical space @@ -12547,7 +12546,7 @@ id: ZFA:0001061 name: intersegmental artery namespace: zebrafish_anatomy def: "Arteries that connect the dorsal aorta and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers. They form from the primary sprouts from the dorsal aorta." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4] -synonym: "intersegmental arteries" EXACT PLURAL [] +synonym: "intersegmental arteries" EXACT OMO:0003004 [] xref: TAO:0001061 is_a: ZFA:0000005 ! artery is_a: ZFA:0001285 ! intersegmental vessel @@ -12582,7 +12581,7 @@ namespace: zebrafish_anatomy def: "A segment of the developing hindbrain." [ZFIN:ZDB-PUB-961014-576] synonym: "hindbrain segment" EXACT [] synonym: "neuromere" RELATED [] -synonym: "rhombomeres" EXACT PLURAL [] +synonym: "rhombomeres" EXACT OMO:0003004 [] xref: TAO:0001064 is_a: ZFA:0001328 ! neuromere relationship: end ZFS:0000000 ! unknown @@ -12668,7 +12667,7 @@ name: presumptive neural retina namespace: zebrafish_anatomy def: "Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "inner layer optic cup" EXACT [] -synonym: "presumptive retinas" EXACT PLURAL [] +synonym: "presumptive retinas" EXACT OMO:0003004 [] xref: TAO:0001071 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000029 ! pharyngula:prim-5 @@ -12680,7 +12679,7 @@ id: ZFA:0001072 name: thyroid follicle namespace: zebrafish_anatomy def: "Portion of tissue formed form thyroid follicle cells that forms along the midline in pharyngeal mesenchyme. The follicles are not encapsulated by connective tissue." [ZFIN:ZDB-PUB-060517-11] -synonym: "thyroid follicles" EXACT PLURAL [] +synonym: "thyroid follicles" EXACT OMO:0003004 [] xref: TAO:0001072 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001081 ! thyroid primordium @@ -12704,7 +12703,7 @@ name: taste bud namespace: zebrafish_anatomy def: "Pear or onion-shaped intraepithelial sensory endorgans. They sit on a small dermal papilla and consist of modified epithelial cells of different types. The taste buds are located in the mouth, in the oropharyngeal cavity, on the head and on the barbels. They are innervated by either the facial (VII), the glossopharyngeal (IX), or the vagal (X) cranial nerve." [ZFIN:ZDB-PUB-020403-3] comment: Taste buds are made up of vertically oriented, elongate cells form the sensory epithelium of the organ: dark cells with many small microvilli, and light cells with one large microvillus as an apical ending. Between the dark and light cells and the basal lamina, the basal cells stretch horizontally. -synonym: "taste buds" EXACT PLURAL [] +synonym: "taste buds" EXACT OMO:0003004 [] xref: TAO:0001074 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -12716,7 +12715,7 @@ id: ZFA:0001075 name: choroidal fissure namespace: zebrafish_anatomy def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "choroidal fissures" EXACT PLURAL [] +synonym: "choroidal fissures" EXACT OMO:0003004 [] xref: TAO:0001075 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! adult @@ -12781,7 +12780,7 @@ id: ZFA:0001080 name: sclerotome namespace: zebrafish_anatomy def: "Portion of somite that gives rise to skeletal elements." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "sclerotomes" EXACT PLURAL [] +synonym: "sclerotomes" EXACT OMO:0003004 [] xref: TAO:0001080 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0000155 ! somite @@ -12793,7 +12792,7 @@ id: ZFA:0001081 name: thyroid primordium namespace: zebrafish_anatomy def: "Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] -synonym: "thyroid primordia" EXACT PLURAL [] +synonym: "thyroid primordia" EXACT OMO:0003004 [] xref: TAO:0001081 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001104 ! pharyngeal endoderm @@ -12817,7 +12816,7 @@ id: ZFA:0001083 name: ventricular zone namespace: zebrafish_anatomy def: "Proliferative region that is part of the ventricular system. The cells directly face the ventricle." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "ventricular zones" EXACT PLURAL [] +synonym: "ventricular zones" EXACT OMO:0003004 [] xref: TAO:0001083 is_a: ZFA:0000098 ! proliferative region relationship: end ZFS:0000044 ! adult @@ -12828,7 +12827,7 @@ relationship: start ZFS:0000029 ! pharyngula:prim-5 id: ZFA:0001084 name: epaxial myotome region namespace: zebrafish_anatomy -synonym: "epaxial myotome regions" EXACT PLURAL [] +synonym: "epaxial myotome regions" EXACT OMO:0003004 [] xref: TAO:0001084 is_a: ZFA:0005145 ! muscle relationship: end ZFS:0000034 ! hatching:pec-fin @@ -12852,7 +12851,7 @@ name: muscle pioneer namespace: zebrafish_anatomy def: "Cells that develop from adaxial cells that express engrailed and do not migrate completely to the lateral surface of the myotome, and instead extend from the notochord to the lateral surface of the somite, at the level of the future horizontal myoseptum." [ZFIN:ZDB-PUB-961219-12] subset: cell_slim -synonym: "muscle pioneers" EXACT PLURAL [] +synonym: "muscle pioneers" EXACT OMO:0003004 [] synonym: "non migratory adaxial cells" EXACT [] xref: TAO:0001086 is_a: ZFA:0009114 ! muscle cell @@ -12866,7 +12865,7 @@ id: ZFA:0001089 name: myoseptum namespace: zebrafish_anatomy synonym: "myocommata" EXACT [ZFIN:ZDB-PUB-151106-17] -synonym: "myosepta" EXACT PLURAL [] +synonym: "myosepta" EXACT OMO:0003004 [] xref: TAO:0001089 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! adult @@ -12900,9 +12899,9 @@ id: ZFA:0001095 name: immature macula namespace: zebrafish_anatomy def: "Is an otic sensory epithelium that will develop into the mature macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "immature maculae" EXACT PLURAL [] +synonym: "immature maculae" EXACT OMO:0003004 [] synonym: "immature sensory patch" EXACT [] -synonym: "immature sensory patches" EXACT PLURAL [] +synonym: "immature sensory patches" EXACT OMO:0003004 [] xref: TAO:0001095 is_a: ZFA:0007070 ! otic sensory epithelium relationship: end ZFS:0000036 ! larval:day 4 @@ -12914,7 +12913,7 @@ id: ZFA:0001096 name: immature anterior macula namespace: zebrafish_anatomy def: "Is an otic sensory epithelium that will develop into the mature anterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "immature anterior maculae" EXACT PLURAL [] +synonym: "immature anterior maculae" EXACT OMO:0003004 [] xref: TAO:0001096 is_a: ZFA:0007070 ! otic sensory epithelium relationship: end ZFS:0000036 ! larval:day 4 @@ -12926,7 +12925,7 @@ id: ZFA:0001097 name: immature posterior macula namespace: zebrafish_anatomy def: "Is an otic sensory epithelium that will develop into the mature posterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "immature posterior maculae" EXACT PLURAL [] +synonym: "immature posterior maculae" EXACT OMO:0003004 [] xref: TAO:0001097 is_a: ZFA:0007070 ! otic sensory epithelium relationship: end ZFS:0000036 ! larval:day 4 @@ -12939,7 +12938,7 @@ name: immature hair cell anterior macula namespace: zebrafish_anatomy def: "A hair cell which is immature and located in the anterior macula. It will develop into a hair cell of the anterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "immature sensory hair cells anterior macula" EXACT PLURAL [] +synonym: "immature sensory hair cells anterior macula" EXACT OMO:0003004 [] xref: TAO:0001098 is_a: ZFA:0009366 ! hair cell relationship: end ZFS:0000036 ! larval:day 4 @@ -12952,7 +12951,7 @@ name: immature hair cell posterior macula namespace: zebrafish_anatomy def: "A hair cell which is immature and located in the posterior macula. It will develop into a hair cell of the posterior macula." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "immature sensory hair cells posterior macula" EXACT PLURAL [] +synonym: "immature sensory hair cells posterior macula" EXACT OMO:0003004 [] xref: TAO:0001099 is_a: ZFA:0009366 ! hair cell relationship: end ZFS:0000036 ! larval:day 4 @@ -12996,7 +12995,7 @@ id: ZFA:0001105 name: embryonic structure namespace: zebrafish_anatomy def: "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "embryonic structures" EXACT PLURAL [] +synonym: "embryonic structures" EXACT OMO:0003004 [] xref: TAO:0001105 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000038 ! larval:day 6 @@ -13008,7 +13007,7 @@ id: ZFA:0001106 name: pharyngeal pouch namespace: zebrafish_anatomy def: "Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits." [ZFIN:ZDB-PUB-041029-8] -synonym: "pharyngeal pouches" EXACT PLURAL [] +synonym: "pharyngeal pouches" EXACT OMO:0003004 [] xref: TAO:0001106 is_a: ZFA:0001488 ! multi-tissue structure relationship: develops_from ZFA:0001104 ! pharyngeal endoderm @@ -13022,7 +13021,7 @@ id: ZFA:0001107 name: internal gill bud namespace: zebrafish_anatomy def: "Portion of tissue that develops into a gill." [ZFIN:ZDB-PUB-041216-7] -synonym: "internal gill buds" EXACT PLURAL [] +synonym: "internal gill buds" EXACT OMO:0003004 [] xref: TAO:0001107 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0001106 ! pharyngeal pouch @@ -13088,7 +13087,7 @@ id: ZFA:0001112 name: granulosa cell layer namespace: zebrafish_anatomy def: "Portion of tissue part of the ovarian follicle containing a single layer of granulosa cells that surround the developing oocyte." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "granulosa cell layers" EXACT PLURAL [] +synonym: "granulosa cell layers" EXACT OMO:0003004 [] xref: TAO:0001112 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -13100,7 +13099,7 @@ id: ZFA:0001113 name: thecal cell layer namespace: zebrafish_anatomy def: "Multi-tissue structure of the ovarian follicle, composed of stromal cells and capillaries that covers oocytes. The thecal layer is external to the granulosa cell layer." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "thecal cell layers" EXACT PLURAL [] +synonym: "thecal cell layers" EXACT OMO:0003004 [] xref: TAO:0001113 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -13133,7 +13132,7 @@ id: ZFA:0001116 name: presumptive structure namespace: zebrafish_anatomy def: "Portion of embryonic tissue determined by fate mapping to become a structure." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] -synonym: "presumptive structures" EXACT PLURAL [] +synonym: "presumptive structures" EXACT OMO:0003004 [] xref: TAO:0001116 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000032 ! pharyngula:high-pec @@ -13160,7 +13159,7 @@ synonym: "anal papilla" EXACT [] synonym: "anal papillae" EXACT [] synonym: "genital papilla" EXACT [] synonym: "UGP" EXACT [] -synonym: "urogenital papillae" EXACT PLURAL [] +synonym: "urogenital papillae" EXACT OMO:0003004 [] xref: TAO:0001118 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! adult @@ -13254,7 +13253,7 @@ name: noninvoluting endocytic marginal cell cluster namespace: zebrafish_anatomy def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution." [ZFIN:ZDB-PUB-970107-2] synonym: "NEM" EXACT [] -synonym: "noninvoluting endocytic marginal cells" EXACT PLURAL [] +synonym: "noninvoluting endocytic marginal cells" EXACT OMO:0003004 [] xref: TAO:0001126 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000017 ! gastrula:50%-epiboly @@ -13275,7 +13274,7 @@ relationship: start ZFS:0000024 ! segmentation:5-9 somites id: ZFA:0001128 name: pharyngeal pouch 1 namespace: zebrafish_anatomy -synonym: "pharyngeal pouches 1" EXACT PLURAL [] +synonym: "pharyngeal pouches 1" EXACT OMO:0003004 [] xref: TAO:0001128 is_a: ZFA:0001106 ! pharyngeal pouch relationship: end ZFS:0000034 ! hatching:pec-fin @@ -13294,7 +13293,7 @@ relationship: start ZFS:0000027 ! segmentation:20-25 somites id: ZFA:0001130 name: pharyngeal pouch 2 namespace: zebrafish_anatomy -synonym: "pharyngeal pouches 2" EXACT PLURAL [] +synonym: "pharyngeal pouches 2" EXACT OMO:0003004 [] xref: TAO:0001130 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! unknown @@ -13304,7 +13303,7 @@ relationship: start ZFS:0000027 ! segmentation:20-25 somites id: ZFA:0001131 name: pharyngeal pouch 3 namespace: zebrafish_anatomy -synonym: "pharyngeal pouches 3" EXACT PLURAL [] +synonym: "pharyngeal pouches 3" EXACT OMO:0003004 [] xref: TAO:0001131 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! unknown @@ -13314,7 +13313,7 @@ relationship: start ZFS:0000028 ! segmentation:26+ somites id: ZFA:0001132 name: pharyngeal pouch 6 namespace: zebrafish_anatomy -synonym: "pharyngeal pouches 6" EXACT PLURAL [] +synonym: "pharyngeal pouches 6" EXACT OMO:0003004 [] xref: TAO:0001132 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! unknown @@ -13324,7 +13323,7 @@ relationship: start ZFS:0000028 ! segmentation:26+ somites id: ZFA:0001133 name: pharyngeal pouch 5 namespace: zebrafish_anatomy -synonym: "pharyngeal pouches 5" EXACT PLURAL [] +synonym: "pharyngeal pouches 5" EXACT OMO:0003004 [] xref: TAO:0001133 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! unknown @@ -13334,7 +13333,7 @@ relationship: start ZFS:0000028 ! segmentation:26+ somites id: ZFA:0001134 name: pharyngeal pouch 4 namespace: zebrafish_anatomy -synonym: "pharyngeal pouches 4" EXACT PLURAL [] +synonym: "pharyngeal pouches 4" EXACT OMO:0003004 [] xref: TAO:0001134 is_a: ZFA:0001129 ! pharyngeal pouches 2-6 relationship: end ZFS:0000000 ! unknown @@ -13369,7 +13368,7 @@ id: ZFA:0001137 name: ventral tooth row namespace: zebrafish_anatomy def: "Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "ventral tooth rows" EXACT PLURAL [] +synonym: "ventral tooth rows" EXACT OMO:0003004 [] xref: TAO:0001137 is_a: ZFA:0001642 ! tooth row relationship: end ZFS:0000044 ! adult @@ -13390,7 +13389,7 @@ id: ZFA:0001139 name: mediodorsal tooth row namespace: zebrafish_anatomy def: "Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "mediodorsal tooth rows" EXACT PLURAL [] +synonym: "mediodorsal tooth rows" EXACT OMO:0003004 [] xref: TAO:0001139 is_a: ZFA:0001642 ! tooth row relationship: end ZFS:0000044 ! adult @@ -13401,7 +13400,7 @@ id: ZFA:0001140 name: dorsal tooth row namespace: zebrafish_anatomy def: "Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "dorsal tooth rows" EXACT PLURAL [] +synonym: "dorsal tooth rows" EXACT OMO:0003004 [] xref: TAO:0001140 is_a: ZFA:0001642 ! tooth row relationship: end ZFS:0000044 ! adult @@ -13579,7 +13578,7 @@ id: ZFA:0001156 name: posterior lateral line placode namespace: zebrafish_anatomy def: "Dorsolateral placode that gives rise to the posterior lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "posterior lateral line placodes" EXACT PLURAL [] +synonym: "posterior lateral line placodes" EXACT OMO:0003004 [] xref: TAO:0001156 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000028 ! segmentation:26+ somites @@ -13591,7 +13590,7 @@ id: ZFA:0001157 name: posterior lateral line primordium namespace: zebrafish_anatomy def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail." [ZFIN:ZDB-PUB-010705-16] -synonym: "posterior lateral line primordia" EXACT PLURAL [] +synonym: "posterior lateral line primordia" EXACT OMO:0003004 [] xref: TAO:0001157 is_a: ZFA:0000228 ! lateral line primordium relationship: develops_from ZFA:0001156 ! posterior lateral line placode @@ -13632,7 +13631,7 @@ name: pectoral fin namespace: zebrafish_anatomy def: "Paired fin that is located in the thoracic region of the body." [TAO:curator] synonym: "forefin" EXACT [] -synonym: "pectoral fins" EXACT PLURAL [] +synonym: "pectoral fins" EXACT OMO:0003004 [] xref: TAO:0001161 is_a: ZFA:0005596 ! paired fin relationship: develops_from ZFA:0000141 ! pectoral fin bud @@ -13892,7 +13891,7 @@ id: ZFA:0001184 name: pelvic fin namespace: zebrafish_anatomy def: "Paired fin located in the abdominal position of the body." [TAO:curator] -synonym: "pelvic fins" EXACT PLURAL [] +synonym: "pelvic fins" EXACT OMO:0003004 [] xref: TAO:0001184 is_a: ZFA:0005596 ! paired fin relationship: develops_from ZFA:0001384 ! pelvic fin bud @@ -13952,7 +13951,7 @@ id: ZFA:0001189 name: vertebra namespace: zebrafish_anatomy def: "All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988). Adult zebrafish usually 32 vertebrae but may have as few as 30 to as many as 33 vertebrae." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-020807-1] -synonym: "vertebrae" EXACT PLURAL [] +synonym: "vertebrae" EXACT OMO:0003004 [] xref: TAO:0001189 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! adult @@ -13964,7 +13963,7 @@ id: ZFA:0001190 name: Weberian vertebra namespace: zebrafish_anatomy def: "The first four vertebrae, which are part of the Weberian apparatus." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "Weberian vertebrae" EXACT PLURAL [] +synonym: "Weberian vertebrae" EXACT OMO:0003004 [] xref: TAO:0001190 is_a: ZFA:0000263 ! precaudal vertebra relationship: end ZFS:0000044 ! adult @@ -14249,7 +14248,7 @@ id: ZFA:0001215 name: thalamus namespace: zebrafish_anatomy def: "Multi-tissue structure that is paired, and is situated one on either side of and forming part of the lateral wall of the third ventricle." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "thalami" EXACT PLURAL [] +synonym: "thalami" EXACT OMO:0003004 [] xref: TAO:0001215 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -14296,7 +14295,7 @@ id: ZFA:0001220 name: copula namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. The copulae are the precursors of the basibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "copulae" EXACT PLURAL [] +synonym: "copulae" EXACT OMO:0003004 [] xref: TAO:0001220 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! adult @@ -14376,7 +14375,7 @@ namespace: zebrafish_anatomy def: "Skeletal and cartilaginous elements of the first pharyngeal arch." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "jaw" EXACT [] synonym: "jaw cartilage" EXACT [] -synonym: "jaws" EXACT PLURAL [] +synonym: "jaws" EXACT OMO:0003004 [] synonym: "oral jaw skeleton" EXACT [] synonym: "pharyngeal arch 1 skeleton" EXACT [] xref: TAO:0001227 @@ -14466,7 +14465,7 @@ id: ZFA:0001233 name: hypobranchial 1 bone namespace: zebrafish_anatomy def: "Ossification that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 15mm." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917] -synonym: "hypobranchial 1 bones" EXACT PLURAL [] +synonym: "hypobranchial 1 bones" EXACT OMO:0003004 [] xref: TAO:0001233 is_a: ZFA:0000363 ! hypobranchial bone relationship: develops_from ZFA:0001524 ! hypobranchial 1 cartilage @@ -14480,7 +14479,7 @@ name: hypobranchial 4 bone namespace: zebrafish_anatomy def: "Tiny hypobranchial4 cartilages appear at anteromedial tips of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial." [GOC:mh, ORCiD:0000-0001-9114-8737] comment: This may need to be obsoleted since it looks like the cartilage is either reabsorbed or fused with another skeletal element. -synonym: "hypobranchial 4 bones" EXACT PLURAL [] +synonym: "hypobranchial 4 bones" EXACT OMO:0003004 [] xref: TAO:0001234 is_a: ZFA:0000363 ! hypobranchial bone relationship: develops_from ZFA:0001523 ! hypobranchial 4 cartilage @@ -14493,7 +14492,7 @@ id: ZFA:0001235 name: hypobranchial 3 bone namespace: zebrafish_anatomy def: "Ossifications that develops in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Ossification may begin when the fish is 8mm." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917] -synonym: "hypobranchial 3 bones" EXACT PLURAL [] +synonym: "hypobranchial 3 bones" EXACT OMO:0003004 [] xref: TAO:0001235 is_a: ZFA:0000363 ! hypobranchial bone relationship: develops_from ZFA:0001526 ! hypobranchial 3 cartilage @@ -14506,7 +14505,7 @@ id: ZFA:0001236 name: hypobranchial 2 bone namespace: zebrafish_anatomy def: "Ossification that develop in the small hypobranchial cartilages that lie between the medial tips of the ceratobranchials and copula 1. Small and irregular in shape; ossification may be absent in some adults. Ossification may begin when the fish is 12 mm." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917] -synonym: "hypobranchial 2 bones" EXACT PLURAL [] +synonym: "hypobranchial 2 bones" EXACT OMO:0003004 [] xref: TAO:0001236 is_a: ZFA:0000363 ! hypobranchial bone relationship: develops_from ZFA:0001525 ! hypobranchial 2 cartilage @@ -14531,7 +14530,7 @@ id: ZFA:0001238 name: iris namespace: zebrafish_anatomy def: "Multi-tissue structure that consists of pigmented stroma and is connected to a sphincter muscle and a dilator muscle which open and close the pupil located in the center of the iris." [GOC:mh, http://www.encyclopedia.thefreedictionary.com/Iris+(anatomy), ORCiD:0000-0001-9114-8737] -synonym: "irises" EXACT PLURAL [] +synonym: "irises" EXACT OMO:0003004 [] xref: TAO:0001238 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -14699,7 +14698,7 @@ id: ZFA:0001252 name: pharyngobranchial 3 bone namespace: zebrafish_anatomy def: "Pharyngobranchial bone of the fifth pharyngeal arch that lies approximately posteromedial to epibranchial 2 and medial to epibranchial 3." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pharyngobranchial 3 bones" EXACT PLURAL [] +synonym: "pharyngobranchial 3 bones" EXACT OMO:0003004 [] xref: TAO:0001252 is_a: ZFA:0000527 ! pharyngobranchial bone relationship: develops_from ZFA:0001534 ! pharyngobranchial 3 cartilage @@ -14837,7 +14836,7 @@ name: ovarian follicle stage II namespace: zebrafish_anatomy def: "Stage II follicles (140-340 microns) contain a stage 2 oocyte." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020] synonym: "ovarian follicle stage 2" EXACT [] -synonym: "ovarian follicles stage II" EXACT PLURAL [] +synonym: "ovarian follicles stage II" EXACT OMO:0003004 [] xref: TAO:0001265 is_a: ZFA:0001110 ! ovarian follicle relationship: end ZFS:0000044 ! adult @@ -14849,7 +14848,7 @@ name: ovarian follicle stage III namespace: zebrafish_anatomy def: "Stage III follicles (340-690 microns) contain a stage 3 oocyte." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-961014-1020] synonym: "ovarian follicle stage 3" EXACT [] -synonym: "ovarian follicles stage III" EXACT PLURAL [] +synonym: "ovarian follicles stage III" EXACT OMO:0003004 [] xref: TAO:0001266 is_a: ZFA:0001110 ! ovarian follicle relationship: end ZFS:0000044 ! adult @@ -14874,7 +14873,7 @@ namespace: zebrafish_anatomy def: "Is a duct part of the testis that carries sperm and fluid to the cloaca." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] synonym: "efferent duct" EXACT [] synonym: "efferent tubule" EXACT [] -synonym: "sperm ducts" EXACT PLURAL [] +synonym: "sperm ducts" EXACT OMO:0003004 [] xref: TAO:0001268 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000044 ! adult @@ -14886,7 +14885,7 @@ id: ZFA:0001269 name: regenerating fin namespace: zebrafish_anatomy def: "Fin undergoing the process of regeneration." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "regenerating fins" EXACT PLURAL [] +synonym: "regenerating fins" EXACT OMO:0003004 [] xref: TAO:0001269 is_a: ZFA:0000108 ! fin relationship: end ZFS:0000044 ! adult @@ -15009,7 +15008,7 @@ id: ZFA:0001279 name: branchiostegal ray 1 namespace: zebrafish_anatomy def: "Branchiostegal ray that is the most anterior ray which ossifies last (5.5 mm NL)." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "branchiostegal rays 1" EXACT PLURAL [] +synonym: "branchiostegal rays 1" EXACT OMO:0003004 [] xref: TAO:0001279 is_a: ZFA:0000476 ! branchiostegal ray relationship: end ZFS:0000044 ! adult @@ -15020,7 +15019,7 @@ id: ZFA:0001280 name: branchiostegal ray 3 namespace: zebrafish_anatomy def: "Branchiostegal ray that is the most posterior ray which ossifies first (3.4 mm NL)." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "branchiostegal rays 3" EXACT PLURAL [] +synonym: "branchiostegal rays 3" EXACT OMO:0003004 [] xref: TAO:0001280 is_a: ZFA:0000476 ! branchiostegal ray relationship: end ZFS:0000044 ! adult @@ -15031,7 +15030,7 @@ id: ZFA:0001281 name: branchiostegal ray 2 namespace: zebrafish_anatomy def: "Branchiostegal ray 2 is between rays 1 and 3 and ossifies second." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "branchiostegal rays 2" EXACT PLURAL [] +synonym: "branchiostegal rays 2" EXACT OMO:0003004 [] xref: TAO:0001281 is_a: ZFA:0000476 ! branchiostegal ray relationship: end ZFS:0000044 ! adult @@ -15057,7 +15056,7 @@ id: ZFA:0001283 name: pupil namespace: zebrafish_anatomy def: "Anatomical space that is located in the center of the iris and allows light to impinge on the retina." [GOC:mh, http://www.encyclopedia.thefreedictionary.com/pupil, ORCiD:0000-0001-9114-8737] -synonym: "pupils" EXACT PLURAL [] +synonym: "pupils" EXACT OMO:0003004 [] xref: TAO:0001283 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! adult @@ -15070,7 +15069,7 @@ name: optic fissure namespace: zebrafish_anatomy def: "Groove that is in the ventral optic cup and through which blood vessels pass to the enclosed mesenchyme." [http://www.medical-dictionary.thefreedictionary.com/optic+fissure] synonym: "choroid fissure" RELATED [] -synonym: "optic fissures" EXACT PLURAL [] +synonym: "optic fissures" EXACT OMO:0003004 [] xref: TAO:0001284 is_a: ZFA:0001690 ! groove relationship: end ZFS:0000029 ! pharyngula:prim-5 @@ -15082,7 +15081,7 @@ id: ZFA:0001285 name: intersegmental vessel namespace: zebrafish_anatomy def: "Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these vessels don't have venous or arterial markers." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-030908-4] -synonym: "intersegmental vessels" EXACT PLURAL [] +synonym: "intersegmental vessels" EXACT OMO:0003004 [] synonym: "intersomitic vessels" EXACT [] synonym: "segmental vessel" EXACT [] xref: TAO:0001285 @@ -15109,7 +15108,7 @@ name: renal tubule namespace: zebrafish_anatomy def: "Renal duct that collects filtrate from the renal corpuscle and transports it to the collecting duct. Different parts of the renal tubule reabsorb specific components of the filtrate to leave only waste." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "mesonephric tubule" EXACT [] -synonym: "renal tubules" EXACT PLURAL [] +synonym: "renal tubules" EXACT OMO:0003004 [] xref: TAO:0001287 is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! adult @@ -15122,7 +15121,7 @@ name: renal glomerulus namespace: zebrafish_anatomy def: "The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes, filters blood from the glomerular capillaries." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "glomerular capillary tuft" RELATED [] -synonym: "renal glomeruli" EXACT PLURAL [] +synonym: "renal glomeruli" EXACT OMO:0003004 [] xref: TAO:0001288 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -15188,7 +15187,7 @@ relationship: start ZFS:0000043 ! juvenile:days 45-89 id: ZFA:0001293 name: posterior kidney namespace: zebrafish_anatomy -synonym: "posterior kidneys" EXACT PLURAL [] +synonym: "posterior kidneys" EXACT OMO:0003004 [] xref: TAO:0001293 is_a: ZFA:0000496 ! compound organ relationship: develops_from ZFA:0000151 ! pronephros @@ -15201,7 +15200,7 @@ id: ZFA:0001294 name: epibranchial placode namespace: zebrafish_anatomy def: "Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear and dorsally to the posterior pharyngeal pouches." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31] -synonym: "epibranchial placodes" EXACT PLURAL [] +synonym: "epibranchial placodes" EXACT OMO:0003004 [] xref: TAO:0001294 is_a: ZFA:0001309 ! neurogenic placode relationship: develops_from ZFA:0007061 ! epibranchial field @@ -15337,7 +15336,7 @@ id: ZFA:0001306 name: pharyngeal arch namespace: zebrafish_anatomy def: "One of a series of paired bony or cartilaginous arches that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. There are seven pharyngeal arches." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-010912-16, ZFIN:ZDB-PUB-131119-6, ZFIN:ZDB-PUB-961014-985] -synonym: "pharyngeal arches" EXACT PLURAL [] +synonym: "pharyngeal arches" EXACT OMO:0003004 [] xref: TAO:0001306 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -15373,7 +15372,7 @@ id: ZFA:0001309 name: neurogenic placode namespace: zebrafish_anatomy def: "Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31] -synonym: "neurogenic placodes" EXACT PLURAL [] +synonym: "neurogenic placodes" EXACT OMO:0003004 [] xref: TAO:0001309 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0007059 ! neurogenic field @@ -15386,7 +15385,7 @@ id: ZFA:0001310 name: dorsolateral placode namespace: zebrafish_anatomy def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "dorsolateral placodes" EXACT PLURAL [] +synonym: "dorsolateral placodes" EXACT OMO:0003004 [] xref: TAO:0001310 is_a: ZFA:0001309 ! neurogenic placode relationship: develops_from ZFA:0007060 ! dorsolateral field @@ -15433,7 +15432,7 @@ name: posterior lateral line ganglion namespace: zebrafish_anatomy def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "pLLg" EXACT [] -synonym: "posterior lateral line ganglia" EXACT PLURAL [] +synonym: "posterior lateral line ganglia" EXACT OMO:0003004 [] xref: TAO:0001314 is_a: ZFA:0000120 ! lateral line ganglion relationship: develops_from ZFA:0001156 ! posterior lateral line placode @@ -15459,7 +15458,7 @@ id: ZFA:0001316 name: anterior lateral line placode namespace: zebrafish_anatomy def: "Dorsolateral placode that gives rise to the anterior lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "anterior lateral line placodes" EXACT PLURAL [] +synonym: "anterior lateral line placodes" EXACT OMO:0003004 [] xref: TAO:0001316 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000031 ! pharyngula:prim-25 @@ -15472,7 +15471,7 @@ name: endocardial cushion namespace: zebrafish_anatomy def: "Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves." [GOC:cvs, ORCiD:0000-0002-2244-7917] comment: ZDB-PUB-080309-14 says these don't exist but looked at 55 hpf rather then 36 hpf. -synonym: "endocardial cushions" EXACT PLURAL [] +synonym: "endocardial cushions" EXACT OMO:0003004 [] xref: TAO:0001317 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000035 ! larval:protruding-mouth @@ -15518,7 +15517,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0001321 name: neurocranial trabecula namespace: zebrafish_anatomy -synonym: "neurocranial trabeculae" EXACT PLURAL [] +synonym: "neurocranial trabeculae" EXACT OMO:0003004 [] synonym: "trabecula" EXACT [] synonym: "trabecular cartilage" EXACT [] xref: TAO:0001321 @@ -15569,7 +15568,7 @@ id: ZFA:0001325 name: neural prezygapophysis namespace: zebrafish_anatomy def: "Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "neural prezygapophyses" EXACT PLURAL [] +synonym: "neural prezygapophyses" EXACT OMO:0003004 [] synonym: "neural prezygopophyses" EXACT [] xref: TAO:0001325 is_a: ZFA:0001591 ! endochondral bone @@ -15604,7 +15603,7 @@ name: neuromere namespace: zebrafish_anatomy def: "A metameric segment of the central nervous system." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "neural segment" EXACT [] -synonym: "neuromeres" EXACT PLURAL [] +synonym: "neuromeres" EXACT OMO:0003004 [] xref: TAO:0001328 is_a: ZFA:0001308 ! organism subdivision relationship: end ZFS:0000044 ! adult @@ -15628,7 +15627,7 @@ id: ZFA:0001330 name: retinal outer plexiform layer namespace: zebrafish_anatomy def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "retinal outer plexiform layers" EXACT PLURAL [] +synonym: "retinal outer plexiform layers" EXACT OMO:0003004 [] xref: TAO:0001330 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -15641,7 +15640,7 @@ name: outer limiting membrane namespace: zebrafish_anatomy def: "Layer that separates the inner segment portions of the photo receptors from their cell nucleus." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "external limiting membrane" EXACT [] -synonym: "outer limiting membranes" EXACT PLURAL [] +synonym: "outer limiting membranes" EXACT OMO:0003004 [] xref: TAO:0001331 is_a: ZFA:0000382 ! acellular anatomical structure relationship: end ZFS:0000044 ! adult @@ -15653,7 +15652,7 @@ id: ZFA:0001332 name: spinal neuromere namespace: zebrafish_anatomy synonym: "spinal cord segment" EXACT [] -synonym: "spinal neuromeres" EXACT PLURAL [] +synonym: "spinal neuromeres" EXACT OMO:0003004 [] xref: TAO:0001332 is_a: ZFA:0001328 ! neuromere is_a: ZFA:0001488 ! multi-tissue structure @@ -15683,7 +15682,7 @@ id: ZFA:0001335 name: supradorsal namespace: zebrafish_anatomy def: "Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001)." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "supradorsals" EXACT PLURAL [] +synonym: "supradorsals" EXACT OMO:0003004 [] xref: TAO:0001335 is_a: ZFA:0001457 ! postcranial axial cartilage relationship: end ZFS:0000044 ! adult @@ -15695,7 +15694,7 @@ id: ZFA:0001336 name: neural spine namespace: zebrafish_anatomy def: "Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon)." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "neural spines" EXACT PLURAL [] +synonym: "neural spines" EXACT OMO:0003004 [] xref: TAO:0001336 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! adult @@ -15813,7 +15812,7 @@ name: stratum fibrosum et griseum superficiale namespace: zebrafish_anatomy def: "Layer of the optic tectum that is ventral to the stratum opticum and dorsal to the stratum griseum centrale, contains three sublaminae. Has hypothalamic and retinal inputs." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-081218-37, ZFIN:ZDB-PUB-101011-44, ZFIN:ZDB-PUB-180207-5] synonym: "SFGS" RELATED [] -synonym: "strata fibrosum et griseum superficiales" EXACT PLURAL [] +synonym: "strata fibrosum et griseum superficiales" EXACT OMO:0003004 [] xref: TAO:0001347 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -15825,7 +15824,7 @@ id: ZFA:0001348 name: stratum marginale namespace: zebrafish_anatomy def: "Dorsalmost layer of the tectal neuropile that does not receive direct retinal inputs, receives axonal projections from the torus longitudinalis." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180207-5] -synonym: "strata marginale" EXACT PLURAL [] +synonym: "strata marginale" EXACT OMO:0003004 [] synonym: "stratum fibrosum marginale" EXACT [ZFIN:ZDB-PUB-180207-5] xref: TAO:0001348 is_a: ZFA:0001477 ! portion of tissue @@ -15838,7 +15837,7 @@ id: ZFA:0001349 name: stratum opticum namespace: zebrafish_anatomy def: "Portion of tissue that is the most superficial layer of the tectal neuropil closest to the eye target of the retinal axons." [ZFIN:ZDB-PUB-101101-16] -synonym: "strata opticum" EXACT PLURAL [] +synonym: "strata opticum" EXACT OMO:0003004 [] xref: TAO:0001349 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -15860,7 +15859,7 @@ id: ZFA:0001351 name: stratum album centrale namespace: zebrafish_anatomy def: "Has hypothalamic inputs." [ZFIN:ZDB-PUB-180207-5] -synonym: "strata album centrales" EXACT PLURAL [] +synonym: "strata album centrales" EXACT OMO:0003004 [] xref: TAO:0001351 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -15953,7 +15952,7 @@ name: parapophysis namespace: zebrafish_anatomy def: "Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "lateral process of basiventral" EXACT [] -synonym: "parapophyses" EXACT PLURAL [] +synonym: "parapophyses" EXACT OMO:0003004 [] synonym: "transverse process" EXACT [] xref: TAO:0001362 is_a: ZFA:0001591 ! endochondral bone @@ -16095,7 +16094,7 @@ name: migratory slow muscle precursor cell namespace: zebrafish_anatomy def: "Cells that initially are located adjacent to the spinal cord and notochord that migrate from their initial medial position radially through the myotome to the lateral surface of the somites." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-961219-12] subset: cell_slim -synonym: "migratory slow muscle precursor cells" EXACT PLURAL [] +synonym: "migratory slow muscle precursor cells" EXACT OMO:0003004 [] xref: TAO:0001373 is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0000003 ! adaxial cell @@ -16178,7 +16177,7 @@ id: ZFA:0001381 name: hypohyal bone namespace: zebrafish_anatomy def: "Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "hypohyals" EXACT PLURAL [] +synonym: "hypohyals" EXACT OMO:0003004 [] xref: TAO:0001381 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001400 ! ceratohyal cartilage @@ -16191,7 +16190,7 @@ id: ZFA:0001382 name: epibranchial uncinate process namespace: zebrafish_anatomy def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "epibranchial uncinate processes" EXACT PLURAL [] +synonym: "epibranchial uncinate processes" EXACT OMO:0003004 [] xref: TAO:0001382 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! adult @@ -16203,7 +16202,7 @@ id: ZFA:0001383 name: fin bud namespace: zebrafish_anatomy def: "Surface structure that develops into a paired fin." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "fin buds" EXACT PLURAL [] +synonym: "fin buds" EXACT OMO:0003004 [] xref: TAO:0001383 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000042 ! juvenile:days 30-44 @@ -16214,7 +16213,7 @@ id: ZFA:0001384 name: pelvic fin bud namespace: zebrafish_anatomy def: "Fin bud that develops into the pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "pelvic fin buds" EXACT PLURAL [] +synonym: "pelvic fin buds" EXACT OMO:0003004 [] xref: TAO:0001384 is_a: ZFA:0001383 ! fin bud relationship: develops_from ZFA:0001454 ! pelvic fin field @@ -16226,7 +16225,7 @@ id: ZFA:0001385 name: apical ectodermal ridge pelvic fin bud namespace: zebrafish_anatomy def: "Apical ectodermal ridge that is part of the pelvic fin bud." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "apical ectodermal ridge pelvic fin buds" EXACT PLURAL [] +synonym: "apical ectodermal ridge pelvic fin buds" EXACT OMO:0003004 [] xref: TAO:0001385 is_a: ZFA:0001702 ! apical ectodermal ridge relationship: end ZFS:0000000 ! unknown @@ -16238,7 +16237,7 @@ id: ZFA:0001386 name: mesoderm pelvic fin bud namespace: zebrafish_anatomy def: "Mesoderm part of pelvic fin bud." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "mesoderm pelvic fin buds" EXACT PLURAL [] +synonym: "mesoderm pelvic fin buds" EXACT OMO:0003004 [] xref: TAO:0001386 is_a: ZFA:0000041 ! mesoderm relationship: end ZFS:0000000 ! unknown @@ -16260,7 +16259,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0001388 name: epithelial mesenchymal boundary namespace: zebrafish_anatomy -synonym: "epithelial mesenchymal boundarys" EXACT PLURAL [] +synonym: "epithelial mesenchymal boundarys" EXACT OMO:0003004 [] xref: TAO:0001388 is_a: ZFA:0001689 ! anatomical line relationship: end ZFS:0000044 ! adult @@ -16286,7 +16285,7 @@ id: ZFA:0001390 name: pancreatic bud namespace: zebrafish_anatomy def: "Embryonic structure that develops from the pancreas primordium and develops into the pancreas. At Prim-5 the buds are located between the dorsal aorta and the posterior cardinal vein." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-191011-21] -synonym: "pancreatic buds" EXACT PLURAL [] +synonym: "pancreatic buds" EXACT OMO:0003004 [] xref: TAO:0001390 is_a: ZFA:0001105 ! embryonic structure relationship: develops_from ZFA:0000254 ! pancreas primordium @@ -16299,7 +16298,7 @@ id: ZFA:0001391 name: anterior lateral line ganglion namespace: zebrafish_anatomy def: "The anterior lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "anterior lateral line ganglia" EXACT PLURAL [] +synonym: "anterior lateral line ganglia" EXACT OMO:0003004 [] xref: TAO:0001391 is_a: ZFA:0000120 ! lateral line ganglion relationship: end ZFS:0000044 ! adult @@ -16369,7 +16368,7 @@ id: ZFA:0001397 name: post-Weberian supraneural namespace: zebrafish_anatomy def: "Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. Supraneural 4 has been lost in zebrafish." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-031103-13] -synonym: "post-Weberian supraneurals" EXACT PLURAL [] +synonym: "post-Weberian supraneurals" EXACT OMO:0003004 [] xref: TAO:0001397 is_a: ZFA:0000442 ! supraneural relationship: end ZFS:0000044 ! adult @@ -16444,7 +16443,7 @@ name: preethmoid bone namespace: zebrafish_anatomy def: "Small rounded to egg-shaped cartilage bone that sits in an anteriolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "pre-ethmoid" EXACT [] -synonym: "preethmoid bones" EXACT PLURAL [] +synonym: "preethmoid bones" EXACT OMO:0003004 [] xref: TAO:0001404 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001405 ! ethmoid cartilage @@ -16530,7 +16529,7 @@ name: sclerotic bone namespace: zebrafish_anatomy def: "A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball. The sclerotic bones also called scleral ossicles form from the scleral cartilage between the sclera and the optic choroid. The ossicles develop via unilateral perichondral ossification of the scleral cartilage from two centers opposite one another in the eye." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-070629-20] synonym: "scleral ossicle" EXACT [] -synonym: "sclerotic bones" EXACT PLURAL [] +synonym: "sclerotic bones" EXACT OMO:0003004 [] xref: TAO:0001411 is_a: ZFA:0001591 ! endochondral bone relationship: develops_from ZFA:0001509 ! sclerotic cartilage @@ -16574,7 +16573,7 @@ id: ZFA:0001415 name: pelvic radial 2 namespace: zebrafish_anatomy def: "Second radial of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pelvic radials 2" EXACT PLURAL [] +synonym: "pelvic radials 2" EXACT OMO:0003004 [] xref: TAO:0001415 is_a: ZFA:0000508 ! pelvic radial relationship: develops_from ZFA:0001541 ! pelvic radial 2 cartilage @@ -16586,7 +16585,7 @@ id: ZFA:0001416 name: pelvic radial 3 namespace: zebrafish_anatomy def: "Third radial of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pelvic radials 3" EXACT PLURAL [] +synonym: "pelvic radials 3" EXACT OMO:0003004 [] xref: TAO:0001416 is_a: ZFA:0000508 ! pelvic radial relationship: develops_from ZFA:0001540 ! pelvic radial 3 cartilage @@ -16598,7 +16597,7 @@ id: ZFA:0001417 name: pelvic radial 1 namespace: zebrafish_anatomy def: "First radial of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pelvic radials 1" EXACT PLURAL [] +synonym: "pelvic radials 1" EXACT OMO:0003004 [] xref: TAO:0001417 is_a: ZFA:0000508 ! pelvic radial relationship: develops_from ZFA:0001542 ! pelvic radial 1 cartilage @@ -16610,7 +16609,7 @@ id: ZFA:0001418 name: dorsal fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the dorsal fin. Bony, bilaterally paired segmented dermal ossification extending distally from the endoskeletal supports. They develop around actinotrichia as part of the dermal exoskeleton." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031103-13] -synonym: "dorsal fin lepidotrichia" EXACT PLURAL [] +synonym: "dorsal fin lepidotrichia" EXACT OMO:0003004 [] synonym: "dorsal fin ray" EXACT [] xref: TAO:0001418 is_a: ZFA:0001554 ! lepidotrichium @@ -16647,7 +16646,7 @@ id: ZFA:0001421 name: anal fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the anal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "anal fin lepidotrichia" EXACT PLURAL [] +synonym: "anal fin lepidotrichia" EXACT OMO:0003004 [] synonym: "anal fin ray" EXACT [] xref: TAO:0001421 is_a: ZFA:0001554 ! lepidotrichium @@ -16672,7 +16671,7 @@ id: ZFA:0001423 name: parachordal cartilage namespace: zebrafish_anatomy def: "Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "parachordal cartilages" EXACT PLURAL [] +synonym: "parachordal cartilages" EXACT OMO:0003004 [] xref: TAO:0001423 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000000 ! unknown @@ -16699,7 +16698,7 @@ relationship: start ZFS:0000032 ! pharyngula:high-pec id: ZFA:0001425 name: basal plate cartilage namespace: zebrafish_anatomy -synonym: "basal plate cartilages" EXACT PLURAL [] +synonym: "basal plate cartilages" EXACT OMO:0003004 [] xref: TAO:0001425 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! adult @@ -16713,7 +16712,7 @@ name: posterior naris namespace: zebrafish_anatomy def: "Nares that form at 40-44dpf that open to the posterior region of the olfactory pit allowing water to exit the pit." [ZFIN:ZDB-PUB-961014-399] synonym: "excurrent nostril" EXACT [ZFIN:ZDB-PUB-961014-399] -synonym: "posterior nares" EXACT PLURAL [] +synonym: "posterior nares" EXACT OMO:0003004 [] xref: TAO:0001426 is_a: ZFA:0000550 ! naris relationship: end ZFS:0000044 ! adult @@ -16724,7 +16723,7 @@ id: ZFA:0001427 name: anterior naris namespace: zebrafish_anatomy def: "Nares that form at 40-44dpf that open to the anterior region of the olfactory pit allowing water to enter the pit." [ZFIN:ZDB-PUB-961014-399] -synonym: "anterior nares" EXACT PLURAL [] +synonym: "anterior nares" EXACT OMO:0003004 [] synonym: "incurrent nostril" EXACT [ZFIN:ZDB-PUB-961014-399] xref: TAO:0001427 is_a: ZFA:0000550 ! naris @@ -16737,7 +16736,7 @@ name: olfactory rosette namespace: zebrafish_anatomy def: "The highly folded olfactory epithelium." [GOC:mh, ISBN:9789812388216, ORCiD:0000-0001-9114-8737] comment: Olfactory epithelium may be part of olfactory rosette. \nThe epithelium exists before becoming folded into the rosette. -synonym: "olfactory rosettes" EXACT PLURAL [] +synonym: "olfactory rosettes" EXACT OMO:0003004 [] xref: TAO:0001428 is_a: ZFA:0001486 ! epithelium relationship: end ZFS:0000044 ! adult @@ -16782,7 +16781,7 @@ id: ZFA:0001432 name: anterior sclerotic bone namespace: zebrafish_anatomy def: "Sclerotic bone that is located anterior to the eye." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "anterior sclerotic bones" EXACT PLURAL [] +synonym: "anterior sclerotic bones" EXACT OMO:0003004 [] xref: TAO:0001432 is_a: ZFA:0001411 ! sclerotic bone relationship: end ZFS:0000044 ! adult @@ -16793,7 +16792,7 @@ id: ZFA:0001433 name: posterior sclerotic bone namespace: zebrafish_anatomy def: "Sclerotic bone that is located posterior to the eye." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "posterior sclerotic bones" EXACT PLURAL [] +synonym: "posterior sclerotic bones" EXACT OMO:0003004 [] xref: TAO:0001433 is_a: ZFA:0001411 ! sclerotic bone relationship: end ZFS:0000044 ! adult @@ -16863,7 +16862,7 @@ id: ZFA:0001439 name: anatomical system namespace: zebrafish_anatomy def: "Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "anatomical systems" EXACT PLURAL [] +synonym: "anatomical systems" EXACT OMO:0003004 [] xref: CARO:0000011 xref: TAO:0001439 is_a: ZFA:0001512 ! anatomical group @@ -16940,7 +16939,7 @@ id: ZFA:0001445 name: choroid plexus tectal ventricle namespace: zebrafish_anatomy def: "Choroid plexus that is part of the tectal ventricle." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "choroid plexus tectal ventricles" EXACT PLURAL [] +synonym: "choroid plexus tectal ventricles" EXACT OMO:0003004 [] xref: TAO:0001445 is_a: ZFA:0001443 ! choroid plexus relationship: end ZFS:0000044 ! adult @@ -16974,7 +16973,7 @@ id: ZFA:0001448 name: ultimobranchial body namespace: zebrafish_anatomy def: "Glands that produce calcitonin. In adult fish the glands lie as two groups of follicles at the transverse septum close to the sinus venosus." [ZFIN:ZDB-PUB-060517-11] -synonym: "ultimobranchial bodies" EXACT PLURAL [] +synonym: "ultimobranchial bodies" EXACT OMO:0003004 [] xref: TAO:0001448 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -16986,7 +16985,7 @@ id: ZFA:0001449 name: mesenchyme pelvic fin namespace: zebrafish_anatomy def: "Mesenchyme that is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "mesenchyme pelvic fins" EXACT PLURAL [] +synonym: "mesenchyme pelvic fins" EXACT OMO:0003004 [] xref: TAO:0001449 is_a: ZFA:0000393 ! mesenchyme relationship: develops_from ZFA:0001386 ! mesoderm pelvic fin bud @@ -16999,7 +16998,7 @@ id: ZFA:0001450 name: apical ectodermal ridge pelvic fin namespace: zebrafish_anatomy def: "Apical ectodermal ridge that is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "apical ectodermal ridge pelvic fins" EXACT PLURAL [] +synonym: "apical ectodermal ridge pelvic fins" EXACT OMO:0003004 [] xref: TAO:0001450 is_a: ZFA:0001702 ! apical ectodermal ridge relationship: develops_from ZFA:0001385 ! apical ectodermal ridge pelvic fin bud @@ -17036,7 +17035,7 @@ id: ZFA:0001453 name: pectoral fin field namespace: zebrafish_anatomy def: "Embryonic region that develops into the pectoral fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pectoral fin fields" EXACT PLURAL [] +synonym: "pectoral fin fields" EXACT OMO:0003004 [] xref: TAO:0001453 is_a: ZFA:0001105 ! embryonic structure relationship: end ZFS:0000029 ! pharyngula:prim-5 @@ -17048,7 +17047,7 @@ id: ZFA:0001454 name: pelvic fin field namespace: zebrafish_anatomy def: "Portion of tissue in the pelvic region that develops into the pelvic fin bud." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pelvic fin fields" EXACT PLURAL [] +synonym: "pelvic fin fields" EXACT OMO:0003004 [] xref: TAO:0001454 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000040 ! larval:days 14-20 @@ -17084,7 +17083,7 @@ id: ZFA:0001457 name: postcranial axial cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of the axial skeleton." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "postcranial axial cartilages" EXACT PLURAL [] +synonym: "postcranial axial cartilages" EXACT OMO:0003004 [] xref: TAO:0001457 is_a: ZFA:0001501 ! cartilage element relationship: end ZFS:0000044 ! adult @@ -17096,7 +17095,7 @@ id: ZFA:0001458 name: cranial cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of the cranium." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "cranial cartilages" EXACT PLURAL [] +synonym: "cranial cartilages" EXACT OMO:0003004 [] xref: TAO:0001458 is_a: ZFA:0001501 ! cartilage element relationship: end ZFS:0000044 ! adult @@ -17108,7 +17107,7 @@ id: ZFA:0001459 name: pelvic fin cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of the pelvic fin." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pelvic fin cartilages" EXACT PLURAL [] +synonym: "pelvic fin cartilages" EXACT OMO:0003004 [] xref: TAO:0001459 is_a: ZFA:0001543 ! paired fin cartilage relationship: end ZFS:0000044 ! adult @@ -17119,7 +17118,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0001460 name: pharyngeal arch cartilage namespace: zebrafish_anatomy -synonym: "pharyngeal arch cartilages" EXACT PLURAL [] +synonym: "pharyngeal arch cartilages" EXACT OMO:0003004 [] synonym: "splanchnocranium cartilage" EXACT [] xref: TAO:0001460 is_a: ZFA:0001458 ! cranial cartilage @@ -17144,7 +17143,7 @@ id: ZFA:0001462 name: somite border namespace: zebrafish_anatomy def: "Anatomical surface separating somites." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "somite border cell" EXACT PLURAL [] +synonym: "somite border cell" EXACT OMO:0003004 [] synonym: "somite boundary" RELATED [] xref: TAO:0001462 is_a: ZFA:0005594 ! anatomical surface @@ -17157,7 +17156,7 @@ id: ZFA:0001463 name: melanophore stripe namespace: zebrafish_anatomy def: "Surface structure composed of an array of melanophores arranged in a stripe. Stripes are oriented from rostral to caudal." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "melanophore stripes" EXACT PLURAL [] +synonym: "melanophore stripes" EXACT OMO:0003004 [] xref: TAO:0001463 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! adult @@ -17169,7 +17168,7 @@ id: ZFA:0001464 name: retinal outer nuclear layer namespace: zebrafish_anatomy def: "The layer within the retina where the photoreceptor cell bodies reside." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "retinal outer nuclear layers" EXACT PLURAL [] +synonym: "retinal outer nuclear layers" EXACT OMO:0003004 [] xref: TAO:0001464 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -17181,7 +17180,7 @@ id: ZFA:0001465 name: photoreceptor inner segment layer namespace: zebrafish_anatomy def: "Layer of the retina composed of the inner segments of the photoreceptor cells." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "photoreceptor inner segment layers" EXACT PLURAL [] +synonym: "photoreceptor inner segment layers" EXACT OMO:0003004 [] xref: TAO:0001465 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -17193,7 +17192,7 @@ id: ZFA:0001466 name: photoreceptor outer segment layer namespace: zebrafish_anatomy def: "Layer of the retina composed of the outer segments of the photoreceptor cells. The photoreceptor outer segment is a specialized primary cilium consisting of a microtubule-based axoneme and regular stacks of membrane folds or disks containing the photopigments (opsins) required for the phototransduction cascade." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-110811-12] -synonym: "photoreceptor outer segment layers" EXACT PLURAL [] +synonym: "photoreceptor outer segment layers" EXACT OMO:0003004 [] xref: TAO:0001466 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -17225,7 +17224,7 @@ id: ZFA:0001469 name: lateral line namespace: zebrafish_anatomy def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [DOI:10.1159/000115896, GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "lateral lines" EXACT PLURAL [] +synonym: "lateral lines" EXACT OMO:0003004 [] xref: TAO:0001469 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -17237,7 +17236,7 @@ id: ZFA:0001470 name: anterior lateral line namespace: zebrafish_anatomy def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3] -synonym: "anterior lateral lines" EXACT PLURAL [] +synonym: "anterior lateral lines" EXACT OMO:0003004 [] xref: TAO:0001470 is_a: ZFA:0001469 ! lateral line relationship: develops_from ZFA:0005117 ! anterior lateral line primordium @@ -17273,7 +17272,7 @@ name: deep blastomere namespace: zebrafish_anatomy def: "Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim -synonym: "deep blastomeres" EXACT PLURAL [] +synonym: "deep blastomeres" EXACT OMO:0003004 [] xref: TAO:0001473 is_a: ZFA:0000093 ! blastomere relationship: end ZFS:0000015 ! blastula:dome @@ -17324,7 +17323,7 @@ id: ZFA:0001479 name: lateral line nerve namespace: zebrafish_anatomy def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "lateral line nerves" EXACT PLURAL [] +synonym: "lateral line nerves" EXACT OMO:0003004 [] xref: TAO:0001479 is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! adult @@ -17337,7 +17336,7 @@ name: dorsal anterior lateral line nerve namespace: zebrafish_anatomy def: "Lateral line nerve that originates within the dorsal anterior lateral line ganglion and innervates the otic, supraorbital, and infraorbital neuromasts." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-000523-3] synonym: "anterodorsal lateral line nerve" EXACT [] -synonym: "dorsal anterior lateral line nerves" EXACT PLURAL [] +synonym: "dorsal anterior lateral line nerves" EXACT OMO:0003004 [] xref: TAO:0001480 is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! adult @@ -17350,7 +17349,7 @@ name: ventral anterior lateral line nerve namespace: zebrafish_anatomy def: "Lateral line nerve that originates within the ventral anterior lateral line ganglion and innervates the mandibular and opercular neuromasts." [GOC:ymb, ORCiD:0000-0002-9900-7880] synonym: "anteroventral lateral line nerve" EXACT [] -synonym: "ventral anterior lateral line nerves" EXACT PLURAL [] +synonym: "ventral anterior lateral line nerves" EXACT OMO:0003004 [] xref: TAO:0001481 is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! adult @@ -17362,7 +17361,7 @@ id: ZFA:0001482 name: middle lateral line nerve namespace: zebrafish_anatomy def: "Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "middle lateral line nerves" EXACT PLURAL [] +synonym: "middle lateral line nerves" EXACT OMO:0003004 [] xref: TAO:0001482 is_a: ZFA:0001479 ! lateral line nerve relationship: end ZFS:0000044 ! adult @@ -17375,7 +17374,7 @@ id: ZFA:0001483 name: middle lateral line ganglion namespace: zebrafish_anatomy def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "middle lateral line ganglia" EXACT PLURAL [] +synonym: "middle lateral line ganglia" EXACT OMO:0003004 [] xref: TAO:0001483 is_a: ZFA:0000120 ! lateral line ganglion relationship: end ZFS:0000044 ! adult @@ -17388,7 +17387,7 @@ name: superficial blastomere namespace: zebrafish_anatomy def: "Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres." [ZFIN:ZDB-PUB-961014-576] subset: cell_slim -synonym: "superficial blastomeres" EXACT PLURAL [] +synonym: "superficial blastomeres" EXACT OMO:0003004 [] xref: TAO:0001484 is_a: ZFA:0000093 ! blastomere relationship: end ZFS:0000015 ! blastula:dome @@ -17399,7 +17398,7 @@ id: ZFA:0001485 name: basal lamina namespace: zebrafish_anatomy def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "basal laminae" EXACT PLURAL [] +synonym: "basal laminae" EXACT OMO:0003004 [] xref: CARO:0000065 xref: TAO:0001485 is_a: ZFA:0000382 ! acellular anatomical structure @@ -17434,7 +17433,7 @@ id: ZFA:0001488 name: multi-tissue structure namespace: zebrafish_anatomy def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "multi-tissue structures" EXACT PLURAL [] +synonym: "multi-tissue structures" EXACT OMO:0003004 [] xref: CARO:0000055 xref: TAO:0001488 is_a: ZFA:0000037 ! anatomical structure @@ -17446,7 +17445,7 @@ id: ZFA:0001489 name: compound organ component namespace: zebrafish_anatomy def: "Multi-tissue structure that is part of a compound organ." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "compound organ components" EXACT PLURAL [] +synonym: "compound organ components" EXACT OMO:0003004 [] xref: CARO:0000019 xref: TAO:0001489 is_a: ZFA:0001488 ! multi-tissue structure @@ -17458,7 +17457,7 @@ id: ZFA:0001490 name: cavitated compound organ namespace: zebrafish_anatomy def: "Compound organ that contains one or more macroscopic anatomical spaces." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "cavitated compound organs" EXACT PLURAL [] +synonym: "cavitated compound organs" EXACT OMO:0003004 [] xref: CARO:0000072 xref: TAO:0001490 is_a: ZFA:0000496 ! compound organ @@ -17470,7 +17469,7 @@ id: ZFA:0001491 name: solid compound organ namespace: zebrafish_anatomy def: "Compound organ that does not contain macroscopic anatomical spaces." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "solid compound organs" EXACT PLURAL [] +synonym: "solid compound organs" EXACT OMO:0003004 [] xref: CARO:0000074 xref: TAO:0001491 is_a: ZFA:0000496 ! compound organ @@ -17482,7 +17481,7 @@ id: ZFA:0001492 name: simple organ namespace: zebrafish_anatomy def: "Multi-tissue structure that is not part of a compound organ." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "simple organs" EXACT PLURAL [] +synonym: "simple organs" EXACT OMO:0003004 [] xref: CARO:0000021 xref: TAO:0001492 is_a: ZFA:0001488 ! multi-tissue structure @@ -17494,7 +17493,7 @@ id: ZFA:0001493 name: atypical epithelium namespace: zebrafish_anatomy def: "Epithelium that consists of epithelial cells not arranged in one or more layers." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "atypical epithelia" EXACT PLURAL [] +synonym: "atypical epithelia" EXACT OMO:0003004 [] xref: CARO:0000071 xref: TAO:0001493 is_a: ZFA:0001486 ! epithelium @@ -17517,7 +17516,7 @@ id: ZFA:0001495 name: unilaminar epithelium namespace: zebrafish_anatomy def: "Epithelium that consists of a single layer of epithelial cells." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "unilaminar epithelia" EXACT PLURAL [] +synonym: "unilaminar epithelia" EXACT OMO:0003004 [] xref: CARO:0000073 xref: TAO:0001495 is_a: ZFA:0001486 ! epithelium @@ -17529,7 +17528,7 @@ id: ZFA:0001496 name: simple columnar epithelium namespace: zebrafish_anatomy def: "Unilaminar epithelium that consists of a single layer of columnar cells." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "simple columnar epithelia" EXACT PLURAL [] +synonym: "simple columnar epithelia" EXACT OMO:0003004 [] xref: CARO:0000068 xref: TAO:0001496 is_a: ZFA:0001495 ! unilaminar epithelium @@ -17541,7 +17540,7 @@ id: ZFA:0001497 name: simple cuboidal epithelium namespace: zebrafish_anatomy def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "simple cuboidal epithelia" EXACT PLURAL [] +synonym: "simple cuboidal epithelia" EXACT OMO:0003004 [] xref: CARO:0000067 xref: TAO:0001497 is_a: ZFA:0001495 ! unilaminar epithelium @@ -17553,7 +17552,7 @@ id: ZFA:0001498 name: simple squamous epithelium namespace: zebrafish_anatomy def: "Unilaminar epithelium that consists of a single layer of squamous cells." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "simple squamous epithelia" EXACT PLURAL [] +synonym: "simple squamous epithelia" EXACT OMO:0003004 [] xref: CARO:0000070 xref: TAO:0001498 is_a: ZFA:0001495 ! unilaminar epithelium @@ -17589,7 +17588,7 @@ id: ZFA:0001501 name: cartilage element namespace: zebrafish_anatomy def: "Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator] -synonym: "cartilages" EXACT PLURAL [] +synonym: "cartilages" EXACT OMO:0003004 [] xref: TAO:0001501 xref: VSAO:0000000 is_a: ZFA:0005494 ! skeletal element @@ -17612,7 +17611,7 @@ id: ZFA:0001503 name: lamina orbitonasalis namespace: zebrafish_anatomy def: "Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anteriolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "laminas orbitonasalis" EXACT PLURAL [] +synonym: "laminas orbitonasalis" EXACT OMO:0003004 [] xref: TAO:0001503 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000039 ! larval:days 7-13 @@ -17624,7 +17623,7 @@ id: ZFA:0001504 name: occipital arch cartilage namespace: zebrafish_anatomy def: "Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf)." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "occipital arch cartilages" EXACT PLURAL [] +synonym: "occipital arch cartilages" EXACT OMO:0003004 [] xref: TAO:0001504 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000038 ! larval:day 6 @@ -17637,7 +17636,7 @@ name: taenia marginalis anterior namespace: zebrafish_anatomy def: "Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anteriolateral edge of the ethmoid plate." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "orbital cartilage" RELATED [] -synonym: "taeniae marginales anterior" EXACT PLURAL [] +synonym: "taeniae marginales anterior" EXACT OMO:0003004 [] xref: TAO:0001505 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! adult @@ -17661,7 +17660,7 @@ id: ZFA:0001507 name: trabecula cranii namespace: zebrafish_anatomy def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "trabeculae cranii" EXACT PLURAL [] +synonym: "trabeculae cranii" EXACT OMO:0003004 [] xref: TAO:0001507 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! adult @@ -17688,7 +17687,7 @@ name: sclerotic cartilage namespace: zebrafish_anatomy def: "Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye. It lies between t lies between the sclera and the optic choroid." [ZFIN:ZDB-PUB-070629-20] synonym: "scleral cartilage" RELATED [] -synonym: "sclerotic cartilages" EXACT PLURAL [] +synonym: "sclerotic cartilages" EXACT OMO:0003004 [] xref: TAO:0001509 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! adult @@ -17737,7 +17736,7 @@ id: ZFA:0001513 name: dermomyotome namespace: zebrafish_anatomy def: "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-060124-14] -synonym: "dermomyotomes" EXACT PLURAL [] +synonym: "dermomyotomes" EXACT OMO:0003004 [] xref: TAO:0001513 is_a: ZFA:0001486 ! epithelium relationship: develops_from ZFA:0000155 ! somite @@ -17749,7 +17748,7 @@ id: ZFA:0001514 name: bone element namespace: zebrafish_anatomy def: "Skeletal element that is composed of bone tissue." [VSAO:curator] -synonym: "bones" EXACT PLURAL [] +synonym: "bones" EXACT OMO:0003004 [] xref: TAO:0001514 xref: VSAO:0000057 is_a: ZFA:0005494 ! skeletal element @@ -17762,7 +17761,7 @@ name: taenia marginalis posterior namespace: zebrafish_anatomy def: "Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "orbital cartilage" RELATED [] -synonym: "taeniae marginales posterior" EXACT PLURAL [] +synonym: "taeniae marginales posterior" EXACT OMO:0003004 [] xref: TAO:0001515 is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000044 ! adult @@ -17775,7 +17774,7 @@ id: ZFA:0001516 name: ceratobranchial cartilage namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "ceratobranchial cartilages" EXACT PLURAL [] +synonym: "ceratobranchial cartilages" EXACT OMO:0003004 [] xref: TAO:0001516 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! adult @@ -17842,7 +17841,7 @@ id: ZFA:0001522 name: hypobranchial cartilage namespace: zebrafish_anatomy def: "Small rod-like cartilage that forms between the median copulae and the ceratobranchial cartilages." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "hypobranchial cartilages" EXACT PLURAL [] +synonym: "hypobranchial cartilages" EXACT OMO:0003004 [] xref: TAO:0001522 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! adult @@ -17854,7 +17853,7 @@ id: ZFA:0001523 name: hypobranchial 4 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 4; these are not obviously present in mature specimens, due either to resorption or fusion to the cartilaginous anterior tip of ceratobranchial 4." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "hypobranchial 4 cartilages" EXACT PLURAL [] +synonym: "hypobranchial 4 cartilages" EXACT OMO:0003004 [] xref: TAO:0001523 is_a: ZFA:0001522 ! hypobranchial cartilage relationship: end ZFS:0000044 ! adult @@ -17866,7 +17865,7 @@ id: ZFA:0001524 name: hypobranchial 1 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 1, lateral to copula 1." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "hypobranchial 1 cartilages" EXACT PLURAL [] +synonym: "hypobranchial 1 cartilages" EXACT OMO:0003004 [] xref: TAO:0001524 is_a: ZFA:0001522 ! hypobranchial cartilage relationship: end ZFS:0000044 ! adult @@ -17878,7 +17877,7 @@ id: ZFA:0001525 name: hypobranchial 2 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 2, lateral to copula 1." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "hypobranchial 2 cartilages" EXACT PLURAL [] +synonym: "hypobranchial 2 cartilages" EXACT OMO:0003004 [] xref: TAO:0001525 is_a: ZFA:0001522 ! hypobranchial cartilage relationship: end ZFS:0000044 ! adult @@ -17890,7 +17889,7 @@ id: ZFA:0001526 name: hypobranchial 3 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the anteromedial tip of ceratobranchial 3, lateral to copula 1." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "hypobranchial 3 cartilages" EXACT PLURAL [] +synonym: "hypobranchial 3 cartilages" EXACT OMO:0003004 [] xref: TAO:0001526 is_a: ZFA:0001522 ! hypobranchial cartilage relationship: end ZFS:0000044 ! adult @@ -17902,7 +17901,7 @@ id: ZFA:0001527 name: epibranchial cartilage namespace: zebrafish_anatomy def: "Pharyngeal arch cartilage that is bilaterally paired small rod-like cartilage which articulates laterally with ceratobranchial cartilage or bone." [TAO:curator] -synonym: "epibranchial cartilages" EXACT PLURAL [] +synonym: "epibranchial cartilages" EXACT OMO:0003004 [] xref: TAO:0001527 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! adult @@ -17965,7 +17964,7 @@ id: ZFA:0001533 name: pharyngobranchial cartilage namespace: zebrafish_anatomy def: "Paired cartilages that project medially from the medial tips of epibranchials." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pharyngobranchial cartilages" EXACT PLURAL [] +synonym: "pharyngobranchial cartilages" EXACT OMO:0003004 [] xref: TAO:0001533 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! adult @@ -17976,7 +17975,7 @@ id: ZFA:0001534 name: pharyngobranchial 3 cartilage namespace: zebrafish_anatomy def: "Paired elongate cartilages that lie posteromedial to epibranchial 2 and medial to epibranchial 3." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pharyngobranchial 3 cartilages" EXACT PLURAL [] +synonym: "pharyngobranchial 3 cartilages" EXACT OMO:0003004 [] xref: TAO:0001534 is_a: ZFA:0001533 ! pharyngobranchial cartilage relationship: end ZFS:0000040 ! larval:days 14-20 @@ -17987,7 +17986,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0001535 name: median fin cartilage namespace: zebrafish_anatomy -synonym: "median fin cartilages" EXACT PLURAL [] +synonym: "median fin cartilages" EXACT OMO:0003004 [] xref: TAO:0001535 is_a: ZFA:0001457 ! postcranial axial cartilage relationship: end ZFS:0000044 ! adult @@ -17998,7 +17997,7 @@ id: ZFA:0001536 name: pharyngobranchial 2 cartilage namespace: zebrafish_anatomy def: "Paired disc-like cartilage lying medial to and between the medial tips of epibranchials 1 and 2." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pharyngobranchial 2 cartilages" EXACT PLURAL [] +synonym: "pharyngobranchial 2 cartilages" EXACT OMO:0003004 [] xref: TAO:0001536 is_a: ZFA:0001533 ! pharyngobranchial cartilage relationship: end ZFS:0000041 ! larval:days 21-29 @@ -18010,7 +18009,7 @@ id: ZFA:0001537 name: mesocoracoid cartilage namespace: zebrafish_anatomy def: "Cartilage that develops initially on the medial side of the coraco-scapular cartilage." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "mesocorocoid cartilages" EXACT PLURAL [] +synonym: "mesocorocoid cartilages" EXACT OMO:0003004 [] xref: TAO:0001537 is_a: ZFA:0000257 ! pectoral fin cartilage relationship: end ZFS:0000040 ! larval:days 14-20 @@ -18021,7 +18020,7 @@ id: ZFA:0001538 name: pelvic radial cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the posterior edge of the basipterygium." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pelvic radial cartilages" EXACT PLURAL [] +synonym: "pelvic radial cartilages" EXACT OMO:0003004 [] xref: TAO:0001538 is_a: ZFA:0001459 ! pelvic fin cartilage relationship: end ZFS:0000044 ! adult @@ -18032,7 +18031,7 @@ id: ZFA:0001539 name: basipterygium cartilage namespace: zebrafish_anatomy def: "Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962)." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "basipterygium cartilages" EXACT PLURAL [] +synonym: "basipterygium cartilages" EXACT OMO:0003004 [] xref: TAO:0001539 is_a: ZFA:0001459 ! pelvic fin cartilage relationship: end ZFS:0000044 ! adult @@ -18043,7 +18042,7 @@ id: ZFA:0001540 name: pelvic radial 3 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the posterior and medial edge of the basipterygium." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pelvic radials 3 cartilages" EXACT PLURAL [] +synonym: "pelvic radials 3 cartilages" EXACT OMO:0003004 [] xref: TAO:0001540 is_a: ZFA:0001538 ! pelvic radial cartilage relationship: end ZFS:0000044 ! adult @@ -18054,7 +18053,7 @@ id: ZFA:0001541 name: pelvic radial 2 cartilage namespace: zebrafish_anatomy def: "Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pelvic radials 2 cartilages" EXACT PLURAL [] +synonym: "pelvic radials 2 cartilages" EXACT OMO:0003004 [] xref: TAO:0001541 is_a: ZFA:0001538 ! pelvic radial cartilage relationship: end ZFS:0000044 ! adult @@ -18065,7 +18064,7 @@ id: ZFA:0001542 name: pelvic radial 1 cartilage namespace: zebrafish_anatomy def: "Small cartilage that forms at the posterior and lateral edge of the basipterygium." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "pelvic radials 1 cartilages" EXACT PLURAL [] +synonym: "pelvic radials 1 cartilages" EXACT OMO:0003004 [] xref: TAO:0001542 is_a: ZFA:0001538 ! pelvic radial cartilage relationship: end ZFS:0000044 ! adult @@ -18076,7 +18075,7 @@ id: ZFA:0001543 name: paired fin cartilage namespace: zebrafish_anatomy def: "Cartilage which is part of one of the paired fins." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "paired fin cartilages" EXACT PLURAL [] +synonym: "paired fin cartilages" EXACT OMO:0003004 [] xref: TAO:0001543 is_a: ZFA:0001501 ! cartilage element relationship: end ZFS:0000044 ! adult @@ -18132,7 +18131,7 @@ id: ZFA:0001550 name: caudal fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the caudal fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "caudal fin lepidotrichia" EXACT PLURAL [] +synonym: "caudal fin lepidotrichia" EXACT OMO:0003004 [] synonym: "caudal fin ray" EXACT [] xref: TAO:0001550 is_a: ZFA:0001554 ! lepidotrichium @@ -18145,7 +18144,7 @@ id: ZFA:0001551 name: pectoral fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "pectoral fin lepidotrichia" EXACT PLURAL [] +synonym: "pectoral fin lepidotrichia" EXACT OMO:0003004 [] synonym: "pectoral fin ray" EXACT [] xref: TAO:0001551 is_a: ZFA:0001554 ! lepidotrichium @@ -18158,7 +18157,7 @@ id: ZFA:0001552 name: pelvic fin lepidotrichium namespace: zebrafish_anatomy def: "Lepidotrichium which is part of the pelvic fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "pelvic fin lepidotrichia" EXACT PLURAL [] +synonym: "pelvic fin lepidotrichia" EXACT OMO:0003004 [] synonym: "pelvic fin ray" EXACT [] xref: TAO:0001552 is_a: ZFA:0001554 ! lepidotrichium @@ -18180,7 +18179,7 @@ name: lepidotrichium namespace: zebrafish_anatomy def: "Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. They are bilaterally paired. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials." [ZFIN:ZDB-PUB-031103-13] synonym: "fin ray" EXACT [] -synonym: "lepidotrichia" EXACT PLURAL [] +synonym: "lepidotrichia" EXACT OMO:0003004 [] xref: TAO:0001554 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -18191,7 +18190,7 @@ id: ZFA:0001555 name: epibranchial ganglion namespace: zebrafish_anatomy def: "Cranial ganglion which develops from an epibranchial placode." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "epibranchial ganglia" EXACT PLURAL [] +synonym: "epibranchial ganglia" EXACT OMO:0003004 [] xref: TAO:0001555 is_a: ZFA:0000013 ! cranial ganglion relationship: develops_from ZFA:0001294 ! epibranchial placode @@ -18216,7 +18215,7 @@ name: pronephric glomerulus namespace: zebrafish_anatomy def: "Paired highly vascularized structures of the pronephros which are fused at the midline. Responsible for blood filtration and begins to function between 40 and 48hpf." [ZFIN:ZDB-PUB-000606-4] synonym: "pronephric glomera" EXACT [] -synonym: "pronephric glomeruli" EXACT PLURAL [] +synonym: "pronephric glomeruli" EXACT OMO:0003004 [] synonym: "pronephric glomus " EXACT [] xref: TAO:0001557 is_a: ZFA:0001488 ! multi-tissue structure @@ -18304,7 +18303,7 @@ def: "Oocyte part of stage II ovarian follicle. The stage II oocytes are charac comment: In stage II (cortical alveolus stage), oocytes are distinguished by the appearance of variably sized cortical alveoli and the vitelline envelope becomes prominent, ZDB-PUB-961014-1020. subset: cell_slim synonym: "cortical-alveolar oocyte" EXACT [] -synonym: "oocytes stage II" EXACT PLURAL [] +synonym: "oocytes stage II" EXACT OMO:0003004 [] synonym: "previtellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387] synonym: "Stage 2 oocyte" EXACT [] xref: TAO:0001565 @@ -18320,7 +18319,7 @@ namespace: zebrafish_anatomy def: "Oocyte part of stage III ovarian follicle. Stage III oocytes contain internal vitellus droplets and peripheral yolk vesicles." [GOC:CVS, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387] comment: In stage III (vitellogenesis), yolk proteins appear in oocytes and yolk bodies with crystalline yolk accrue during this major growth stage. Oocytes develop the capacity to respond in vitro to the steroid 17, 20-dihydroxy-4-pregnen-3-one (DHP) by undergoing oocyte maturation ZDB-PUB-961014-1020. subset: cell_slim -synonym: "oocytes stage III" EXACT PLURAL [] +synonym: "oocytes stage III" EXACT OMO:0003004 [] synonym: "postvitellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387] synonym: "Stage 3 oocyte" EXACT [] synonym: "vitellogenic oocytes" EXACT [] @@ -18337,7 +18336,7 @@ namespace: zebrafish_anatomy def: "Oocyte part of stage I ovarian follicle. Stage I oocytes are basophilic, and have relatively large nuclei." [GOC:cvs, GOC:mh, ORCiD:0000-0001-9114-8737, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-140513-387] comment: Oocytes reside in nests with other oocytes (Stage IA) and then within a definitive follicle (Stage IB), where they greatly increase in size ZDB-PUB-961014-1020. subset: cell_slim -synonym: "oocytes stage I" EXACT PLURAL [] +synonym: "oocytes stage I" EXACT OMO:0003004 [] synonym: "previtellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387] synonym: "primary oocyte" EXACT [] synonym: "Stage 1 oocyte" EXACT [] @@ -18355,7 +18354,7 @@ def: "Oocyte part of stage IV ovarian follicle. Stage IV oocytes are large and f comment: In stage IV (oocyte maturation), oocytes increase slightly in size, become translucent, and their yolk becomes non-crystalline as they undergo final meiotic maturation in vivo (and in response to DHP in vitro). ZDB-PUB-961014-1020. subset: cell_slim synonym: "mature oocytes" EXACT [] -synonym: "oocytes stage IV" EXACT PLURAL [] +synonym: "oocytes stage IV" EXACT OMO:0003004 [] synonym: "postvitellogenic oocyte" RELATED [ZFIN:ZDB-PUB-140513-387] synonym: "Stage 4 oocyte" EXACT [] xref: TAO:0001568 @@ -18399,7 +18398,7 @@ id: ZFA:0001571 name: postovulatory follicle namespace: zebrafish_anatomy def: "A follicle that has undergone ovulation and no longer contains an oocyte." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] -synonym: "postovulatory follicles" EXACT PLURAL [] +synonym: "postovulatory follicles" EXACT OMO:0003004 [] xref: TAO:0001571 is_a: ZFA:0001110 ! ovarian follicle relationship: end ZFS:0000044 ! adult @@ -18423,7 +18422,7 @@ id: ZFA:0001573 name: trunk ganglion namespace: zebrafish_anatomy def: "Ganglion which is located in the trunk." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "trunk ganglia" EXACT PLURAL [] +synonym: "trunk ganglia" EXACT OMO:0003004 [] xref: TAO:0001573 is_a: ZFA:0000190 ! ganglion relationship: end ZFS:0000044 ! adult @@ -18465,7 +18464,7 @@ id: ZFA:0001577 name: premaxilla ascending process namespace: zebrafish_anatomy def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "premaxilla ascending processes" EXACT PLURAL [] +synonym: "premaxilla ascending processes" EXACT OMO:0003004 [] xref: TAO:0001577 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -18477,7 +18476,7 @@ id: ZFA:0001578 name: anterior dorsomedial process of autopalatine namespace: zebrafish_anatomy def: "In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts." [GOC:mh, GOC:ymb, ORCiD:0000-0001-9114-8737, ORCiD:0000-0002-9900-7880] -synonym: "anterior dorsomedial process of autopalatines" EXACT PLURAL [] +synonym: "anterior dorsomedial process of autopalatines" EXACT OMO:0003004 [] xref: TAO:0001578 is_a: ZFA:0001637 ! bony projection relationship: end ZFS:0000044 ! adult @@ -18523,7 +18522,7 @@ id: ZFA:0001582 name: non-Weberian precaudal vertebra namespace: zebrafish_anatomy def: "Precaudal vertebra that is not a Weberian vertebra. Vertebra 5 through 14." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "non-Weberian precaudal vertebrae" EXACT PLURAL [] +synonym: "non-Weberian precaudal vertebrae" EXACT OMO:0003004 [] xref: TAO:0001582 is_a: ZFA:0000263 ! precaudal vertebra relationship: end ZFS:0000044 ! adult @@ -18570,7 +18569,7 @@ id: ZFA:0001586 name: pectoral fin radial namespace: zebrafish_anatomy def: "Radial which develops from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle." [TAO:curator] -synonym: "pectoral fin radials" EXACT PLURAL [] +synonym: "pectoral fin radials" EXACT OMO:0003004 [] xref: TAO:0001586 is_a: ZFA:0000271 ! radial relationship: develops_from ZFA:0001456 ! pectoral fin endoskeletal disc @@ -18593,7 +18592,7 @@ id: ZFA:0001588 name: pectoral fin distal radial namespace: zebrafish_anatomy def: "Pectoral fin radial, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial is paired." [TAO:curator] -synonym: "pectoral fin distal radials" EXACT PLURAL [] +synonym: "pectoral fin distal radials" EXACT OMO:0003004 [] xref: TAO:0001588 is_a: ZFA:0001586 ! pectoral fin radial relationship: end ZFS:0000044 ! adult @@ -18604,7 +18603,7 @@ id: ZFA:0001589 name: propterygium namespace: zebrafish_anatomy def: "The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula." [TAO:Curator] -synonym: "propterygia" EXACT PLURAL [] +synonym: "propterygia" EXACT OMO:0003004 [] xref: TAO:0001589 is_a: ZFA:0001588 ! pectoral fin distal radial relationship: end ZFS:0000044 ! adult @@ -18615,7 +18614,7 @@ id: ZFA:0001590 name: dermal bone namespace: zebrafish_anatomy def: "Intramembranous bone that forms superficially in the organism. Dermal bones develop from the direct differentiation of mesenchymal cells into osteoblasts." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-120529-44] -synonym: "dermal bones" EXACT PLURAL [] +synonym: "dermal bones" EXACT OMO:0003004 [] xref: TAO:0001590 is_a: ZFA:0001635 ! intramembranous bone relationship: end ZFS:0000044 ! adult @@ -18626,7 +18625,7 @@ id: ZFA:0001591 name: endochondral bone namespace: zebrafish_anatomy def: "Replacement bone that forms within cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "endochondral bones" EXACT PLURAL [] +synonym: "endochondral bones" EXACT OMO:0003004 [] xref: TAO:0001591 is_a: ZFA:0001693 ! chondral bone is_a: ZFA:0005620 ! endochondral element @@ -18652,7 +18651,7 @@ id: ZFA:0001593 name: quadrate ventral process namespace: zebrafish_anatomy def: "An endochondral bone that is the ventral, posteriorly-oriented bony extension of the quadrate." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "quadrate ventral processes" EXACT PLURAL [] +synonym: "quadrate ventral processes" EXACT OMO:0003004 [] xref: TAO:0000224 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! adult @@ -18696,7 +18695,7 @@ id: ZFA:0001596 name: joint namespace: zebrafish_anatomy def: "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "joints" EXACT PLURAL [] +synonym: "joints" EXACT OMO:0003004 [] xref: TAO:0000367 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! adult @@ -18708,7 +18707,7 @@ id: ZFA:0001597 name: exoccipital posteroventral region namespace: zebrafish_anatomy def: "Endochondral bone which is the posteroventral region of the exoccipital bone." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "exoccipitals posteroventral regions" EXACT PLURAL [] +synonym: "exoccipitals posteroventral regions" EXACT OMO:0003004 [] xref: TAO:0000348 is_a: ZFA:0001591 ! endochondral bone relationship: end ZFS:0000044 ! adult @@ -18901,9 +18900,9 @@ namespace: zebrafish_anatomy alt_id: ZFA:0000515 alt_id: ZFA:0000625 synonym: "branchial arch" EXACT [] -synonym: "branchial arches" EXACT PLURAL [] +synonym: "branchial arches" EXACT OMO:0003004 [] synonym: "branchial bar" EXACT [] -synonym: "branchial bars" EXACT PLURAL [] +synonym: "branchial bars" EXACT OMO:0003004 [] synonym: "gill arch" EXACT [] synonym: "gill arches 1-5" EXACT [] synonym: "visceral arches 3-7" EXACT [] @@ -18976,7 +18975,7 @@ name: optic fiber layer namespace: zebrafish_anatomy def: "Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve." [GOC:mh, ORCiD:0000-0001-9114-8737, ZFIN:ZDB-PUB-000126-5] synonym: "nerve fiber layer" EXACT [] -synonym: "optic fiber layers" EXACT PLURAL [] +synonym: "optic fiber layers" EXACT OMO:0003004 [] xref: TAO:0002212 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -19000,7 +18999,7 @@ id: ZFA:0001621 name: pronephric proximal straight tubule namespace: zebrafish_anatomy def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule." [ZFIN:ZDB-PUB-071029-9] -synonym: "proximal straight tubules" EXACT PLURAL [] +synonym: "proximal straight tubules" EXACT OMO:0003004 [] xref: TAO:0002239 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! larval:days 7-13 @@ -19012,7 +19011,7 @@ id: ZFA:0001622 name: pronephric distal early tubule namespace: zebrafish_anatomy def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal straight tubule." [ZFIN:ZDB-PUB-071029-9] -synonym: "pronephric distal early tubules" EXACT PLURAL [] +synonym: "pronephric distal early tubules" EXACT OMO:0003004 [] xref: TAO:0002236 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! larval:days 7-13 @@ -19024,7 +19023,7 @@ id: ZFA:0001623 name: posterior pronephric duct namespace: zebrafish_anatomy def: "Most posterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which ends at the cloacal chamber at the pronephric duct opening." [ZFIN:ZDB-PUB-071029-9] -synonym: "posterior pronephric ducts" EXACT PLURAL [] +synonym: "posterior pronephric ducts" EXACT OMO:0003004 [] xref: TAO:0002225 is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! larval:days 7-13 @@ -19036,7 +19035,7 @@ id: ZFA:0001624 name: pronephric distal late tubule namespace: zebrafish_anatomy def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the distal early tubule." [ZFIN:ZDB-PUB-071029-9] -synonym: "distal late tubules" EXACT PLURAL [] +synonym: "distal late tubules" EXACT OMO:0003004 [] is_a: ZFA:0005171 ! duct relationship: end ZFS:0000039 ! larval:days 7-13 relationship: part_of ZFA:0000150 ! pronephric duct @@ -19047,7 +19046,7 @@ id: ZFA:0001625 name: optic nerve head namespace: zebrafish_anatomy def: "Portion of cranial nerve II where large fascicles of axons from the optic fiber layer come together prior to leaving the eye." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "optic nerve heads" EXACT PLURAL [] +synonym: "optic nerve heads" EXACT OMO:0003004 [] xref: TAO:0002213 is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! adult @@ -19070,7 +19069,7 @@ id: ZFA:0001627 name: lagenar capsule namespace: zebrafish_anatomy def: "Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "lagenar capsules" EXACT PLURAL [] +synonym: "lagenar capsules" EXACT OMO:0003004 [] xref: TAO:0001620 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! adult @@ -19081,7 +19080,7 @@ id: ZFA:0001628 name: replacement bone namespace: zebrafish_anatomy def: "Bone that forms as a replacement of another structural tissue." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "replacement bones" EXACT PLURAL [] +synonym: "replacement bones" EXACT OMO:0003004 [] xref: TAO:0001637 is_a: ZFA:0001514 ! bone element is_a: ZFA:0005624 ! replacement element @@ -19093,7 +19092,7 @@ id: ZFA:0001629 name: perichordal bone namespace: zebrafish_anatomy def: "Replacement bone that forms within the connective tissue surrounding the notochord." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "perichordal bones" EXACT PLURAL [] +synonym: "perichordal bones" EXACT OMO:0003004 [] xref: TAO:0001639 is_a: ZFA:0001628 ! replacement bone relationship: end ZFS:0000044 ! adult @@ -19104,7 +19103,7 @@ id: ZFA:0001630 name: perichondral bone namespace: zebrafish_anatomy def: "Replacement bone that forms within the connective tissue surrounding cartilage." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "perichondral bones" EXACT PLURAL [] +synonym: "perichondral bones" EXACT OMO:0003004 [] xref: TAO:0001638 is_a: ZFA:0001693 ! chondral bone relationship: develops_from ZFA:0001634 ! perichondrium @@ -19159,7 +19158,7 @@ id: ZFA:0001635 name: intramembranous bone namespace: zebrafish_anatomy def: "Bone that forms directly within mesenchyme, and does not replace other tissues." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "intramembranous bones" EXACT PLURAL [] +synonym: "intramembranous bones" EXACT OMO:0003004 [] xref: TAO:0001644 is_a: ZFA:0001514 ! bone element relationship: develops_from ZFA:0000393 ! mesenchyme @@ -19171,7 +19170,7 @@ id: ZFA:0001636 name: membrane bone namespace: zebrafish_anatomy def: "Intramembranous bone that forms deep in the organism." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "membrane bones" EXACT PLURAL [] +synonym: "membrane bones" EXACT OMO:0003004 [] xref: TAO:0001645 is_a: ZFA:0001635 ! intramembranous bone relationship: end ZFS:0000044 ! adult @@ -19182,7 +19181,7 @@ id: ZFA:0001637 name: bony projection namespace: zebrafish_anatomy def: "Portion of connective tissue that is an extension of a bone." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "bony projections" EXACT PLURAL [] +synonym: "bony projections" EXACT OMO:0003004 [] synonym: "process" EXACT [TAO:0001834] xref: TAO:0001646 xref: TAO:0001834 @@ -19209,7 +19208,7 @@ id: ZFA:0001639 name: vascular endothelium namespace: zebrafish_anatomy def: "Simple squamous epithelium which lines blood and lymphatic vessels and the heart." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "endothelia" EXACT PLURAL [] +synonym: "endothelia" EXACT OMO:0003004 [] xref: TAO:0002171 is_a: ZFA:0001498 ! simple squamous epithelium relationship: end ZFS:0000044 ! adult @@ -19244,7 +19243,7 @@ id: ZFA:0001642 name: tooth row namespace: zebrafish_anatomy def: "Anatomical cluster consisting of adjacent teeth constituting a row." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "tooth rows" EXACT PLURAL [] +synonym: "tooth rows" EXACT OMO:0003004 [] xref: TAO:0001667 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! adult @@ -19256,7 +19255,7 @@ name: anatomical space namespace: zebrafish_anatomy def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [GOC:mh, ORCiD:0000-0001-9114-8737] comment: Part_of parents of these terms should be changed to be located_in rather then part_of when we get the appropriate relation. -synonym: "anatomical spaces" EXACT PLURAL [] +synonym: "anatomical spaces" EXACT OMO:0003004 [] xref: CARO:0000005 xref: TAO:0001668 is_a: ZFA:0100000 ! zebrafish anatomical entity @@ -19268,7 +19267,7 @@ id: ZFA:0001644 name: articular cartilage namespace: zebrafish_anatomy def: "Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] -synonym: "articular cartilages" EXACT PLURAL [] +synonym: "articular cartilages" EXACT OMO:0003004 [] xref: TAO:0001670 is_a: ZFA:0001460 ! pharyngeal arch cartilage relationship: end ZFS:0000044 ! adult @@ -19279,7 +19278,7 @@ id: ZFA:0001645 name: angular bone namespace: zebrafish_anatomy def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [TAO:curator] -synonym: "angular bones" EXACT PLURAL [] +synonym: "angular bones" EXACT OMO:0003004 [] xref: TAO:0001669 is_a: ZFA:0001590 ! dermal bone relationship: end ZFS:0000044 ! adult @@ -19291,7 +19290,7 @@ name: anal fin radial namespace: zebrafish_anatomy def: "Internal skeletal supports of the anal fin." [TAO:curator] synonym: "anal fin pterygiophores" RELATED [] -synonym: "anal fin radials" EXACT PLURAL [] +synonym: "anal fin radials" EXACT OMO:0003004 [] xref: TAO:0001671 is_a: ZFA:0000271 ! radial relationship: end ZFS:0000044 ! adult @@ -19303,7 +19302,7 @@ name: dorsal fin radial namespace: zebrafish_anatomy def: "Internal skeletal supports of the dorsal fin." [TAO:curator] synonym: "dorsal fin pterygiophore " RELATED [] -synonym: "dorsal fin radials" EXACT PLURAL [] +synonym: "dorsal fin radials" EXACT OMO:0003004 [] xref: TAO:0001672 is_a: ZFA:0000271 ! radial relationship: end ZFS:0000044 ! adult @@ -19901,7 +19900,7 @@ name: octaval nerve motor nucleus namespace: zebrafish_anatomy def: "Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-061229-17] synonym: "cranial nerve VIII motor nucleus" EXACT [] -synonym: "octaval nerve motor nuclei" EXACT PLURAL [] +synonym: "octaval nerve motor nuclei" EXACT OMO:0003004 [] synonym: "OLe" EXACT [] xref: TAO:0002174 is_a: ZFA:0001658 ! hindbrain nucleus @@ -20000,7 +19999,7 @@ name: scale primordium namespace: zebrafish_anatomy def: "A portion of tissue that gives rise to the scale. At the initial stages the primordium is composed of an accumulation of fibroblast below the basil epidermis. As the primordium develops the epidermis over the fibroblast alters: the basal epidermal cells become cuboidal and narrow, the collagen matrix remodels and the hemidesmosomes disappear." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-081008-12] synonym: "scale placode" RELATED [] -synonym: "scale primordia " EXACT PLURAL [] +synonym: "scale primordia " EXACT OMO:0003004 [] xref: TAO:0002242 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000043 ! juvenile:days 45-89 @@ -20053,7 +20052,7 @@ id: ZFA:0001708 name: cerebellar white matter namespace: zebrafish_anatomy def: "CNS white matter that is part of the cerebellum." [GOC:mh, ORCiD:0000-0001-9114-8737] -synonym: "cerebellar tracts/commissures" EXACT PLURAL [] +synonym: "cerebellar tracts/commissures" EXACT OMO:0003004 [] xref: TAO:0002183 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! adult @@ -20080,7 +20079,7 @@ id: ZFA:0001710 name: mossy fiber namespace: zebrafish_anatomy def: "Portion of tissue that consists of afferent axons from the spinal cord, sensory medullary nuclei, reticular nuclei and dorsal tegmental nuclei into the corpus cerebelli and valvula cerebelli, where they synapse within the granule cell layer." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] -synonym: "mossy fibers" EXACT PLURAL [] +synonym: "mossy fibers" EXACT OMO:0003004 [] xref: TAO:0002210 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -20095,7 +20094,7 @@ id: ZFA:0001711 name: climbing fiber namespace: zebrafish_anatomy def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] -synonym: "climbing fibers" EXACT PLURAL [] +synonym: "climbing fibers" EXACT OMO:0003004 [] xref: TAO:0002185 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -20124,7 +20123,7 @@ id: ZFA:0001713 name: parallel fiber namespace: zebrafish_anatomy def: "Portion of tissue that consists of axons of cerebellar granule cells that synapse onto Purkinje cell dendrites." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] -synonym: "parallel fibers" EXACT PLURAL [] +synonym: "parallel fibers" EXACT OMO:0003004 [] xref: TAO:0002218 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -20351,8 +20350,8 @@ id: ZFA:0005004 name: aortic arch namespace: zebrafish_anatomy def: "Artery that is part of the pharyngeal arches." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] -synonym: "aortic arches" EXACT PLURAL [] -synonym: "branchial aortic arches " EXACT PLURAL [ZFIN:ZDB-PUB-080512-6] +synonym: "aortic arches" EXACT OMO:0003004 [] +synonym: "branchial aortic arches " EXACT OMO:0003004 [ZFIN:ZDB-PUB-080512-6] xref: TAO:0005004 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! adult @@ -20441,7 +20440,7 @@ id: ZFA:0005011 name: pseudobranchial artery namespace: zebrafish_anatomy def: "A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] -synonym: "pseudobranchial arteries" EXACT PLURAL [] +synonym: "pseudobranchial arteries" EXACT OMO:0003004 [] xref: TAO:0005011 is_a: ZFA:0000005 ! artery relationship: develops_from ZFA:0005005 ! aortic arch 1 @@ -20454,7 +20453,7 @@ name: afferent filamental artery namespace: zebrafish_anatomy def: "Artery that enters the gill filament." [GOC:cvs, ORCiD:0000-0002-2244-7917] synonym: "AFA" EXACT [] -synonym: "afferent filamental arteries" EXACT PLURAL [] +synonym: "afferent filamental arteries" EXACT OMO:0003004 [] xref: TAO:0005012 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! adult @@ -20480,7 +20479,7 @@ name: recurrent branch afferent branchial artery namespace: zebrafish_anatomy def: "The anteroventral proceeding branch of the afferent branchial artery." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] synonym: "RCB" EXACT [] -synonym: "recurrent branch afferent branchial arteries" EXACT PLURAL [] +synonym: "recurrent branch afferent branchial arteries" EXACT OMO:0003004 [] xref: TAO:0005014 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! adult @@ -20492,7 +20491,7 @@ id: ZFA:0005015 name: afferent lamellar arteriole namespace: zebrafish_anatomy def: "Arterioles which take blood from the afferent filamental arteries to the gill lamella." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "afferent lamellar arterioles" EXACT PLURAL [] +synonym: "afferent lamellar arterioles" EXACT OMO:0003004 [] synonym: "AFL" EXACT [] xref: TAO:0005015 is_a: ZFA:0005255 ! arteriole @@ -20543,7 +20542,7 @@ id: ZFA:0005019 name: efferent lamellar arteriole namespace: zebrafish_anatomy def: "Arterioles which take blood from the gill lamella to the efferent filamental arteries." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "efferent lamellar arterioles" EXACT PLURAL [] +synonym: "efferent lamellar arterioles" EXACT OMO:0003004 [] synonym: "ELA" EXACT [] xref: TAO:0005019 is_a: ZFA:0005255 ! arteriole @@ -20724,7 +20723,7 @@ id: ZFA:0005033 name: vertebral artery namespace: zebrafish_anatomy def: "Is an pair of arteries that form from the intersegmental vessels at the level of the base of the spinal cord, adjacent to the myotome." [ZFIN:ZDB-PUB-010205-5] -synonym: "vertebral arteries" EXACT PLURAL [] +synonym: "vertebral arteries" EXACT OMO:0003004 [] xref: TAO:0005033 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! unknown @@ -20786,7 +20785,7 @@ id: ZFA:0005038 name: supraintestinal vein namespace: zebrafish_anatomy synonym: "" RELATED [] -synonym: "supraintestinal veins" EXACT PLURAL [] +synonym: "supraintestinal veins" EXACT OMO:0003004 [] xref: TAO:0005038 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000000 ! unknown @@ -20855,7 +20854,7 @@ id: ZFA:0005044 name: optic artery namespace: zebrafish_anatomy def: "The artery that carries blood to the eye. It branches from the primitive internal carotid artery and enters the eye ventrally through the optic fissure." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] -synonym: "optic arteries" EXACT PLURAL [] +synonym: "optic arteries" EXACT OMO:0003004 [] xref: TAO:0005044 is_a: ZFA:0000005 ! artery is_a: ZFA:0007057 ! ocular blood vessel @@ -20867,7 +20866,7 @@ id: ZFA:0005045 name: hyaloid artery namespace: zebrafish_anatomy def: "Artery that is internal to the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] -synonym: "hyaloid arteries" EXACT PLURAL [] +synonym: "hyaloid arteries" EXACT OMO:0003004 [] xref: TAO:0005045 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! adult @@ -20880,7 +20879,7 @@ name: hyaloid vessel namespace: zebrafish_anatomy def: "Vessels that are associated with the posterior region of the lens." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] synonym: "hyaloid vasculature" RELATED [] -synonym: "hyaloid vessels" EXACT PLURAL [] +synonym: "hyaloid vessels" EXACT OMO:0003004 [] xref: TAO:0005046 is_a: ZFA:0007057 ! ocular blood vessel relationship: end ZFS:0000044 ! adult @@ -20891,7 +20890,7 @@ id: ZFA:0005047 name: hyaloid vein namespace: zebrafish_anatomy def: "Vein internal to the eye." [ZFIN:ZDB-PUB-010205-5] -synonym: "hyaloid veins" EXACT PLURAL [] +synonym: "hyaloid veins" EXACT OMO:0003004 [] xref: TAO:0005047 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! adult @@ -21108,7 +21107,7 @@ id: ZFA:0005065 name: heart valve namespace: zebrafish_anatomy def: "Multi-tissue structure composed of leaflets that separate parts of the heart, preventing blood backflow." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] -synonym: "heart valves" EXACT PLURAL [] +synonym: "heart valves" EXACT OMO:0003004 [] xref: TAO:0005065 is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -21315,7 +21314,7 @@ id: ZFA:0005082 name: dorsal branch nasal ciliary artery namespace: zebrafish_anatomy def: "Branch of the nasal ciliary artery (NCA) that splits off of the NCA near the lens and forms the dorsal ciliary vein." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] -synonym: "dorsal branch nasal ciliary arteries" EXACT PLURAL [] +synonym: "dorsal branch nasal ciliary arteries" EXACT OMO:0003004 [] xref: TAO:0005082 is_a: ZFA:0000005 ! artery is_a: ZFA:0007057 ! ocular blood vessel @@ -21339,7 +21338,7 @@ id: ZFA:0005084 name: metencephalic artery namespace: zebrafish_anatomy def: "These arteries branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-010205-5] -synonym: "metencephalic arteries" EXACT PLURAL [] +synonym: "metencephalic arteries" EXACT OMO:0003004 [] xref: TAO:0005084 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000000 ! unknown @@ -21423,7 +21422,7 @@ id: ZFA:0005091 name: hepatic sinusoid namespace: zebrafish_anatomy def: "Wide thin-walled blood vessels in the liver. The terminal branches of the hepatic portal vein and hepatic artery empty into the sinusoids where the blood mixes. In mammals they have neither venous or arterial markers. Sinusoids are scattered throughout the parenchyma and appear small and round." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090422-17] -synonym: "hepatic sinusoids" EXACT PLURAL [] +synonym: "hepatic sinusoids" EXACT OMO:0003004 [] xref: TAO:0005091 is_a: ZFA:0005314 ! blood vessel relationship: develops_from ZFA:0005035 ! subintestinal vein @@ -21508,7 +21507,7 @@ id: ZFA:0005098 name: central ray artery namespace: zebrafish_anatomy def: "Artery that is positioned in the intraray mesenchyme between the hemirays of the lepidotrichia." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031119-3] -synonym: "central ray arteries" EXACT PLURAL [] +synonym: "central ray arteries" EXACT OMO:0003004 [] xref: TAO:0005098 is_a: ZFA:0000005 ! artery relationship: end ZFS:0000044 ! adult @@ -21520,7 +21519,7 @@ id: ZFA:0005099 name: ray vein namespace: zebrafish_anatomy def: "Vein that flanks and is just lateral to the fin ray, in the interray mesenchyme." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-031119-3] -synonym: "ray veins" EXACT PLURAL [] +synonym: "ray veins" EXACT OMO:0003004 [] xref: TAO:0005099 is_a: ZFA:0000082 ! vein relationship: end ZFS:0000044 ! adult @@ -21532,7 +21531,7 @@ id: ZFA:0005100 name: intervessel commissure namespace: zebrafish_anatomy def: "Vessels that travel between artery and veins or vein and vein in a single ray." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "intervessel comisures" EXACT PLURAL [] +synonym: "intervessel comisures" EXACT OMO:0003004 [] xref: TAO:0005100 is_a: ZFA:0005299 ! fin blood vessel relationship: end ZFS:0000044 ! adult @@ -21543,7 +21542,7 @@ id: ZFA:0005101 name: interray vessel namespace: zebrafish_anatomy def: "Vessels that travel between veins in adjacent rays." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "interray vessels" EXACT PLURAL [] +synonym: "interray vessels" EXACT OMO:0003004 [] xref: TAO:0005101 is_a: ZFA:0005299 ! fin blood vessel relationship: end ZFS:0000044 ! adult @@ -21585,7 +21584,7 @@ name: lymph vasculature namespace: zebrafish_anatomy def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. The walls are mostly composed of single layer of irregularly shaped endothelial cells. Lymphatic vessels are usually classified as either superficial or deep." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-120529-43, ZFIN:ZDB-PUB-130218-10] synonym: "lymph vessel" RELATED [] -synonym: "lymph vessels" EXACT PLURAL [] +synonym: "lymph vessels" EXACT OMO:0003004 [] xref: TAO:0005105 is_a: ZFA:0005249 ! vasculature relationship: end ZFS:0000044 ! adult @@ -21653,7 +21652,7 @@ id: ZFA:0005111 name: medial forebrain bundle namespace: zebrafish_anatomy def: "Tract that originates in the telencephalon lies medial to the lateral forebrain bundle and extends into the diencephalon approaching the posterior tuberal nucleus. In embryos the tract connects cells in the ventral olfactory bulb to those in the septal area." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-071219-12, ZFIN:ZDB-PUB-961014-1280] -synonym: "medial forebrain bundles" EXACT PLURAL [] +synonym: "medial forebrain bundles" EXACT OMO:0003004 [] xref: TAO:0005111 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! adult @@ -21664,7 +21663,7 @@ id: ZFA:0005112 name: dorsal lateral line namespace: zebrafish_anatomy def: "One of eight distinct lateral lines in the 4-day larva. The dorsal line runs along the dorsal side of the body and never extends beyond the dorsal fin. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-070907-34] -synonym: "dorsal lateral lines" EXACT PLURAL [] +synonym: "dorsal lateral lines" EXACT OMO:0003004 [] xref: TAO:0005112 is_a: ZFA:0001469 ! lateral line relationship: end ZFS:0000044 ! adult @@ -21698,7 +21697,7 @@ id: ZFA:0005115 name: primary posterior lateral line primordium namespace: zebrafish_anatomy def: "Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-040319-12, ZFIN:ZDB-PUB-040916-1] -synonym: "primary posterior lateral line primordia" EXACT PLURAL [] +synonym: "primary posterior lateral line primordia" EXACT OMO:0003004 [] synonym: "primI" EXACT [] xref: TAO:0005115 is_a: ZFA:0001157 ! posterior lateral line primordium @@ -21711,7 +21710,7 @@ id: ZFA:0005116 name: secondary posterior lateral line primordium namespace: zebrafish_anatomy def: "Second lateral line primordium. These primordia move at 0.2 somites/hour and deposit neuromasts that are polarized in a dorso-ventral direction." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-040319-12, ZFIN:ZDB-PUB-040916-1] -synonym: "secondary posterior lateral line primordia" EXACT PLURAL [] +synonym: "secondary posterior lateral line primordia" EXACT OMO:0003004 [] xref: TAO:0005116 is_a: ZFA:0001157 ! posterior lateral line primordium relationship: end ZFS:0000000 ! unknown @@ -21722,7 +21721,7 @@ id: ZFA:0005117 name: anterior lateral line primordium namespace: zebrafish_anatomy def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "anterior lateral line primordia" EXACT PLURAL [] +synonym: "anterior lateral line primordia" EXACT OMO:0003004 [] xref: TAO:0005117 is_a: ZFA:0000228 ! lateral line primordium relationship: end ZFS:0000000 ! unknown @@ -21734,7 +21733,7 @@ id: ZFA:0005118 name: middle lateral line primordium namespace: zebrafish_anatomy def: "A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "middle lateral line primordia" EXACT PLURAL [] +synonym: "middle lateral line primordia" EXACT OMO:0003004 [] xref: TAO:0005118 is_a: ZFA:0000228 ! lateral line primordium relationship: end ZFS:0000000 ! unknown @@ -21746,7 +21745,7 @@ id: ZFA:0005119 name: barbel primordium namespace: zebrafish_anatomy def: "A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] -synonym: "barbel primordia" EXACT PLURAL [] +synonym: "barbel primordia" EXACT OMO:0003004 [] xref: TAO:0005119 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000043 ! juvenile:days 45-89 @@ -21767,7 +21766,7 @@ id: ZFA:0005121 name: middle lateral line placode namespace: zebrafish_anatomy def: "Dorsolateral placode that gives rise to the middle lateral line." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "middle lateral line placodes" EXACT PLURAL [] +synonym: "middle lateral line placodes" EXACT OMO:0003004 [] xref: TAO:0005121 is_a: ZFA:0001310 ! dorsolateral placode relationship: end ZFS:0000033 ! hatching:long-pec @@ -21815,7 +21814,7 @@ id: ZFA:0005125 name: intestinal villus namespace: zebrafish_anatomy def: "The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine." [ZFIN:ZDB-PUB-050209-3] -synonym: "intestinal villi" EXACT PLURAL [] +synonym: "intestinal villi" EXACT OMO:0003004 [] xref: TAO:0005125 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -21915,7 +21914,7 @@ id: ZFA:0005134 name: dental epithelium namespace: zebrafish_anatomy def: "Epithelium that is part of a developing tooth or dental organ." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "dental epithelia" EXACT PLURAL [] +synonym: "dental epithelia" EXACT OMO:0003004 [] xref: TAO:0005134 is_a: ZFA:0001486 ! epithelium relationship: develops_from ZFA:0001174 ! pharyngeal epithelium @@ -22036,7 +22035,7 @@ id: ZFA:0005144 name: ampullary nerve namespace: zebrafish_anatomy def: "Nerve that is a branch of cranial nerve VIII and innervates the cristae ampullaris." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "ampullary nerves" EXACT PLURAL [] +synonym: "ampullary nerves" EXACT OMO:0003004 [] xref: TAO:0005144 is_a: ZFA:0007009 ! nerve relationship: end ZFS:0000044 ! adult @@ -22048,7 +22047,7 @@ id: ZFA:0005145 name: muscle namespace: zebrafish_anatomy def: "Portion of tissue composed of contractile fibers." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "muscles" EXACT PLURAL [] +synonym: "muscles" EXACT OMO:0003004 [] xref: TAO:0005145 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -22071,7 +22070,7 @@ id: ZFA:0005147 name: regenerating tissue namespace: zebrafish_anatomy def: "A portion of tissue that is regrowing after damage or amputation." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "regenerating tissues" EXACT PLURAL [] +synonym: "regenerating tissues" EXACT OMO:0003004 [] xref: TAO:0005147 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -22082,7 +22081,7 @@ id: ZFA:0005148 name: apical epidermal cap namespace: zebrafish_anatomy def: "Part of the regeneration epithelium closest to the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "apical epidermal caps" EXACT PLURAL [] +synonym: "apical epidermal caps" EXACT OMO:0003004 [] xref: TAO:0005148 is_a: ZFA:0005147 ! regenerating tissue relationship: end ZFS:0000044 ! adult @@ -22094,7 +22093,7 @@ id: ZFA:0005149 name: distal epidermal cap namespace: zebrafish_anatomy def: "Part of regeneration epithelium at the tip of the fin." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "distal epidermal caps" EXACT PLURAL [] +synonym: "distal epidermal caps" EXACT OMO:0003004 [] xref: TAO:0005149 is_a: ZFA:0005147 ! regenerating tissue relationship: end ZFS:0000044 ! adult @@ -22184,7 +22183,7 @@ id: ZFA:0005156 name: fibrous joint namespace: zebrafish_anatomy def: "A joint where fibrous tissue such as ligament connects two calcified tissues." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "syndesmoses" EXACT PLURAL [] +synonym: "syndesmoses" EXACT OMO:0003004 [] synonym: "syndesmosis" EXACT [] xref: TAO:0005156 is_a: ZFA:0001596 ! joint @@ -23402,7 +23401,7 @@ namespace: zebrafish_anatomy def: "Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. KA neurons are the dorsal population of CSF-cNs that originate from pMN. The apical extension of dorsal CSF-cNs is more extended along the border of the central canal than for ventral CSF-cNs. Dorsal CSF-cNs contact V0-v cells and project onto CoPA sensory interneuron and respond to lateral bending of the spinal cord." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-080825-21, ZFIN:ZDB-PUB-170409-2] subset: cell_slim synonym: "dorsal CSF-cN" EXACT [ZFIN:ZDB-PUB-170409-2] -synonym: "dorsal CSF-cNs" EXACT PLURAL [ZFIN:ZDB-PUB-170409-2] +synonym: "dorsal CSF-cNs" EXACT OMO:0003004 [ZFIN:ZDB-PUB-170409-2] synonym: "KA cell" EXACT [] synonym: "KA interneuron" EXACT [ZFIN:ZDB-PUB-041115-5] synonym: "KA neuron" EXACT [ZFIN:ZDB-PUB-980624-10] @@ -23505,7 +23504,7 @@ namespace: zebrafish_anatomy def: "Is a fibroblast that differentiates from the de-differentiated cells of the blastema." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim synonym: "blastemal fibroblast" EXACT [] -synonym: "blastemal fibroblasts" EXACT PLURAL [] +synonym: "blastemal fibroblasts" EXACT OMO:0003004 [] xref: TAO:0005246 is_a: ZFA:0009026 ! fibroblast relationship: end ZFS:0000044 ! adult @@ -24121,7 +24120,7 @@ id: ZFA:0005293 name: distal early tubule namespace: zebrafish_anatomy def: "Portion of the renal tubule which is just posterior to the proximal straight tubule." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "distal early tubules" EXACT PLURAL [] +synonym: "distal early tubules" EXACT OMO:0003004 [] xref: TAO:0005293 is_a: ZFA:0005289 ! renal duct relationship: end ZFS:0000044 ! adult @@ -25343,7 +25342,7 @@ id: ZFA:0005386 name: foramen namespace: zebrafish_anatomy def: "Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves." [TAO:curator] -synonym: "foramina" EXACT PLURAL [] +synonym: "foramina" EXACT OMO:0003004 [] xref: TAO:0001736 is_a: ZFA:0001643 ! anatomical space relationship: end ZFS:0000044 ! adult @@ -25496,7 +25495,7 @@ id: ZFA:0005398 name: anal fin actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium that is part of the anal fin skeleton." [TAO:curator] -synonym: "anal fin actinotricia" EXACT PLURAL [] +synonym: "anal fin actinotricia" EXACT OMO:0003004 [] xref: TAO:0000375 is_a: ZFA:0005435 ! actinotrichium relationship: end ZFS:0000044 ! adult @@ -25749,7 +25748,7 @@ id: ZFA:0005418 name: auditory fenestra namespace: zebrafish_anatomy def: "Opening in the neurocranium to allow communication between the swim bladder and the inner ear." [TAO:curator] -synonym: "auditory fenestrae" EXACT PLURAL [] +synonym: "auditory fenestrae" EXACT OMO:0003004 [] xref: TAO:0002066 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! adult @@ -25822,7 +25821,7 @@ id: ZFA:0005424 name: caudal fin actinotrichium namespace: zebrafish_anatomy def: "Actinotrichium that is part of the caudal fin skeleton." [TAO:curator] -synonym: "caudal fin actinotrichia" EXACT PLURAL [] +synonym: "caudal fin actinotrichia" EXACT OMO:0003004 [] xref: TAO:0000437 is_a: ZFA:0005435 ! actinotrichium relationship: end ZFS:0000044 ! adult @@ -25957,7 +25956,7 @@ id: ZFA:0005435 name: actinotrichium namespace: zebrafish_anatomy def: "Skeletal element which is a slender, horny, flexible, unsegmented fibril which provide structural support to fin folds or fins. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "actinotrichia" EXACT PLURAL [] +synonym: "actinotrichia" EXACT OMO:0003004 [] xref: TAO:0000089 is_a: ZFA:0005494 ! skeletal element relationship: end ZFS:0000044 ! adult @@ -26173,7 +26172,7 @@ id: ZFA:0005453 name: basicapsular fenestra namespace: zebrafish_anatomy def: "Opening in the prootic. The basicapsular fenestra is paired." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "basicapsular fenestrae" EXACT PLURAL [] +synonym: "basicapsular fenestrae" EXACT OMO:0003004 [] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! adult relationship: start ZFS:0000000 ! unknown @@ -26724,7 +26723,7 @@ id: ZFA:0005499 name: circulus namespace: zebrafish_anatomy def: "Fine ridges on surface of scale, often parallel to the circumference of scale." [http://www.briancoad.com/main.asp?page=fishdictionary.htm, TAO:curator] -synonym: "circuli" EXACT PLURAL [] +synonym: "circuli" EXACT OMO:0003004 [] xref: TAO:0002051 is_a: ZFA:0000037 ! anatomical structure relationship: end ZFS:0000044 ! adult @@ -27665,7 +27664,7 @@ id: ZFA:0005573 name: zonule namespace: zebrafish_anatomy def: "Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050701-15] -synonym: "zonules" EXACT PLURAL [] +synonym: "zonules" EXACT OMO:0003004 [] is_a: ZFA:0001487 ! portion of organism substance relationship: develops_from ZFA:0005561 ! vitreous relationship: end ZFS:0000044 ! adult @@ -27691,7 +27690,7 @@ id: ZFA:0005575 name: brain nucleus namespace: zebrafish_anatomy def: "Portion of tissue that are compact accumulations of neurons having roughly similar connections and functions." [GOC:mh, ISBN:0878937420, ORCiD:0000-0001-9114-8737] -synonym: "brain nuclei" EXACT PLURAL [] +synonym: "brain nuclei" EXACT OMO:0003004 [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult relationship: part_of ZFA:0000008 ! brain @@ -28085,7 +28084,7 @@ name: cranial vault namespace: zebrafish_anatomy def: "Anatomical cluster of skeletal elements that forms the roof over the brain." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-060323-12] synonym: "calva" RELATED [] -synonym: "calvaria" EXACT PLURAL [] +synonym: "calvaria" EXACT OMO:0003004 [] synonym: "calvarium" EXACT [] synonym: "skullcap" RELATED [] is_a: ZFA:0001478 ! anatomical cluster @@ -28316,7 +28315,7 @@ id: ZFA:0005625 name: hypophyseal fenestra namespace: zebrafish_anatomy def: "Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra." [ZFIN:ZDB-PUB-961014-192] -synonym: "hypophyseal fenestrae" EXACT PLURAL [] +synonym: "hypophyseal fenestrae" EXACT OMO:0003004 [] xref: TAO:0005269 is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000000 ! unknown @@ -28480,7 +28479,7 @@ name: scapulo-vertebral ligament namespace: zebrafish_anatomy def: "Ligaments that runs from the parapophyses of the anteriormost centrum to the exoccipital. There are two scapulo-vertebral ligaments in zebrafish." [ZFIN:ZDB-PUB-961014-192] synonym: "Baudelot's ligaments" EXACT [] -synonym: "scapulo-vertebral ligaments" EXACT PLURAL [] +synonym: "scapulo-vertebral ligaments" EXACT OMO:0003004 [] is_a: ZFA:0001675 ! ligament relationship: end ZFS:0000044 ! adult relationship: start ZFS:0000000 ! unknown @@ -28641,7 +28640,7 @@ id: ZFA:0005652 name: aponeurosis namespace: zebrafish_anatomy def: "Layers of broad flat tendons." [GOC:cvs, ORCiD:0000-0002-2244-7917] -synonym: "aponeuroses" EXACT PLURAL [] +synonym: "aponeuroses" EXACT OMO:0003004 [] is_a: ZFA:0005647 ! tendon relationship: end ZFS:0000044 ! adult relationship: start ZFS:0000000 ! unknown @@ -28845,7 +28844,7 @@ id: ZFA:0005669 name: lateral protoglomerulus namespace: zebrafish_anatomy def: "Protoglomeruli in the lateral region of the glomerular layer of the olfactory bulb. The neurons composing lateral protoglomeruli respond to amino acid stimuli." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-050617-6, ZFIN:ZDB-PUB-980729-35] -synonym: "lateral protoglomeruli" EXACT PLURAL [] +synonym: "lateral protoglomeruli" EXACT OMO:0003004 [] is_a: ZFA:0005668 ! olfactory bulb protoglomerulus relationship: end ZFS:0000000 ! unknown relationship: part_of ZFA:0005675 ! lateral zone olfactory bulb @@ -30679,7 +30678,7 @@ id: ZFA:0005809 name: pectinate muscle namespace: zebrafish_anatomy def: "Network of heavily branched muscle in the atrium." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-001026-2] -synonym: "pectinate muscles" EXACT PLURAL [] +synonym: "pectinate muscles" EXACT OMO:0003004 [] is_a: ZFA:0005280 ! cardiac muscle relationship: end ZFS:0000044 ! adult relationship: part_of ZFA:0000471 ! atrium @@ -31589,7 +31588,7 @@ id: ZFA:0005879 name: seminiferous tubule namespace: zebrafish_anatomy def: "Tubules formed by the seminiferous epithelium that contains spermatogenic cyst surrounded by somatic support cells, called Sertoli cells. The lumen of he seminiferous tubules connects to the sperm or efferent duct." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-090407-9] -synonym: "seminiferous tubules" EXACT PLURAL [] +synonym: "seminiferous tubules" EXACT OMO:0003004 [] synonym: "sperm duct" BROAD [] is_a: ZFA:0001488 ! multi-tissue structure relationship: end ZFS:0000044 ! adult @@ -31748,7 +31747,7 @@ id: ZFA:0005892 name: lateral occipital foramen namespace: zebrafish_anatomy def: "Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-961014-192] -synonym: "lateral occipital foramina" EXACT PLURAL [ZFIN:ZDB-PUB-961014-192] +synonym: "lateral occipital foramina" EXACT OMO:0003004 [ZFIN:ZDB-PUB-961014-192] is_a: ZFA:0005386 ! foramen relationship: end ZFS:0000044 ! adult relationship: start ZFS:0000000 ! unknown @@ -31847,7 +31846,7 @@ id: ZFA:0005900 name: scale radius namespace: zebrafish_anatomy def: "Grooves on the scale radiating from the focus. Zebrafish have primary radii that start at the focus and extend to the posterior margin of the scale." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180311-2] -synonym: "scale radii" EXACT PLURAL [] +synonym: "scale radii" EXACT OMO:0003004 [] is_a: ZFA:0001690 ! groove relationship: end ZFS:0000044 ! adult relationship: part_of ZFA:0000277 ! scale @@ -32021,7 +32020,7 @@ id: ZFA:0005914 name: argentum namespace: zebrafish_anatomy def: "Iridophore layer of iris composed of a outer layer of regularly tiled iridophores and an inner layer of randomly arranged iridophores. The outer regularly tiled iridophores reflect blue green light. The light reflecting crystals in the iris iridophores are composed of anhydrous Beta-guanine." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFIN:ZDB-PUB-180822-3] -synonym: "argenta " EXACT PLURAL [] +synonym: "argenta " EXACT OMO:0003004 [] synonym: "iridophore layer iris" EXACT [] is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -32657,7 +32656,7 @@ id: ZFA:0007006 name: lip namespace: zebrafish_anatomy def: "Surface structure that is one of the fleshy folds surrounding the opening of the mouth." [GOC:ymb, http://www.medterms.com/script/main/art.asp?articlekey=9458, ORCiD:0000-0002-9900-7880] -synonym: "lips" EXACT PLURAL [] +synonym: "lips" EXACT OMO:0003004 [] xref: TAO:0007006 is_a: ZFA:0000292 ! surface structure relationship: end ZFS:0000044 ! adult @@ -32670,7 +32669,7 @@ name: ventral intermandibularis anterior namespace: zebrafish_anatomy def: "Is a mandibular muscle that attaches to Meckel's cartilage and functions during jaw closing." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-061010-9] synonym: "intermandibularis anterior" EXACT [] -synonym: "ventral intermandibulari anterior" EXACT PLURAL [] +synonym: "ventral intermandibulari anterior" EXACT OMO:0003004 [] xref: TAO:0007008 is_a: ZFA:0005145 ! muscle relationship: develops_from ZFA:0000369 ! intermandibularis @@ -32682,7 +32681,7 @@ id: ZFA:0007009 name: nerve namespace: zebrafish_anatomy def: "A portion of tissue which is a fasciculated group of axons. Many time axons in the nerve are enveloped by the glial cells of the peripheral nervous system, the Schwann cells." [GOC:ymb, ISBN:0878937420, ORCiD:0000-0002-9900-7880] -synonym: "nerves" EXACT PLURAL [] +synonym: "nerves" EXACT OMO:0003004 [] xref: TAO:0007009 is_a: ZFA:0001477 ! portion of tissue relationship: end ZFS:0000044 ! adult @@ -32720,7 +32719,7 @@ name: lateral forebrain bundle namespace: zebrafish_anatomy def: "In the adult bilaterally paired compact tract located lateral to the medial forebrain bundle that extends to the diencephalon. Formed from several fascicles that originate in the precommissural telencephalon and converge rostrocaudally. In the seven day old fish bilaterally paired bundle that runs caudally from the anterior commissure to the forebrain. In the caudal diencephalon the bundle divides into two parts. The thinner part runs more laterally and ventrally, and the thicker part was located more medially and dorsally. Both bundles run in the caudal direction toward the cranial wall of the lateral recess of the diencephalic ventricle, where they apparently exchange some fibers. Then, they continue in the caudal direction, surrounding the lateral recess from the ventral and dorsal side, and meet close to the caudal wall of lateral recess at the level of the commissure of the posterior tuberculum." [GOC:cvs, GOC:ymb, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-051207-17, ZFIN:ZDB-PUB-961014-1280] synonym: "fasciculus lateralis telencephali" EXACT [ZFIN:ZDB-PUB-961014-1280] -synonym: "lateral forebrain bundles" EXACT PLURAL [] +synonym: "lateral forebrain bundles" EXACT OMO:0003004 [] xref: TAO:0007012 is_a: ZFA:0001682 ! white matter relationship: end ZFS:0000044 ! adult @@ -33155,7 +33154,7 @@ name: ventral intermandibularis posterior namespace: zebrafish_anatomy def: "Is a mandibular muscle that attaches Meckel's cartilage to the basihyal cartilage and functions in jaw opening." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2, ZFIN:ZDB-PUB-061010-9] synonym: "intermandibularis posterior" EXACT [] -synonym: "ventral intermandibulari posterior" EXACT PLURAL [] +synonym: "ventral intermandibulari posterior" EXACT OMO:0003004 [] xref: TAO:0007048 is_a: ZFA:0005145 ! muscle relationship: develops_from ZFA:0000369 ! intermandibularis @@ -33178,7 +33177,7 @@ id: ZFA:0007050 name: constrictor dorsalis namespace: zebrafish_anatomy def: "Dorsal subdivision of the putative mandibular muscle plate. Splits into the dilatator operculi and the levator arcus palatini." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-970819-13] -synonym: "constrictors dorsalis" EXACT PLURAL [] +synonym: "constrictors dorsalis" EXACT OMO:0003004 [] xref: TAO:0007050 is_a: ZFA:0000236 ! mandibular muscle relationship: end ZFS:0000035 ! larval:protruding-mouth @@ -33190,7 +33189,7 @@ name: interhyoideus namespace: zebrafish_anatomy def: "Is a ventral paired hyoid muscle that has attachment sites on the basihyal and the posterior end of the ceratohyals and functions in jaw opening." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2] synonym: "interhyal" EXACT [] -synonym: "ventral interhyoidei" EXACT PLURAL [] +synonym: "ventral interhyoidei" EXACT OMO:0003004 [] synonym: "ventral interhyoideus" EXACT [] xref: TAO:0007051 is_a: ZFA:0000521 ! hyoid muscle @@ -33214,7 +33213,7 @@ name: adductor hyomandibulae namespace: zebrafish_anatomy def: "Is a dorsal, paired hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-020703-2] synonym: "dorsal adductor hyomandibulae" EXACT [] -synonym: "dorsal adductors hyomandibulae" EXACT PLURAL [] +synonym: "dorsal adductors hyomandibulae" EXACT OMO:0003004 [] xref: TAO:0007053 is_a: ZFA:0000521 ! hyoid muscle relationship: end ZFS:0000044 ! adult @@ -33298,7 +33297,7 @@ id: ZFA:0007059 name: neurogenic field namespace: zebrafish_anatomy def: "Portion of tissue fated to develop into neurogenic placode." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "neurogenic fields" EXACT PLURAL [] +synonym: "neurogenic fields" EXACT OMO:0003004 [] xref: TAO:0007059 is_a: ZFA:0001477 ! portion of tissue relationship: develops_from ZFA:0007013 ! preplacodal ectoderm @@ -33310,7 +33309,7 @@ id: ZFA:0007060 name: dorsolateral field namespace: zebrafish_anatomy def: "Neurogenic field fated to develop into a dorsolateral placode." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "dorsolateral fields" EXACT PLURAL [] +synonym: "dorsolateral fields" EXACT OMO:0003004 [] xref: TAO:0007060 is_a: ZFA:0007059 ! neurogenic field relationship: end ZFS:0000022 ! gastrula:bud @@ -33321,7 +33320,7 @@ id: ZFA:0007061 name: epibranchial field namespace: zebrafish_anatomy def: "Neurogenic field fated to develop into an epibranchial placode." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "epibranchial fields" EXACT PLURAL [] +synonym: "epibranchial fields" EXACT OMO:0003004 [] xref: TAO:0007061 is_a: ZFA:0007059 ! neurogenic field relationship: end ZFS:0000029 ! pharyngula:prim-5 @@ -33332,7 +33331,7 @@ id: ZFA:0007062 name: olfactory field namespace: zebrafish_anatomy def: "Neurogenic field fated to develop into the olfactory placode." [GOC:ymb, ORCiD:0000-0002-9900-7880] -synonym: "olfactory fields" EXACT PLURAL [] +synonym: "olfactory fields" EXACT OMO:0003004 [] xref: TAO:0007062 is_a: ZFA:0007059 ! neurogenic field relationship: end ZFS:0000025 ! segmentation:10-13 somites @@ -33599,7 +33598,7 @@ name: premigratory neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the premigratory neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "premigratory neural crest cells" EXACT PLURAL [] +synonym: "premigratory neural crest cells" EXACT OMO:0003004 [] xref: CL:0007004 is_a: ZFA:0009165 ! neural crest cell relationship: end ZFS:0000000 ! unknown @@ -33626,7 +33625,7 @@ name: migratory neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the migratory neural crest population. Migratory neural crest cells develop from premigratory neural crest cells and have undergone epithelial to mesenchymal transition and delamination." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "migratory neural crest cells" EXACT PLURAL [] +synonym: "migratory neural crest cells" EXACT OMO:0003004 [] xref: CL:0000333 is_a: ZFA:0009136 ! motile cell relationship: develops_from ZFA:0007084 ! premigratory neural crest cell @@ -33680,7 +33679,7 @@ name: premigratory cranial neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the premigratory cranial neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory cranial neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "premigratory cranial neural crest cells" EXACT PLURAL [] +synonym: "premigratory cranial neural crest cells" EXACT OMO:0003004 [] is_a: ZFA:0007084 ! premigratory neural crest cell is_a: ZFA:0009003 ! cranial neural crest cell relationship: end ZFS:0000024 ! segmentation:5-9 somites @@ -33695,7 +33694,7 @@ name: migratory cranial neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "migratory cranial neural crest cells" EXACT PLURAL [] +synonym: "migratory cranial neural crest cells" EXACT OMO:0003004 [] xref: CL:0000008 is_a: ZFA:0007086 ! migratory neural crest cell relationship: develops_from ZFA:0007090 ! premigratory cranial neural crest cell @@ -33736,7 +33735,7 @@ name: premigratory trunk neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the premigratory trunk neural crest population. Will undergo epithelial to mesenchymal transition and delamination to become part of the migratory trunk neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "premigratory trunk neural crest cells" EXACT PLURAL [] +synonym: "premigratory trunk neural crest cells" EXACT OMO:0003004 [] is_a: ZFA:0007084 ! premigratory neural crest cell is_a: ZFA:0009004 ! trunk neural crest cell relationship: end ZFS:0000030 ! pharyngula:prim-15 @@ -33751,7 +33750,7 @@ name: migratory trunk neural crest cell namespace: zebrafish_anatomy def: "Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "migratory trunk neural crest cells" EXACT PLURAL [] +synonym: "migratory trunk neural crest cells" EXACT OMO:0003004 [] xref: CL:0000011 is_a: ZFA:0007086 ! migratory neural crest cell relationship: develops_from ZFA:0007094 ! premigratory trunk neural crest cell @@ -34037,7 +34036,7 @@ namespace: zebrafish_anatomy def: "Spinal cord interneuron located along the central canal that extends a microvilliated apical process into the cerebrospinal fluid and extends ascending axonal projections ventrally and ipsilaterally. CSF-cNs are GABAergic neurons that express PKD2L1 (TRPP3) channels and have been shown to be chemosensory and mechanosensory, responding to pH and osmolarity changes as well as mechanical stimuli associated with tail bending. CSF-cNs originate from two distinct progenitor domains, p3 and pMN. CSF-cNs project onto caudal primary (CaP motor neurons) and commissural primary ascending (CoPA) sensory interneurons within the escape circuit as well as onto V0-v interneurons within the slow swimming circuit." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-170409-2] subset: cell_slim synonym: "CSF-cN" EXACT [ZFIN:ZDB-PUB-170409-2] -synonym: "CSF-cNs" EXACT PLURAL [ZFIN:ZDB-PUB-170409-2] +synonym: "CSF-cNs" EXACT OMO:0003004 [ZFIN:ZDB-PUB-170409-2] is_a: ZFA:0000778 ! spinal cord interneuron is_a: ZFA:0009120 ! mechanoreceptor cell is_a: ZFA:0009124 ! chemoreceptor cell @@ -34054,7 +34053,7 @@ def: "A cerebrospinal fluid contacting neuron that originates form p3 progenitor subset: cell_slim synonym: "KA 2" RELATED [] synonym: "ventral CSF-cN" EXACT [ZFIN:ZDB-PUB-170409-2] -synonym: "ventral CSF-cNs" EXACT PLURAL [ZFIN:ZDB-PUB-170409-2] +synonym: "ventral CSF-cNs" EXACT OMO:0003004 [ZFIN:ZDB-PUB-170409-2] is_a: ZFA:0007120 ! cerebrospinal fluid contacting neuron relationship: end ZFS:0000044 ! adult relationship: start ZFS:0000023 ! segmentation:1-4 somites @@ -34081,7 +34080,7 @@ name: ionocyte progenitor cell namespace: zebrafish_anatomy def: "A cell that will become an ionocyte. Ionocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC and Tp63 positive." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-190402-19] subset: cell_slim -synonym: "ionocyte progenitor cells" EXACT PLURAL [] +synonym: "ionocyte progenitor cells" EXACT OMO:0003004 [] is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0007122 ! epidermal stem cell relationship: end ZFS:0000044 ! adult @@ -34095,7 +34094,7 @@ name: keratinocyte progenitor cell namespace: zebrafish_anatomy def: "A cell that will become a keratinocyte. Keratinocyte progenitor cells develop from epidermal stem cells in the ventral ectoderm that are DeltaC negative and Tp63 positive." [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-190402-19] subset: cell_slim -synonym: "keratinocyte progenitor cells" EXACT PLURAL [] +synonym: "keratinocyte progenitor cells" EXACT OMO:0003004 [] is_a: ZFA:0009000 ! cell relationship: develops_from ZFA:0007122 ! epidermal stem cell relationship: end ZFS:0000044 ! adult @@ -34122,7 +34121,7 @@ name: cell namespace: zebrafish_anatomy def: "Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:MAH, ORCiD:0000-0001-9114-8737] subset: cell_slim -synonym: "cells" EXACT PLURAL [] +synonym: "cells" EXACT OMO:0003004 [] xref: CARO:0000013 xref: CL:0000000 xref: TAO:0009000 @@ -34136,7 +34135,7 @@ id: ZFA:0009001 name: receptor cell (sensu Animalia) namespace: zebrafish_anatomy subset: cell_slim -synonym: "receptor cells (sensu Animalia)" EXACT PLURAL [] +synonym: "receptor cells (sensu Animalia)" EXACT OMO:0003004 [] xref: CL:0000006 xref: TAO:0009001 is_a: ZFA:0009248 ! neuron @@ -34149,7 +34148,7 @@ name: early embryonic cell namespace: zebrafish_anatomy def: "An embryonic cell that is formed before the germ layers have been formed." [CL:curator] subset: cell_slim -synonym: "early embryonic cells" EXACT PLURAL [] +synonym: "early embryonic cells" EXACT OMO:0003004 [] xref: CL:0000007 xref: TAO:0009002 is_a: ZFA:0007089 ! embryonic cell @@ -34162,7 +34161,7 @@ name: cranial neural crest cell namespace: zebrafish_anatomy def: "A cell of the cranial neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "cranial neural crest cells" EXACT PLURAL [] +synonym: "cranial neural crest cells" EXACT OMO:0003004 [] is_a: ZFA:0009165 ! neural crest cell relationship: end ZFS:0000029 ! pharyngula:prim-5 relationship: part_of ZFA:0001194 ! cranial neural crest @@ -34174,7 +34173,7 @@ name: trunk neural crest cell namespace: zebrafish_anatomy def: "A cell of the trunk neural crest." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "trunk neural crest cells" EXACT PLURAL [] +synonym: "trunk neural crest cells" EXACT OMO:0003004 [] is_a: ZFA:0009165 ! neural crest cell relationship: end ZFS:0000031 ! pharyngula:prim-25 relationship: part_of ZFA:0001024 ! trunk neural crest @@ -34186,7 +34185,7 @@ name: spermatocyte namespace: zebrafish_anatomy def: "A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids." [CL:curator] subset: cell_slim -synonym: "spermatocytes" EXACT PLURAL [] +synonym: "spermatocytes" EXACT OMO:0003004 [] xref: CL:0000017 xref: TAO:0009005 is_a: ZFA:0009016 ! germ line cell @@ -34217,7 +34216,7 @@ namespace: zebrafish_anatomy alt_id: ZFA:0001337 def: "An euploid male germ cell of an early stage of spermatogenesis." [CL:curator] subset: cell_slim -synonym: "spermatogonia" EXACT PLURAL [] +synonym: "spermatogonia" EXACT OMO:0003004 [] xref: CL:0000020 xref: TAO:0001337 xref: TAO:0009007 @@ -34243,7 +34242,7 @@ id: ZFA:0009010 name: glioblast namespace: zebrafish_anatomy subset: cell_slim -synonym: "glioblasts" EXACT PLURAL [] +synonym: "glioblasts" EXACT OMO:0003004 [] xref: CL:0000030 xref: TAO:0009010 is_a: ZFA:0009000 ! cell @@ -34257,7 +34256,7 @@ id: ZFA:0009011 name: neuroblast namespace: zebrafish_anatomy subset: cell_slim -synonym: "neuroblasts" EXACT PLURAL [] +synonym: "neuroblasts" EXACT OMO:0003004 [] xref: CL:0000031 xref: TAO:0009011 is_a: ZFA:0009019 ! neuronal stem cell @@ -34269,7 +34268,7 @@ id: ZFA:0009012 name: neuroplacodal cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "neuroplacodal cells" EXACT PLURAL [] +synonym: "neuroplacodal cells" EXACT OMO:0003004 [] xref: CL:0000032 xref: TAO:0009012 is_a: ZFA:0009000 ! cell @@ -34281,7 +34280,7 @@ id: ZFA:0009013 name: single fate stem cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "single fate stem cells" EXACT PLURAL [] +synonym: "single fate stem cells" EXACT OMO:0003004 [] xref: CL:0000035 xref: TAO:0009013 is_a: ZFA:0009307 ! somatic stem cell @@ -34332,7 +34331,7 @@ name: germ line cell namespace: zebrafish_anatomy def: "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm] subset: cell_slim -synonym: "germ line cells" EXACT PLURAL [] +synonym: "germ line cells" EXACT OMO:0003004 [] xref: CL:0000039 xref: TAO:0009016 is_a: ZFA:0009000 ! cell @@ -34374,7 +34373,7 @@ id: ZFA:0009019 name: neuronal stem cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "neuronal stem cells" EXACT PLURAL [] +synonym: "neuronal stem cells" EXACT OMO:0003004 [] xref: CL:0000047 xref: TAO:0009019 is_a: ZFA:0009020 ! multi fate stem cell @@ -34453,7 +34452,7 @@ name: totipotent stem cell namespace: zebrafish_anatomy def: "A stem cell from which all cells of the body can form." [CL:curator] subset: cell_slim -synonym: "totipotent stem cells" EXACT PLURAL [] +synonym: "totipotent stem cells" EXACT OMO:0003004 [] xref: CL:0000052 xref: TAO:0009024 is_a: ZFA:0009307 ! somatic stem cell @@ -34466,7 +34465,7 @@ name: myoblast namespace: zebrafish_anatomy def: "An embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes." [CL:curator] subset: cell_slim -synonym: "myoblasts" EXACT PLURAL [] +synonym: "myoblasts" EXACT OMO:0003004 [] xref: CL:0000056 xref: TAO:0009025 is_a: ZFA:0009000 ! cell @@ -34481,7 +34480,7 @@ namespace: zebrafish_anatomy def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules." [CL:curator] comment: Not in CL. subset: cell_slim -synonym: "fibroblasts" EXACT PLURAL [] +synonym: "fibroblasts" EXACT OMO:0003004 [] xref: CL:0000057 xref: TAO:0009026 is_a: ZFA:0009000 ! cell @@ -34495,7 +34494,7 @@ name: chondroblast namespace: zebrafish_anatomy def: "Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium)." [GOC:tfm] subset: cell_slim -synonym: "chondroblasts" EXACT PLURAL [] +synonym: "chondroblasts" EXACT OMO:0003004 [] xref: CL:0000058 xref: TAO:0009027 is_a: ZFA:0009000 ! cell @@ -34512,7 +34511,7 @@ name: ameloblast namespace: zebrafish_anatomy def: "A cylindrical epithelial cell in the innermost layer of the enamel organ. Their functions include contribution to the development of the dentinoenamel junction by the deposition of a layer of the matrix, thus producing the foundation for the prisms (the structural units of the dental enamel), and production of the matrix for the enamel prisms and interprismatic substance. (From Jablonski's Dictionary of Dentistry, 1992)." [CL:curator] subset: cell_slim -synonym: "ameloblasts" EXACT PLURAL [] +synonym: "ameloblasts" EXACT OMO:0003004 [] xref: CL:0000059 xref: TAO:0009028 is_a: ZFA:0009000 ! cell @@ -34526,7 +34525,7 @@ name: odontoblast namespace: zebrafish_anatomy def: "Skeletogenic cell that secretes dentine matrix, is derived from the tooth pulp." [GOC:cvs] subset: cell_slim -synonym: "odontoblasts" EXACT PLURAL [] +synonym: "odontoblasts" EXACT OMO:0003004 [] xref: CL:0000060 xref: TAO:0009029 is_a: ZFA:0009000 ! cell @@ -34541,7 +34540,7 @@ name: cementoblast namespace: zebrafish_anatomy def: "A cell of ectomesenchymal origin concerned with the formation of the layer of cementum on the roots of teeth." [ISBN:0781733901] subset: cell_slim -synonym: "cementoblasts" EXACT PLURAL [] +synonym: "cementoblasts" EXACT OMO:0003004 [] xref: CL:0000061 xref: TAO:0009030 is_a: ZFA:0009000 ! cell @@ -34555,7 +34554,7 @@ name: osteoblast namespace: zebrafish_anatomy def: "A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [CL:curator] subset: cell_slim -synonym: "osteoblasts" EXACT PLURAL [] +synonym: "osteoblasts" EXACT OMO:0003004 [] xref: CL:0000062 xref: TAO:0009031 is_a: ZFA:0009000 ! cell @@ -34569,7 +34568,7 @@ id: ZFA:0009032 name: ciliated cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "ciliated cells" EXACT PLURAL [] +synonym: "ciliated cells" EXACT OMO:0003004 [] xref: CL:0000064 xref: TAO:0009032 is_a: ZFA:0009000 ! cell @@ -34597,7 +34596,7 @@ name: epithelial cell namespace: zebrafish_anatomy def: "A cell that is usually found in a two-dimensional sheet with a free surface." [CL:curator] subset: cell_slim -synonym: "epithelial cells" EXACT PLURAL [] +synonym: "epithelial cells" EXACT OMO:0003004 [] xref: CL:0000066 xref: TAO:0009034 is_a: ZFA:0009000 ! cell @@ -34610,7 +34609,7 @@ id: ZFA:0009035 name: ciliated epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "ciliated epithelial cells" EXACT PLURAL [] +synonym: "ciliated epithelial cells" EXACT OMO:0003004 [] xref: CL:0000067 xref: TAO:0009035 is_a: ZFA:0009032 ! ciliated cell @@ -34623,7 +34622,7 @@ id: ZFA:0009036 name: blood vessel endothelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "blood vessel endothelial cells" EXACT PLURAL [] +synonym: "blood vessel endothelial cells" EXACT OMO:0003004 [] xref: CL:0000071 xref: TAO:0009036 is_a: ZFA:0009039 ! squamous epithelial cell @@ -34639,7 +34638,7 @@ id: ZFA:0009037 name: barrier epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "barrier epithelial cells" EXACT PLURAL [] +synonym: "barrier epithelial cells" EXACT OMO:0003004 [] xref: CL:0000073 xref: TAO:0009037 is_a: ZFA:0009000 ! cell @@ -34651,7 +34650,7 @@ id: ZFA:0009038 name: columnar/cuboidal epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "columnar/cuboidal epithelial cells" EXACT PLURAL [] +synonym: "columnar/cuboidal epithelial cells" EXACT OMO:0003004 [] xref: CL:0000075 xref: TAO:0009038 is_a: ZFA:0009034 ! epithelial cell @@ -34663,7 +34662,7 @@ id: ZFA:0009039 name: squamous epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "squamous epithelial cells" EXACT PLURAL [] +synonym: "squamous epithelial cells" EXACT OMO:0003004 [] xref: CL:0000076 xref: TAO:0009039 is_a: ZFA:0009034 ! epithelial cell @@ -34675,7 +34674,7 @@ id: ZFA:0009040 name: mesothelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "mesothelial cells" EXACT PLURAL [] +synonym: "mesothelial cells" EXACT OMO:0003004 [] xref: CL:0000077 xref: TAO:0009040 is_a: ZFA:0009039 ! squamous epithelial cell @@ -34689,7 +34688,7 @@ id: ZFA:0009041 name: peridermal cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "peridermal cells" EXACT PLURAL [] +synonym: "peridermal cells" EXACT OMO:0003004 [] xref: CL:0000078 xref: TAO:0009041 is_a: ZFA:0009039 ! squamous epithelial cell @@ -34701,7 +34700,7 @@ id: ZFA:0009042 name: stratified epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "stratified epithelial cells" EXACT PLURAL [] +synonym: "stratified epithelial cells" EXACT OMO:0003004 [] xref: CL:0000079 xref: TAO:0009042 is_a: ZFA:0009034 ! epithelial cell @@ -34715,7 +34714,7 @@ name: circulating cell namespace: zebrafish_anatomy def: "A cell which moves among different tissues of the body, via blood, lymph, or other medium." [CL:curator] subset: cell_slim -synonym: "circulating cells" EXACT PLURAL [] +synonym: "circulating cells" EXACT OMO:0003004 [] xref: CL:0000080 xref: TAO:0009043 is_a: ZFA:0009000 ! cell @@ -34728,7 +34727,7 @@ name: blood cell namespace: zebrafish_anatomy def: "A cell found predominately in the blood." [CL:curator] subset: cell_slim -synonym: "blood cells" EXACT PLURAL [] +synonym: "blood cells" EXACT OMO:0003004 [] xref: CL:0000081 xref: TAO:0009044 is_a: ZFA:0005830 ! hematopoietic cell @@ -34741,7 +34740,7 @@ id: ZFA:0009045 name: epithelial cell of pancreas namespace: zebrafish_anatomy subset: cell_slim -synonym: "epithelial cells of pancreas" EXACT PLURAL [] +synonym: "epithelial cells of pancreas" EXACT OMO:0003004 [] xref: CL:0000083 xref: TAO:0009045 is_a: ZFA:0009034 ! epithelial cell @@ -34799,7 +34798,7 @@ name: granulocyte namespace: zebrafish_anatomy def: "A leukocyte with abundant granules in the cytoplasm." [CL:curator] subset: cell_slim -synonym: "granulocytes" EXACT PLURAL [] +synonym: "granulocytes" EXACT OMO:0003004 [] xref: CL:0000094 xref: TAO:0009048 is_a: ZFA:0009326 ! myeloid leukocyte @@ -34837,7 +34836,7 @@ id: ZFA:0009050 name: sensory epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "sensory epithelial cells" EXACT PLURAL [] +synonym: "sensory epithelial cells" EXACT OMO:0003004 [] xref: CL:0000098 xref: TAO:0009050 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell @@ -34851,7 +34850,7 @@ name: interneuron namespace: zebrafish_anatomy def: "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions." [CL:curator] subset: cell_slim -synonym: "interneurons" EXACT PLURAL [] +synonym: "interneurons" EXACT OMO:0003004 [] xref: CL:0000099 xref: TAO:0009051 is_a: ZFA:0009248 ! neuron @@ -34888,7 +34887,7 @@ id: ZFA:0009054 name: polymodal neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "polymodal neurons" EXACT PLURAL [] +synonym: "polymodal neurons" EXACT OMO:0003004 [] xref: CL:0000102 xref: TAO:0009054 is_a: ZFA:0009248 ! neuron @@ -34901,7 +34900,7 @@ name: bipolar neuron namespace: zebrafish_anatomy def: "A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body." [ZFIN:ZDB-PUB-070221-4] subset: cell_slim -synonym: "bipolar neurons" EXACT PLURAL [] +synonym: "bipolar neurons" EXACT OMO:0003004 [] xref: CL:0000103 xref: TAO:0009055 is_a: ZFA:0009051 ! interneuron @@ -34914,7 +34913,7 @@ id: ZFA:0009056 name: multipolar neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "multipolar neurons" EXACT PLURAL [] +synonym: "multipolar neurons" EXACT OMO:0003004 [] xref: CL:0000104 xref: TAO:0009056 is_a: ZFA:0009248 ! neuron @@ -34926,7 +34925,7 @@ id: ZFA:0009057 name: pseudounipolar neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "pseudounipolar neurons" EXACT PLURAL [] +synonym: "pseudounipolar neurons" EXACT OMO:0003004 [] xref: CL:0000105 xref: TAO:0009057 is_a: ZFA:0009248 ! neuron @@ -34938,7 +34937,7 @@ id: ZFA:0009058 name: unipolar neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "unipolar neurons" EXACT PLURAL [] +synonym: "unipolar neurons" EXACT OMO:0003004 [] xref: CL:0000106 xref: TAO:0009058 is_a: ZFA:0009248 ! neuron @@ -34950,7 +34949,7 @@ id: ZFA:0009059 name: autonomic neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "autonomic neurons" EXACT PLURAL [] +synonym: "autonomic neurons" EXACT OMO:0003004 [] xref: CL:0000107 xref: TAO:0009059 is_a: ZFA:0009009 ! neuron neural crest derived @@ -34965,7 +34964,7 @@ name: cholinergic neuron namespace: zebrafish_anatomy def: "A neuron that uses acetylcholine as a vesicular neurotransmitter." [GOC:tfm] subset: cell_slim -synonym: "cholinergic neurons" EXACT PLURAL [] +synonym: "cholinergic neurons" EXACT OMO:0003004 [] xref: CL:0000108 xref: TAO:0009060 is_a: ZFA:0009248 ! neuron @@ -34977,7 +34976,7 @@ id: ZFA:0009061 name: adrenergic neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "adrenergic neurons" EXACT PLURAL [] +synonym: "adrenergic neurons" EXACT OMO:0003004 [] xref: CL:0000109 xref: TAO:0009061 is_a: ZFA:0009248 ! neuron @@ -34989,7 +34988,7 @@ id: ZFA:0009062 name: peptidergic neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "peptidergic neurons" EXACT PLURAL [] +synonym: "peptidergic neurons" EXACT OMO:0003004 [] xref: CL:0000110 xref: TAO:0009062 is_a: ZFA:0009248 ! neuron @@ -35001,7 +35000,7 @@ id: ZFA:0009063 name: peripheral neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "peripheral neurons" EXACT PLURAL [] +synonym: "peripheral neurons" EXACT OMO:0003004 [] xref: CL:0000111 xref: TAO:0009063 is_a: ZFA:0009009 ! neuron neural crest derived @@ -35015,7 +35014,7 @@ name: mononuclear phagocyte namespace: zebrafish_anatomy def: "A vertebrate phagocyte with a single nucleus." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim -synonym: "mononuclear phagocytes" EXACT PLURAL [] +synonym: "mononuclear phagocytes" EXACT OMO:0003004 [] xref: CL:0000113 xref: TAO:0009064 is_a: ZFA:0009357 ! mononuclear cell @@ -35027,7 +35026,7 @@ id: ZFA:0009065 name: endothelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "endothelial cells" EXACT PLURAL [] +synonym: "endothelial cells" EXACT OMO:0003004 [] xref: CL:0000115 xref: TAO:0009065 is_a: ZFA:0009130 ! lining cell @@ -35053,7 +35052,7 @@ id: ZFA:0009067 name: CNS neuron (sensu Vertebrata) namespace: zebrafish_anatomy subset: cell_slim -synonym: "CNS neurons (sensu Vertebrata)" EXACT PLURAL [] +synonym: "CNS neurons (sensu Vertebrata)" EXACT OMO:0003004 [] xref: CL:0000117 xref: TAO:0009067 is_a: ZFA:0009248 ! neuron @@ -35066,7 +35065,7 @@ id: ZFA:0009068 name: basket cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "basket cells" EXACT PLURAL [] +synonym: "basket cells" EXACT OMO:0003004 [] xref: CL:0000118 xref: TAO:0009068 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) @@ -35078,7 +35077,7 @@ id: ZFA:0009069 name: Golgi cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "Golgi cells" EXACT PLURAL [] +synonym: "Golgi cells" EXACT OMO:0003004 [] xref: CL:0000119 xref: TAO:0009069 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) @@ -35090,7 +35089,7 @@ id: ZFA:0009070 name: granule cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "granule cells" EXACT PLURAL [] +synonym: "granule cells" EXACT OMO:0003004 [] xref: CL:0000120 xref: TAO:0009070 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) @@ -35104,7 +35103,7 @@ name: Purkinje cell namespace: zebrafish_anatomy def: "The output neuron of the cerebellar cortex." [CL:curator] subset: cell_slim -synonym: "Purkinje cells" EXACT PLURAL [] +synonym: "Purkinje cells" EXACT OMO:0003004 [] xref: CL:0000121 xref: TAO:0009071 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) @@ -35119,7 +35118,7 @@ id: ZFA:0009072 name: stellate cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "stellate cells" EXACT PLURAL [] +synonym: "stellate cells" EXACT OMO:0003004 [] xref: CL:0000122 xref: TAO:0009072 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) @@ -35147,7 +35146,7 @@ id: ZFA:0009074 name: macroglial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "macroglial cells" EXACT PLURAL [] +synonym: "macroglial cells" EXACT OMO:0003004 [] xref: CL:0000126 xref: TAO:0009074 is_a: ZFA:0009147 ! glial cell (sensu Vertebrata) @@ -35161,7 +35160,7 @@ name: astrocyte namespace: zebrafish_anatomy def: "A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury." [CL:curator] subset: cell_slim -synonym: "astrocytes" EXACT PLURAL [] +synonym: "astrocytes" EXACT OMO:0003004 [] xref: CL:0000127 xref: TAO:0009075 is_a: ZFA:0009074 ! macroglial cell @@ -35200,7 +35199,7 @@ id: ZFA:0009078 name: gut endothelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "gut endothelial cells" EXACT PLURAL [] +synonym: "gut endothelial cells" EXACT OMO:0003004 [] xref: CL:0000131 xref: TAO:0009078 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell @@ -35216,7 +35215,7 @@ name: corneal endothelial cell namespace: zebrafish_anatomy def: "Cell of the single layer of large flattened cells covering the surface of the cornea." [CL:curator] subset: cell_slim -synonym: "corneal endothelial cells" EXACT PLURAL [] +synonym: "corneal endothelial cells" EXACT OMO:0003004 [] xref: CL:0000132 xref: TAO:0009079 is_a: ZFA:0009039 ! squamous epithelial cell @@ -35245,7 +35244,7 @@ name: mesenchymal cell namespace: zebrafish_anatomy def: "A cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets." [CL:curator] subset: cell_slim -synonym: "mesenchymal cells" EXACT PLURAL [] +synonym: "mesenchymal cells" EXACT OMO:0003004 [] xref: CL:0000134 xref: TAO:0009081 is_a: ZFA:0009000 ! cell @@ -35279,7 +35278,7 @@ name: osteocyte namespace: zebrafish_anatomy def: "A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi." [CL:curator] subset: cell_slim -synonym: "osteocytes" EXACT PLURAL [] +synonym: "osteocytes" EXACT OMO:0003004 [] xref: CL:0000137 xref: TAO:0009083 is_a: ZFA:0009000 ! cell @@ -35294,7 +35293,7 @@ name: chondrocyte namespace: zebrafish_anatomy def: "Polymorphic cell that form cartilage." [CL:curator] subset: cell_slim -synonym: "chondrocytes" EXACT PLURAL [] +synonym: "chondrocytes" EXACT OMO:0003004 [] xref: CL:0000138 xref: TAO:0009084 is_a: ZFA:0009093 ! GAG secreting cell @@ -35310,7 +35309,7 @@ name: amelocyte def: "Skeletogenic cell that produces enamel, overlies the odontogenic papilla, and arises from the differentiation of a preameloblast cell." [GOC:tfm] comment: Was CL:0000139, seems that cell type was merged into CL:0000059 along with CL:0000053. subset: cell_slim -synonym: "amelocytes" EXACT PLURAL [] +synonym: "amelocytes" EXACT OMO:0003004 [] xref: CL:0000059 xref: TAO:0009085 is_a: ZFA:0009089 ! simple columnar epithelial cell @@ -35323,7 +35322,7 @@ id: ZFA:0009086 name: odontocyte namespace: zebrafish_anatomy subset: cell_slim -synonym: "odontocytes" EXACT PLURAL [] +synonym: "odontocytes" EXACT OMO:0003004 [] xref: CL:0000140 xref: TAO:0009086 is_a: ZFA:0009000 ! cell @@ -35338,7 +35337,7 @@ name: cementocyte namespace: zebrafish_anatomy def: "An osteocytelike cell with numerous processes, trapped in a lacuna in the cement of the tooth." [ISBN:0781733901] subset: cell_slim -synonym: "cementocytes" EXACT PLURAL [] +synonym: "cementocytes" EXACT OMO:0003004 [] xref: CL:0000141 xref: TAO:0009087 is_a: ZFA:0009000 ! cell @@ -35367,7 +35366,7 @@ id: ZFA:0009089 name: simple columnar epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "simple columnar epithelial cells" EXACT PLURAL [] +synonym: "simple columnar epithelial cells" EXACT OMO:0003004 [] xref: CL:0000146 xref: TAO:0009089 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell @@ -35411,7 +35410,7 @@ name: exocrine cell namespace: zebrafish_anatomy def: "A cell of an exocrine gland, i.e. a gland that discharges its secretion via a duct." [ZFIN:ZDB-PUB-070221-5] subset: cell_slim -synonym: "exocrine cells" EXACT PLURAL [] +synonym: "exocrine cells" EXACT OMO:0003004 [] xref: CL:0000152 xref: TAO:0009092 is_a: ZFA:0009000 ! cell @@ -35449,7 +35448,7 @@ id: ZFA:0009095 name: acid secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "acid secreting cells" EXACT PLURAL [] +synonym: "acid secreting cells" EXACT OMO:0003004 [] xref: CL:0000161 xref: TAO:0009095 is_a: ZFA:0009000 ! cell @@ -35462,7 +35461,7 @@ name: endocrine cell namespace: zebrafish_anatomy def: "A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions." [CL:curator] subset: cell_slim -synonym: "endocrine cells" EXACT PLURAL [] +synonym: "endocrine cells" EXACT OMO:0003004 [] xref: CL:0000163 xref: TAO:0009096 is_a: ZFA:0009000 ! cell @@ -35476,7 +35475,7 @@ name: enteroendocrine cell namespace: zebrafish_anatomy def: "An endocrine cell that is located in the epithelium of the gastrointestinal tract." [SANBI:curator] subset: cell_slim -synonym: "enteroendocrine cells" EXACT PLURAL [] +synonym: "enteroendocrine cells" EXACT OMO:0003004 [] xref: CL:0000164 xref: TAO:0009097 is_a: ZFA:0009096 ! endocrine cell @@ -35516,7 +35515,7 @@ id: ZFA:0009100 name: peptide hormone secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "peptide hormone secreting cells" EXACT PLURAL [] +synonym: "peptide hormone secreting cells" EXACT OMO:0003004 [] xref: CL:0000167 xref: TAO:0009100 is_a: ZFA:0009096 ! endocrine cell @@ -35528,7 +35527,7 @@ id: ZFA:0009101 name: insulin secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "insulin secreting cells" EXACT PLURAL [] +synonym: "insulin secreting cells" EXACT OMO:0003004 [] xref: CL:0000168 xref: TAO:0009101 is_a: ZFA:0009100 ! peptide hormone secreting cell @@ -35553,7 +35552,7 @@ id: ZFA:0009103 name: glucagon secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "glucagon secreting cells" EXACT PLURAL [] +synonym: "glucagon secreting cells" EXACT OMO:0003004 [] xref: CL:0000170 xref: TAO:0009103 is_a: ZFA:0009100 ! peptide hormone secreting cell @@ -35578,7 +35577,7 @@ id: ZFA:0009105 name: somatostatin secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "somatostatin secreting cells" EXACT PLURAL [] +synonym: "somatostatin secreting cells" EXACT OMO:0003004 [] xref: CL:0000172 xref: TAO:0009105 is_a: ZFA:0009100 ! peptide hormone secreting cell @@ -35590,7 +35589,7 @@ id: ZFA:0009106 name: steroid hormone secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "steroid hormone secreting cells" EXACT PLURAL [] +synonym: "steroid hormone secreting cells" EXACT OMO:0003004 [] xref: CL:0000174 xref: TAO:0009106 is_a: ZFA:0009096 ! endocrine cell @@ -35602,7 +35601,7 @@ id: ZFA:0009107 name: testosterone secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "testosterone secreting cells" EXACT PLURAL [] +synonym: "testosterone secreting cells" EXACT OMO:0003004 [] xref: CL:0000177 xref: TAO:0009107 is_a: ZFA:0009106 ! steroid hormone secreting cell @@ -35627,7 +35626,7 @@ id: ZFA:0009109 name: progesterone secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "progesterone secreting cells" EXACT PLURAL [] +synonym: "progesterone secreting cells" EXACT OMO:0003004 [] xref: CL:0000179 xref: TAO:0009109 is_a: ZFA:0009106 ! steroid hormone secreting cell @@ -35639,7 +35638,7 @@ id: ZFA:0009110 name: estradiol secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "estradiol secreting cells" EXACT PLURAL [] +synonym: "estradiol secreting cells" EXACT OMO:0003004 [] xref: CL:0000180 xref: TAO:0009110 is_a: ZFA:0009106 ! steroid hormone secreting cell @@ -35652,7 +35651,7 @@ name: hepatocyte namespace: zebrafish_anatomy def: "The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules." [CL:curator] subset: cell_slim -synonym: "hepatocytes" EXACT PLURAL [] +synonym: "hepatocytes" EXACT OMO:0003004 [] xref: CL:0000182 xref: TAO:0009111 is_a: ZFA:0009034 ! epithelial cell @@ -35668,7 +35667,7 @@ namespace: zebrafish_anatomy def: "An elongated, contractile cell found wrapped about precapillary arterioles outside the basement membrane. Pericytes are present in capillaries where proper adventitial and muscle layer are missing (thus distinguishing this cell type from adventitial cells). They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells." [CL:curator, ISBN:0721662544, PMID:16807374, PMID:17986482, PMID:20024907] comment: CL:0000184 was merged into CL:0000699. subset: cell_slim -synonym: "pericytes" EXACT PLURAL [] +synonym: "pericytes" EXACT OMO:0003004 [] synonym: "perivascular cells" EXACT [] xref: CL:0000669 xref: TAO:0009112 @@ -35681,7 +35680,7 @@ id: ZFA:0009113 name: myoepithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "myoepithelial cells" EXACT PLURAL [] +synonym: "myoepithelial cells" EXACT OMO:0003004 [] xref: CL:0000185 xref: TAO:0009113 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell @@ -35788,7 +35787,7 @@ name: mechanoreceptor cell namespace: zebrafish_anatomy def: "A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system." [CL:curator] subset: cell_slim -synonym: "mechanoreceptor cells" EXACT PLURAL [] +synonym: "mechanoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000199 xref: TAO:0009120 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) @@ -35803,7 +35802,7 @@ def: "A mechanoreceptor cell located in the inner ear that is sensitive to audit comment: Has alt_id CL:0000201. subset: cell_slim synonym: "auditory hair cell" EXACT [] -synonym: "auditory receptor cells" EXACT PLURAL [] +synonym: "auditory receptor cells" EXACT OMO:0003004 [] xref: CL:0000202 xref: TAO:0009121 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) @@ -35823,7 +35822,7 @@ name: thermoreceptor cell namespace: zebrafish_anatomy def: "A cellular receptor which mediates the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain." [CL:curator] subset: cell_slim -synonym: "thermoreceptor cells" EXACT PLURAL [] +synonym: "thermoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000205 xref: TAO:0009123 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) @@ -35836,7 +35835,7 @@ name: chemoreceptor cell namespace: zebrafish_anatomy def: "A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood." [CL:curator] subset: cell_slim -synonym: "chemoreceptor cells" EXACT PLURAL [] +synonym: "chemoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000206 xref: TAO:0009124 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) @@ -35863,7 +35862,7 @@ id: ZFA:0009126 name: taste receptor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "taste receptor cells" EXACT PLURAL [] +synonym: "taste receptor cells" EXACT OMO:0003004 [] xref: CL:0000209 xref: TAO:0009126 is_a: ZFA:0009124 ! chemoreceptor cell @@ -35877,7 +35876,7 @@ name: photoreceptor cell namespace: zebrafish_anatomy def: "A cell specialized to detect and transduce light." [CL:curator] subset: cell_slim -synonym: "photoreceptor cells" EXACT PLURAL [] +synonym: "photoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000210 xref: TAO:0009127 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) @@ -35890,7 +35889,7 @@ name: electrically active cell namespace: zebrafish_anatomy def: "A cell whose function is determined by the generation or the reception of an electric signal." [CL:curator] subset: cell_slim -synonym: "electrically active cells" EXACT PLURAL [] +synonym: "electrically active cells" EXACT OMO:0003004 [] xref: CL:0000211 xref: TAO:0009128 is_a: ZFA:0009000 ! cell @@ -35903,7 +35902,7 @@ name: absorptive cell namespace: zebrafish_anatomy def: "A cell that takes up and metabolizes substances." [CL:curator] subset: cell_slim -synonym: "absorptive cells" EXACT PLURAL [] +synonym: "absorptive cells" EXACT OMO:0003004 [] xref: CL:0000212 xref: TAO:0009129 is_a: ZFA:0009000 ! cell @@ -35928,7 +35927,7 @@ id: ZFA:0009131 name: synovial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "synovial cells" EXACT PLURAL [] +synonym: "synovial cells" EXACT OMO:0003004 [] xref: CL:0000214 xref: TAO:0009131 is_a: ZFA:0009093 ! GAG secreting cell @@ -35944,7 +35943,7 @@ name: barrier cell namespace: zebrafish_anatomy def: "A cell whose primary function is to prevent the transport of stuff across compartments." [CL:curator] subset: cell_slim -synonym: "barrier cells" EXACT PLURAL [] +synonym: "barrier cells" EXACT OMO:0003004 [] xref: CL:0000215 xref: TAO:0009132 is_a: ZFA:0009000 ! cell @@ -35957,7 +35956,7 @@ name: Sertoli cell namespace: zebrafish_anatomy def: "A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier." [CL:curator] subset: cell_slim -synonym: "Sertoli cells" EXACT PLURAL [] +synonym: "Sertoli cells" EXACT OMO:0003004 [] xref: CL:0000216 xref: TAO:0009133 is_a: ZFA:0009132 ! barrier cell @@ -35970,7 +35969,7 @@ id: ZFA:0009134 name: insulating cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "insulating cells" EXACT PLURAL [] +synonym: "insulating cells" EXACT OMO:0003004 [] xref: CL:0000217 xref: TAO:0009134 is_a: ZFA:0009132 ! barrier cell @@ -35983,7 +35982,7 @@ name: myelinating Schwann cell namespace: zebrafish_anatomy def: "A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons." [CL:curator] subset: cell_slim -synonym: "Schwann cells" EXACT PLURAL [] +synonym: "Schwann cells" EXACT OMO:0003004 [] xref: CL:0000218 xref: TAO:0009135 is_a: ZFA:0009134 ! insulating cell @@ -36000,7 +35999,7 @@ name: motile cell namespace: zebrafish_anatomy def: "A cell that moves by its own activities." [CL:curator] subset: cell_slim -synonym: "motile cells" EXACT PLURAL [] +synonym: "motile cells" EXACT OMO:0003004 [] xref: CL:0000219 xref: TAO:0009136 is_a: ZFA:0009000 ! cell @@ -36056,7 +36055,7 @@ name: phagocyte namespace: zebrafish_anatomy def: "Any cell capable of ingesting particulate matter via phagocytosis." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim -synonym: "phagocytes" EXACT PLURAL [] +synonym: "phagocytes" EXACT OMO:0003004 [] xref: CL:0000234 xref: TAO:0009140 is_a: ZFA:0009136 ! motile cell @@ -36100,7 +36099,7 @@ id: ZFA:0009143 name: brush border epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "brush border epithelial cells" EXACT PLURAL [] +synonym: "brush border epithelial cells" EXACT OMO:0003004 [] xref: CL:0000239 xref: TAO:0009143 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell @@ -36112,7 +36111,7 @@ id: ZFA:0009144 name: stratified squamous epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "stratified squamous epithelial cells" EXACT PLURAL [] +synonym: "stratified squamous epithelial cells" EXACT OMO:0003004 [] xref: CL:0000240 xref: TAO:0009144 is_a: ZFA:0009034 ! epithelial cell @@ -36124,7 +36123,7 @@ id: ZFA:0009145 name: stratified cuboidal epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "stratified cuboidal epithelial cells" EXACT PLURAL [] +synonym: "stratified cuboidal epithelial cells" EXACT OMO:0003004 [] xref: CL:0000241 xref: TAO:0009145 is_a: ZFA:0009034 ! epithelial cell @@ -36137,7 +36136,7 @@ name: Merkel cell namespace: zebrafish_anatomy def: "A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber." [CL:curator] subset: cell_slim -synonym: "Merkel cells" EXACT PLURAL [] +synonym: "Merkel cells" EXACT OMO:0003004 [] xref: CL:0000242 xref: TAO:0009146 is_a: ZFA:0009000 ! cell @@ -36150,7 +36149,7 @@ name: glial cell (sensu Vertebrata) namespace: zebrafish_anatomy def: "A non-neuronal cells of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear." [CL:curator] subset: cell_slim -synonym: "glial cells (sensu Vertebrata)" EXACT PLURAL [] +synonym: "glial cells (sensu Vertebrata)" EXACT OMO:0003004 [] xref: CL:0000243 xref: TAO:0009147 is_a: ZFA:0009073 ! glial cell @@ -36163,7 +36162,7 @@ id: ZFA:0009148 name: transitional epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "transitional epithelial cells" EXACT PLURAL [] +synonym: "transitional epithelial cells" EXACT OMO:0003004 [] xref: CL:0000244 xref: TAO:0009148 is_a: ZFA:0009034 ! epithelial cell @@ -36196,7 +36195,7 @@ def: "Primary sensory neurons with cell bodies located in the dorsal spinal cord subset: cell_slim synonym: "RB neuron" EXACT [] synonym: "Rohon-Beard cell" EXACT [] -synonym: "Rohon-Beard neurons" EXACT PLURAL [] +synonym: "Rohon-Beard neurons" EXACT OMO:0003004 [] xref: CL:0000247 xref: TAO:0009150 is_a: ZFA:0009053 ! sensory neuron @@ -36208,7 +36207,7 @@ id: ZFA:0009151 name: hatching gland cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "hatching gland cells" EXACT PLURAL [] +synonym: "hatching gland cells" EXACT OMO:0003004 [] xref: CL:0000249 xref: TAO:0009151 is_a: ZFA:0009000 ! cell @@ -36220,7 +36219,7 @@ id: ZFA:0009152 name: extramedullary cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "extramedullary cells" EXACT PLURAL [] +synonym: "extramedullary cells" EXACT OMO:0003004 [] xref: CL:0000251 xref: TAO:0009152 is_a: ZFA:0009053 ! sensory neuron @@ -36232,7 +36231,7 @@ id: ZFA:0009153 name: eurydendroid cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "eurydendroid cells" EXACT PLURAL [] +synonym: "eurydendroid cells" EXACT OMO:0003004 [] xref: CL:0000253 xref: TAO:0009153 is_a: ZFA:0009239 ! efferent neuron @@ -36245,7 +36244,7 @@ id: ZFA:0009154 name: eye photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "eye photoreceptor cells" EXACT PLURAL [] +synonym: "eye photoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000287 xref: TAO:0009154 is_a: ZFA:0009127 ! photoreceptor cell @@ -36279,7 +36278,7 @@ name: gamete namespace: zebrafish_anatomy def: "A mature sexual reproductive cell having a single set of unpaired chromosomes." [GOC:tfm] subset: cell_slim -synonym: "gametes" EXACT PLURAL [] +synonym: "gametes" EXACT OMO:0003004 [] xref: CL:0000300 xref: TAO:0009156 is_a: ZFA:0009016 ! germ line cell @@ -36292,7 +36291,7 @@ id: ZFA:0009157 name: keratin accumulating cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "keratin accumulating cells" EXACT PLURAL [] +synonym: "keratin accumulating cells" EXACT OMO:0003004 [] xref: CL:0000311 xref: TAO:0009157 is_a: ZFA:0009000 ! cell @@ -36305,7 +36304,7 @@ name: keratinocyte namespace: zebrafish_anatomy def: "An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell." [CL:curator] subset: cell_slim -synonym: "keratinocytes" EXACT PLURAL [] +synonym: "keratinocytes" EXACT OMO:0003004 [] xref: CL:0000312 xref: TAO:0009158 is_a: ZFA:0009157 ! keratin accumulating cell @@ -36333,7 +36332,7 @@ id: ZFA:0009160 name: seminal fluid secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "seminal fluid secreting cells" EXACT PLURAL [] +synonym: "seminal fluid secreting cells" EXACT OMO:0003004 [] xref: CL:0000321 xref: TAO:0009160 is_a: ZFA:0009000 ! cell @@ -36346,7 +36345,7 @@ name: metanephric mesenchyme stem cell namespace: zebrafish_anatomy comment: No metanephrose in zebrafish. Consider nephrogenic mesenchyme stem cell ZFA:0009187. subset: cell_slim -synonym: "metanephric mesenchyme stem cells" EXACT PLURAL [] +synonym: "metanephric mesenchyme stem cells" EXACT OMO:0003004 [] xref: CL:0000324 xref: TAO:0009161 is_obsolete: true @@ -36356,7 +36355,7 @@ id: ZFA:0009162 name: extracellular matrix secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "extracellular matrix secreting cells" EXACT PLURAL [] +synonym: "extracellular matrix secreting cells" EXACT OMO:0003004 [] xref: CL:0000327 xref: TAO:0009162 is_a: ZFA:0009226 ! stromal cell @@ -36368,7 +36367,7 @@ id: ZFA:0009163 name: myelin accumulating cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "myelin accumulating cells" EXACT PLURAL [] +synonym: "myelin accumulating cells" EXACT OMO:0003004 [] xref: CL:0000328 xref: TAO:0009163 is_a: ZFA:0009000 ! cell @@ -36380,7 +36379,7 @@ id: ZFA:0009164 name: oxygen accumulating cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "oxygen accumulating cells" EXACT PLURAL [] +synonym: "oxygen accumulating cells" EXACT OMO:0003004 [] xref: CL:0000329 xref: TAO:0009164 is_a: ZFA:0009000 ! cell @@ -36393,7 +36392,7 @@ name: neural crest cell namespace: zebrafish_anatomy def: "A cell of the neural crest. The neural crest is a strip of specialized ectoderm, the neural plate border, which flanks each side of the embryonic neural plate. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesenchymal transition and delamination to form migratory neural crest cells. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells." [GOC:ymb, ORCiD:0000-0002-9900-7880] subset: cell_slim -synonym: "neural crest cells" EXACT PLURAL [] +synonym: "neural crest cells" EXACT OMO:0003004 [] is_a: ZFA:0007089 ! embryonic cell relationship: end ZFS:0000031 ! pharyngula:prim-25 relationship: part_of ZFA:0000045 ! neural crest @@ -36404,7 +36403,7 @@ id: ZFA:0009166 name: mesenchyme condensation cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "mesenchyme condensation cells" EXACT PLURAL [] +synonym: "mesenchyme condensation cells" EXACT OMO:0003004 [] xref: CL:0000335 xref: TAO:0009166 is_a: ZFA:0009000 ! cell @@ -36441,7 +36440,7 @@ id: ZFA:0009169 name: glioblast (sensu Vertebrata) namespace: zebrafish_anatomy subset: cell_slim -synonym: "glioblasts (sensu Vertebrata)" EXACT PLURAL [] +synonym: "glioblasts (sensu Vertebrata)" EXACT OMO:0003004 [] xref: CL:0000339 xref: TAO:0009169 is_a: ZFA:0009010 ! glioblast @@ -36453,7 +36452,7 @@ id: ZFA:0009170 name: pigment cell (sensu Vertebrata) namespace: zebrafish_anatomy subset: cell_slim -synonym: "pigment cells (sensu Vertebrata)" EXACT PLURAL [] +synonym: "pigment cells (sensu Vertebrata)" EXACT OMO:0003004 [] xref: CL:0000342 xref: TAO:0009170 is_a: ZFA:0009090 ! pigment cell @@ -36465,7 +36464,7 @@ id: ZFA:0009171 name: visual pigment cell (sensu Vertebrata) namespace: zebrafish_anatomy subset: cell_slim -synonym: "visual pigment cells (sensu Vertebrata)" EXACT PLURAL [] +synonym: "visual pigment cells (sensu Vertebrata)" EXACT OMO:0003004 [] xref: CL:0000343 xref: TAO:0009171 is_a: ZFA:0009170 ! pigment cell (sensu Vertebrata) @@ -36479,7 +36478,7 @@ name: non-visual cell (sensu Vertebrata) namespace: zebrafish_anatomy comment: Obsoleted because CL obsoleted. Consider pigment cell ZFA:0009090 subset: cell_slim -synonym: "non-visual cells (sensu Vertebrata)" EXACT PLURAL [] +synonym: "non-visual cells (sensu Vertebrata)" EXACT OMO:0003004 [] xref: CL:0000344 xref: TAO:0009172 is_obsolete: true @@ -36489,7 +36488,7 @@ id: ZFA:0009173 name: dental papilla cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "dental papilla cells" EXACT PLURAL [] +synonym: "dental papilla cells" EXACT OMO:0003004 [] xref: CL:0000345 xref: TAO:0009173 is_a: ZFA:0009000 ! cell @@ -36504,7 +36503,7 @@ name: scleral cell namespace: zebrafish_anatomy def: "A cell of the sclera of the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim -synonym: "scleral cells" EXACT PLURAL [] +synonym: "scleral cells" EXACT OMO:0003004 [] xref: CL:0000347 xref: TAO:0009174 is_a: ZFA:0009000 ! cell @@ -36519,7 +36518,7 @@ name: choroidal cell of the eye namespace: zebrafish_anatomy def: "A cell of the choroid of the eye." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim -synonym: "choroidal cells" EXACT PLURAL [] +synonym: "choroidal cells" EXACT OMO:0003004 [] xref: CL:0000348 xref: TAO:0009175 is_a: ZFA:0009000 ! cell @@ -36532,7 +36531,7 @@ id: ZFA:0009176 name: extraembryonic cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "extraembryonic cells" EXACT PLURAL [] +synonym: "extraembryonic cells" EXACT OMO:0003004 [] xref: CL:0000349 xref: TAO:0009176 is_a: ZFA:0009000 ! cell @@ -36558,7 +36557,7 @@ id: ZFA:0009178 name: blastemal cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "blastemal cells" EXACT PLURAL [] +synonym: "blastemal cells" EXACT OMO:0003004 [] xref: CL:0000354 xref: TAO:0009178 is_a: ZFA:0009020 ! multi fate stem cell @@ -36570,7 +36569,7 @@ id: ZFA:0009179 name: muscle stem cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "muscle stem cells" EXACT PLURAL [] +synonym: "muscle stem cells" EXACT OMO:0003004 [] xref: CL:0000355 xref: TAO:0009179 is_a: ZFA:0009013 ! single fate stem cell @@ -36583,7 +36582,7 @@ id: ZFA:0009180 name: stratified epithelial stem cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "stratified epithelial stem cells" EXACT PLURAL [] +synonym: "stratified epithelial stem cells" EXACT OMO:0003004 [] xref: CL:0000357 xref: TAO:0009180 is_a: ZFA:0009000 ! cell @@ -36595,7 +36594,7 @@ id: ZFA:0009181 name: vascular associated smooth muscle cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "vascular associated smooth muscle cells" EXACT PLURAL [] +synonym: "vascular associated smooth muscle cells" EXACT OMO:0003004 [] xref: CL:0000359 xref: TAO:0009181 is_a: ZFA:0005944 ! mural cell @@ -36609,7 +36608,7 @@ name: gastrula cell namespace: zebrafish_anatomy def: "A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers." [CL:curator] subset: cell_slim -synonym: "gastrula cells" EXACT PLURAL [] +synonym: "gastrula cells" EXACT OMO:0003004 [] xref: CL:0000361 xref: TAO:0009182 is_a: ZFA:0009002 ! early embryonic cell @@ -36622,7 +36621,7 @@ name: epidermal cell namespace: zebrafish_anatomy def: "A cell found in the outermost layer of the organism." [CL:curator] subset: cell_slim -synonym: "epidermal cells" EXACT PLURAL [] +synonym: "epidermal cells" EXACT OMO:0003004 [] xref: CL:0000362 xref: TAO:0009183 is_a: ZFA:0009039 ! squamous epithelial cell @@ -36634,7 +36633,7 @@ id: ZFA:0009184 name: osteoprogenitor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "osteoprogenitor cells" EXACT PLURAL [] +synonym: "osteoprogenitor cells" EXACT OMO:0003004 [] xref: CL:0000375 xref: TAO:0009184 is_a: ZFA:0009013 ! single fate stem cell @@ -36647,7 +36646,7 @@ id: ZFA:0009185 name: sensory processing neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "sensory processing neurons" EXACT PLURAL [] +synonym: "sensory processing neurons" EXACT OMO:0003004 [] xref: CL:0000379 xref: TAO:0009185 is_a: ZFA:0009248 ! neuron @@ -36659,7 +36658,7 @@ id: ZFA:0009186 name: neurosecretory neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "neurosecretory neurons" EXACT PLURAL [] +synonym: "neurosecretory neurons" EXACT OMO:0003004 [] xref: CL:0000381 xref: TAO:0009186 is_a: ZFA:0009239 ! efferent neuron @@ -36671,7 +36670,7 @@ id: ZFA:0009187 name: nephrogenic mesenchyme stem cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "nephrogenic mesenchyme stem cells" EXACT PLURAL [] +synonym: "nephrogenic mesenchyme stem cells" EXACT OMO:0003004 [] xref: CL:0000383 xref: TAO:0009187 is_a: ZFA:0009020 ! multi fate stem cell @@ -36684,7 +36683,7 @@ id: ZFA:0009188 name: ligament cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "ligament cells" EXACT PLURAL [] +synonym: "ligament cells" EXACT OMO:0003004 [] xref: CL:0000384 xref: TAO:0009188 is_a: ZFA:0009000 ! cell @@ -36710,7 +36709,7 @@ name: electrically responsive cell namespace: zebrafish_anatomy def: "A cell whose function is determined by its response to an electric signal." [CL:curator] subset: cell_slim -synonym: "electrically responsive cells" EXACT PLURAL [] +synonym: "electrically responsive cells" EXACT OMO:0003004 [] xref: CL:0000393 xref: TAO:0009190 is_a: ZFA:0009128 ! electrically active cell @@ -36723,7 +36722,7 @@ name: CNS interneuron namespace: zebrafish_anatomy def: "Interneuron that is part of the central nervous system." [GOC:cvs, ORCiD:0000-0002-2244-7917] subset: cell_slim -synonym: "CNS interneurons" EXACT PLURAL [] +synonym: "CNS interneurons" EXACT OMO:0003004 [] xref: CL:0000402 xref: TAO:0009191 is_a: ZFA:0009051 ! interneuron @@ -36737,7 +36736,7 @@ name: electrically signaling cell namespace: zebrafish_anatomy def: "A cell that initiates an electrical signal and passes that signal to another cell." [CL:curator] subset: cell_slim -synonym: "electrically signaling cells" EXACT PLURAL [] +synonym: "electrically signaling cells" EXACT OMO:0003004 [] xref: CL:0000404 xref: TAO:0009193 is_a: ZFA:0009128 ! electrically active cell @@ -36749,7 +36748,7 @@ id: ZFA:0009194 name: CNS short range interneuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "CNS short range interneurons" EXACT PLURAL [] +synonym: "CNS short range interneurons" EXACT OMO:0003004 [] xref: CL:0000406 xref: TAO:0009194 is_a: ZFA:0009191 ! CNS interneuron @@ -36761,7 +36760,7 @@ id: ZFA:0009195 name: CNS long range interneuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "CNS long range interneurons" EXACT PLURAL [] +synonym: "CNS long range interneurons" EXACT OMO:0003004 [] xref: CL:0000410 xref: TAO:0009195 is_a: ZFA:0009191 ! CNS interneuron @@ -36773,7 +36772,7 @@ id: ZFA:0009196 name: hypodermal cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "hypodermal cells" EXACT PLURAL [] +synonym: "hypodermal cells" EXACT OMO:0003004 [] xref: CL:0000411 xref: TAO:0009196 is_a: ZFA:0009039 ! squamous epithelial cell @@ -36819,7 +36818,7 @@ id: ZFA:0009200 name: reticular cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "reticular cells" EXACT PLURAL [] +synonym: "reticular cells" EXACT OMO:0003004 [] xref: CL:0000432 xref: TAO:0009200 is_a: ZFA:0009026 ! fibroblast @@ -36831,7 +36830,7 @@ id: ZFA:0009201 name: alkali secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "alkali secreting cells" EXACT PLURAL [] +synonym: "alkali secreting cells" EXACT OMO:0003004 [] xref: CL:0000435 xref: TAO:0009201 is_a: ZFA:0009000 ! cell @@ -36909,7 +36908,7 @@ id: ZFA:0009206 name: calcitonin secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "calcitonin secreting cells" EXACT PLURAL [] +synonym: "calcitonin secreting cells" EXACT OMO:0003004 [] xref: CL:0000443 xref: TAO:0009206 is_a: ZFA:0009100 ! peptide hormone secreting cell @@ -36946,7 +36945,7 @@ id: ZFA:0009210 name: thyroid hormone secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "thyroid hormone secreting cells" EXACT PLURAL [] +synonym: "thyroid hormone secreting cells" EXACT OMO:0003004 [] xref: CL:0000452 xref: TAO:0009210 is_a: ZFA:0009096 ! endocrine cell @@ -36958,7 +36957,7 @@ id: ZFA:0009211 name: epinephrin secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "epinephrin secreting cells" EXACT PLURAL [] +synonym: "epinephrin secreting cells" EXACT OMO:0003004 [] xref: CL:0000454 xref: TAO:0009211 is_a: ZFA:0009212 ! biogenic amine secreting cell @@ -36970,7 +36969,7 @@ id: ZFA:0009212 name: biogenic amine secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "biogenic amine secreting cells" EXACT PLURAL [] +synonym: "biogenic amine secreting cells" EXACT OMO:0003004 [] xref: CL:0000457 xref: TAO:0009212 is_a: ZFA:0009096 ! endocrine cell @@ -36982,7 +36981,7 @@ id: ZFA:0009213 name: serotonin secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "serotin secreting cells" EXACT PLURAL [] +synonym: "serotin secreting cells" EXACT OMO:0003004 [] xref: CL:0000458 xref: TAO:0009213 is_a: ZFA:0009212 ! biogenic amine secreting cell @@ -36996,7 +36995,7 @@ namespace: zebrafish_anatomy def: "A cell capable of producting norepinephrine. Norepinephrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epinephrine is synthesized from norepinephrine by the actions of the phenylethanolamine N-methyltransferase enzyme." [CL:curator] subset: cell_slim synonym: " noradrenergic cell" EXACT [] -synonym: "norepinephrin secreting cells" EXACT PLURAL [] +synonym: "norepinephrin secreting cells" EXACT OMO:0003004 [] xref: CL:0000459 xref: TAO:0009214 is_a: ZFA:0009212 ! biogenic amine secreting cell @@ -37008,7 +37007,7 @@ id: ZFA:0009215 name: glucocorticoid secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "glucocorticoid secreting cells" EXACT PLURAL [] +synonym: "glucocorticoid secreting cells" EXACT OMO:0003004 [] xref: CL:0000460 xref: TAO:0009215 is_a: ZFA:0009106 ! steroid hormone secreting cell @@ -37038,7 +37037,7 @@ id: ZFA:0009217 name: digestive enzyme secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "digestive enzyme secreting cells" EXACT PLURAL [] +synonym: "digestive enzyme secreting cells" EXACT OMO:0003004 [] xref: CL:0000470 xref: TAO:0009217 is_a: ZFA:0009000 ! cell @@ -37067,7 +37066,7 @@ id: ZFA:0009219 name: visible light photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "visible light photoreceptor cells" EXACT PLURAL [] +synonym: "visible light photoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000488 xref: TAO:0009219 is_a: ZFA:0009127 ! photoreceptor cell @@ -37079,7 +37078,7 @@ id: ZFA:0009220 name: photopic photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "photopic photoreceptor cells" EXACT PLURAL [] +synonym: "photopic photoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000490 xref: TAO:0009220 is_a: ZFA:0009219 ! visible light photoreceptor cell @@ -37091,7 +37090,7 @@ id: ZFA:0009221 name: UV sensitive photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "UV sensitive photoreceptor cells" EXACT PLURAL [] +synonym: "UV sensitive photoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000494 xref: TAO:0009221 is_a: ZFA:0009127 ! photoreceptor cell @@ -37103,7 +37102,7 @@ id: ZFA:0009222 name: blue sensitive photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "blue sensitive photoreceptor cells" EXACT PLURAL [] +synonym: "blue sensitive photoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000495 xref: TAO:0009222 is_a: ZFA:0009220 ! photopic photoreceptor cell @@ -37115,7 +37114,7 @@ id: ZFA:0009223 name: green sensitive photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "green sensitive photoreceptor cells" EXACT PLURAL [] +synonym: "green sensitive photoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000496 xref: TAO:0009223 is_a: ZFA:0009220 ! photopic photoreceptor cell @@ -37127,7 +37126,7 @@ id: ZFA:0009224 name: red sensitive photoreceptor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "red sensitive photoreceptor cells" EXACT PLURAL [] +synonym: "red sensitive photoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000497 xref: TAO:0009224 is_a: ZFA:0009220 ! photopic photoreceptor cell @@ -37139,7 +37138,7 @@ id: ZFA:0009225 name: inhibitory interneuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "inhibitory interneurons" EXACT PLURAL [] +synonym: "inhibitory interneurons" EXACT OMO:0003004 [] xref: CL:0000498 xref: TAO:0009225 is_a: ZFA:0009051 ! interneuron @@ -37152,7 +37151,7 @@ name: stromal cell namespace: zebrafish_anatomy def: "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [CL:curator] subset: cell_slim -synonym: "stromal cells" EXACT PLURAL [] +synonym: "stromal cells" EXACT OMO:0003004 [] xref: CL:0000499 xref: TAO:0009226 is_a: ZFA:0009000 ! cell @@ -37166,7 +37165,7 @@ name: granulosa cell namespace: zebrafish_anatomy def: "A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors." [CL:curator] subset: cell_slim -synonym: "granulosa cells" EXACT PLURAL [] +synonym: "granulosa cells" EXACT OMO:0003004 [] xref: CL:0000501 xref: TAO:0009227 is_a: ZFA:0009106 ! steroid hormone secreting cell @@ -37179,7 +37178,7 @@ name: D cell namespace: zebrafish_anatomy def: "A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin." [CL:curator] subset: cell_slim -synonym: "D cells" EXACT PLURAL [] +synonym: "D cells" EXACT OMO:0003004 [] xref: CL:0000502 xref: TAO:0009228 is_a: ZFA:0009097 ! enteroendocrine cell @@ -37194,7 +37193,7 @@ name: theca cell namespace: zebrafish_anatomy def: "A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precursors of estrogens in the granulosa cells." [CL:curator] subset: cell_slim -synonym: "theca cells" EXACT PLURAL [] +synonym: "theca cells" EXACT OMO:0003004 [] xref: CL:0000503 xref: TAO:0009229 is_a: ZFA:0009226 ! stromal cell @@ -37207,7 +37206,7 @@ id: ZFA:0009230 name: substance P secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "substance P secreting cells" EXACT PLURAL [] +synonym: "substance P secreting cells" EXACT OMO:0003004 [] xref: CL:0000505 xref: TAO:0009230 is_a: ZFA:0009100 ! peptide hormone secreting cell @@ -37219,7 +37218,7 @@ id: ZFA:0009231 name: enkephalin secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "enkephalin secreting cells" EXACT PLURAL [] +synonym: "enkephalin secreting cells" EXACT OMO:0003004 [] xref: CL:0000506 xref: TAO:0009231 is_a: ZFA:0009232 ! endorphin secreting cell @@ -37231,7 +37230,7 @@ id: ZFA:0009232 name: endorphin secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "endorphin secreting cells" EXACT PLURAL [] +synonym: "endorphin secreting cells" EXACT OMO:0003004 [] xref: CL:0000507 xref: TAO:0009232 is_a: ZFA:0009100 ! peptide hormone secreting cell @@ -37243,7 +37242,7 @@ id: ZFA:0009233 name: paracrine cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "paracrine cells" EXACT PLURAL [] +synonym: "paracrine cells" EXACT OMO:0003004 [] xref: CL:0000512 xref: TAO:0009233 is_a: ZFA:0009000 ! cell @@ -37282,7 +37281,7 @@ name: skeletal muscle myoblast namespace: zebrafish_anatomy def: "A myoblast that differentiates into skeletal muscle fibers." [CL:curator] subset: cell_slim -synonym: "skeletal muscle myoblasts" EXACT PLURAL [] +synonym: "skeletal muscle myoblasts" EXACT OMO:0003004 [] xref: CL:0000515 xref: TAO:0009236 is_a: ZFA:0009025 ! myoblast @@ -37337,7 +37336,7 @@ name: nitrergic neuron namespace: zebrafish_anatomy def: "A nerve cell where transmission is mediated by nitric oxide." [CL:curator] subset: cell_slim -synonym: "nitrergic neurons" EXACT PLURAL [] +synonym: "nitrergic neurons" EXACT OMO:0003004 [] xref: CL:0000528 xref: TAO:0009240 is_a: ZFA:0009248 ! neuron @@ -37349,7 +37348,7 @@ id: ZFA:0009241 name: pigmented epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "pigmented epithelial cells" EXACT PLURAL [] +synonym: "pigmented epithelial cells" EXACT OMO:0003004 [] xref: CL:0000529 xref: TAO:0009241 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell @@ -37376,7 +37375,7 @@ name: CaP motoneuron namespace: zebrafish_anatomy def: "A primary motor neuron part of the spinal cord. The CaP motoneuron is found within 1 soma diameter of the ventral root. The axon of the CaP motoneuron extends ventrally from the ventral root, within the space between the notochord and the medial surface of the axial muscles. Below the notochord, the axon extends within the ventral median septum to the ventral edge of the axial muscles, where it turns dorsally and laterally to project over the lateral surface of the axial muscles." [ZFIN:ZDB-PUB-961014-272, ZFIN:ZDB-PUB-961014-649, ZFIN:ZDB-PUB-961014-814] subset: cell_slim -synonym: "CAP motoneurons" EXACT PLURAL [] +synonym: "CAP motoneurons" EXACT OMO:0003004 [] synonym: "caudal primary motoneuron" EXACT [] xref: CL:0000532 xref: TAO:0009243 @@ -37417,7 +37416,7 @@ id: ZFA:0009246 name: secondary neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "secondary neurons" EXACT PLURAL [] +synonym: "secondary neurons" EXACT OMO:0003004 [] xref: CL:0000535 xref: TAO:0009246 is_a: ZFA:0009248 ! neuron @@ -37461,7 +37460,7 @@ name: melanoblast namespace: zebrafish_anatomy def: "A cell that originates from the neural crest and differentiates into a pigment cell." [CL:curator] subset: cell_slim -synonym: "melanoblasts" EXACT PLURAL [] +synonym: "melanoblasts" EXACT OMO:0003004 [] xref: CL:0000541 xref: TAO:0009249 is_a: ZFA:0009000 ! cell @@ -37475,7 +37474,7 @@ name: lymphocyte namespace: zebrafish_anatomy def: "A cell of the B cell, T cell, or natural killer cell lineage." [ZFIN:ZDB-PUB-070221-3] subset: cell_slim -synonym: "lymphocytes" EXACT PLURAL [] +synonym: "lymphocytes" EXACT OMO:0003004 [] xref: CL:0000542 xref: TAO:0009250 is_a: ZFA:0009357 ! mononuclear cell @@ -37506,7 +37505,7 @@ name: reticulocyte namespace: zebrafish_anatomy def: "An immature erythrocyte showing a basophilic reticulum under vital staining." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim -synonym: "reticulocytes" EXACT PLURAL [] +synonym: "reticulocytes" EXACT OMO:0003004 [] xref: CL:0000558 xref: TAO:0009252 is_a: ZFA:0009044 ! blood cell @@ -37520,7 +37519,7 @@ name: promonocyte namespace: zebrafish_anatomy def: "A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim -synonym: "promonocytes" EXACT PLURAL [] +synonym: "promonocytes" EXACT OMO:0003004 [] xref: CL:0000559 xref: TAO:0009253 is_a: ZFA:0009356 ! myeloid lineage restricted progenitor cell @@ -37609,7 +37608,7 @@ name: cardiac mesenchymal cell namespace: zebrafish_anatomy def: "A mesenchymal cell found in the developing heart." [PMID:18816864] subset: cell_slim -synonym: "cardiac mesenchymal cells" EXACT PLURAL [] +synonym: "cardiac mesenchymal cells" EXACT OMO:0003004 [] xref: CL:0000569 xref: TAO:0009259 is_a: ZFA:0009000 ! cell @@ -37653,7 +37652,7 @@ name: retinal cone cell namespace: zebrafish_anatomy def: "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision." [CL:curator] subset: cell_slim -synonym: "retinal cone cells" EXACT PLURAL [] +synonym: "retinal cone cells" EXACT OMO:0003004 [] xref: CL:0000573 xref: TAO:0009262 is_a: ZFA:0009154 ! eye photoreceptor cell @@ -37666,7 +37665,7 @@ name: erythrophore namespace: zebrafish_anatomy def: "A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance." [CL:curator] subset: cell_slim -synonym: "erythrophores" EXACT PLURAL [] +synonym: "erythrophores" EXACT OMO:0003004 [] xref: CL:0000574 xref: TAO:0009263 is_a: ZFA:0009090 ! pigment cell @@ -37680,7 +37679,7 @@ id: ZFA:0009264 name: corneal epithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "corneal epithelial cells" EXACT PLURAL [] +synonym: "corneal epithelial cells" EXACT OMO:0003004 [] xref: CL:0000575 xref: TAO:0009264 is_a: ZFA:0009039 ! squamous epithelial cell @@ -37693,7 +37692,7 @@ name: monocyte namespace: zebrafish_anatomy def: "Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells." [CL:curator] subset: cell_slim -synonym: "monocytes" EXACT PLURAL [] +synonym: "monocytes" EXACT OMO:0003004 [] xref: CL:0000576 xref: TAO:0009265 is_a: ZFA:0009064 ! mononuclear phagocyte @@ -37708,7 +37707,7 @@ name: neutrophilic myelocyte namespace: zebrafish_anatomy def: "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, differentiation of cytoplasmic granules has begun." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim -synonym: "neutrophilic myelocytes" EXACT PLURAL [] +synonym: "neutrophilic myelocytes" EXACT OMO:0003004 [] xref: CL:0000580 xref: TAO:0009266 is_a: ZFA:0009328 ! immature neutrophil @@ -37722,7 +37721,7 @@ name: peritoneal macrophage namespace: zebrafish_anatomy def: "A macrophage resident in the peritoneum under non-inlfammatory conditions." [CL:curator] subset: cell_slim -synonym: "peritoneal macrophages" EXACT PLURAL [] +synonym: "peritoneal macrophages" EXACT OMO:0003004 [] xref: CL:0000581 xref: TAO:0009267 is_a: ZFA:0009141 ! macrophage @@ -37749,7 +37748,7 @@ name: enterocyte namespace: zebrafish_anatomy def: "An epithelial cell that has its apical plasma membrane folded into microvilli to provide ample surface for the absorption of nutrients from the intestinal lumen." [SANBI:curator] subset: cell_slim -synonym: "enterocytes" EXACT PLURAL [] +synonym: "enterocytes" EXACT OMO:0003004 [] xref: CL:0000584 xref: TAO:0009269 is_a: ZFA:0009143 ! brush border epithelial cell @@ -37763,7 +37762,7 @@ name: odontoclast namespace: zebrafish_anatomy def: "A specialized osteoclast associated with the absorption and removal of cementum." [CL:curator] subset: cell_slim -synonym: "odontoclasts" EXACT PLURAL [] +synonym: "odontoclasts" EXACT OMO:0003004 [] xref: CL:0000588 xref: TAO:0009270 is_a: ZFA:0009047 ! osteoclast @@ -37775,7 +37774,7 @@ id: ZFA:0009271 name: androgen secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "androgen secreting cells" EXACT PLURAL [] +synonym: "androgen secreting cells" EXACT OMO:0003004 [] xref: CL:0000593 xref: TAO:0009271 is_a: ZFA:0009106 ! steroid hormone secreting cell @@ -37788,7 +37787,7 @@ name: skeletal muscle satellite cell namespace: zebrafish_anatomy def: "An elongated, spindle-shaped, quiescent myoblast lying in close contact with adult skeletal muscle. They are thought to play a role in muscle repair and regeneration." [CL:curator] subset: cell_slim -synonym: "skeletal muscle satellite cells" EXACT PLURAL [] +synonym: "skeletal muscle satellite cells" EXACT OMO:0003004 [] xref: CL:0000594 xref: TAO:0009272 is_a: ZFA:0009236 ! skeletal muscle myoblast @@ -37801,7 +37800,7 @@ name: pyramidal cell namespace: zebrafish_anatomy def: "A projection neuron in the cerebral cortex and the hippocampus. Pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their cortical region." [CL:curator] subset: cell_slim -synonym: "pyramidal cells" EXACT PLURAL [] +synonym: "pyramidal cells" EXACT OMO:0003004 [] xref: CL:0000598 xref: TAO:0009273 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) @@ -37814,7 +37813,7 @@ name: pressoreceptor cell namespace: zebrafish_anatomy def: "A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls." [CL:curator] subset: cell_slim -synonym: "pressoreceptor cells" EXACT PLURAL [] +synonym: "pressoreceptor cells" EXACT OMO:0003004 [] xref: CL:0000602 xref: TAO:0009274 is_a: ZFA:0009370 ! stretch receptor cell @@ -37827,7 +37826,7 @@ name: retinal rod cell namespace: zebrafish_anatomy def: "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision." [CL:curator] subset: cell_slim -synonym: "retinal rod cells" EXACT PLURAL [] +synonym: "retinal rod cells" EXACT OMO:0003004 [] xref: CL:0000604 xref: TAO:0009275 is_a: ZFA:0009154 ! eye photoreceptor cell @@ -37840,7 +37839,7 @@ name: GABAergic neuron namespace: zebrafish_anatomy def: "A neuron that uses GABA as a vesicular neurotransmitter." [GOC:tfm] subset: cell_slim -synonym: "GABAergic neurons" EXACT PLURAL [] +synonym: "GABAergic neurons" EXACT OMO:0003004 [] xref: CL:0000617 xref: TAO:0009276 is_a: ZFA:0009248 ! neuron @@ -37853,7 +37852,7 @@ name: acinar cell namespace: zebrafish_anatomy def: "A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus)." [GOC:tfm] subset: cell_slim -synonym: "acinar cells" EXACT PLURAL [] +synonym: "acinar cells" EXACT OMO:0003004 [] xref: CL:0000622 xref: TAO:0009277 is_a: ZFA:0009000 ! cell @@ -37897,7 +37896,7 @@ namespace: zebrafish_anatomy def: "Glial cell of the retina that forms a support structure stretching radially across the thickness of the retina. Muller cell bodies are found in the inner nuclear layer and send projection to the outer limiting membrane and inner limiting membrane." [GOC:cvs, GOC:ymb, http://webvision.med.utah.edu/book/part-ii-anatomy-and-physiology-of-the-retina/glial-cells-of-the-retina/, ORCiD:0000-0002-2244-7917, ORCiD:0000-0002-9900-7880] subset: cell_slim synonym: "Mueller cell" EXACT [ZFIN:ZDB-PUB-150220-2] -synonym: "Muller cells" EXACT PLURAL [] +synonym: "Muller cells" EXACT OMO:0003004 [] xref: CL:0000636 xref: TAO:0009280 is_a: ZFA:0009075 ! astrocyte @@ -37911,7 +37910,7 @@ name: folliculostellate cell namespace: zebrafish_anatomy def: "A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones." [CL:curator] subset: cell_slim -synonym: "folliculostellate cells" EXACT PLURAL [] +synonym: "folliculostellate cells" EXACT OMO:0003004 [] xref: CL:0000642 xref: TAO:0009281 is_a: ZFA:0009096 ! endocrine cell @@ -37924,7 +37923,7 @@ id: ZFA:0009282 name: Bergmann glial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "Bergmann glial cells" EXACT PLURAL [] +synonym: "Bergmann glial cells" EXACT OMO:0003004 [] xref: CL:0000644 xref: TAO:0009282 is_a: ZFA:0009075 ! astrocyte @@ -37936,7 +37935,7 @@ id: ZFA:0009283 name: mesangial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "mesangial cells" EXACT PLURAL [] +synonym: "mesangial cells" EXACT OMO:0003004 [] xref: CL:0000650 xref: TAO:0009283 is_a: ZFA:0009000 ! cell @@ -37949,7 +37948,7 @@ id: ZFA:0009284 name: pinealocyte namespace: zebrafish_anatomy subset: cell_slim -synonym: "pinealocytes" EXACT PLURAL [] +synonym: "pinealocytes" EXACT OMO:0003004 [] xref: CL:0000652 xref: TAO:0009284 is_a: ZFA:0009096 ! endocrine cell @@ -37962,7 +37961,7 @@ id: ZFA:0009285 name: podocyte namespace: zebrafish_anatomy subset: cell_slim -synonym: "podocytes" EXACT PLURAL [] +synonym: "podocytes" EXACT OMO:0003004 [] xref: CL:0000653 xref: TAO:0009285 is_a: ZFA:0009034 ! epithelial cell @@ -37987,7 +37986,7 @@ id: ZFA:0009287 name: collagen secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "collagen secreting cells" EXACT PLURAL [] +synonym: "collagen secreting cells" EXACT OMO:0003004 [] xref: CL:0000667 xref: TAO:0009287 is_a: ZFA:0009162 ! extracellular matrix secreting cell @@ -38016,7 +38015,7 @@ name: gut absorptive cell namespace: zebrafish_anatomy def: "Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules." [CL:curator] subset: cell_slim -synonym: "gut absorptive cells" EXACT PLURAL [] +synonym: "gut absorptive cells" EXACT OMO:0003004 [] xref: CL:0000677 xref: TAO:0009289 is_a: ZFA:0009129 ! absorptive cell @@ -38029,7 +38028,7 @@ id: ZFA:0009290 name: glutamatergic neuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "glutamatergic neurons" EXACT PLURAL [] +synonym: "glutamatergic neurons" EXACT OMO:0003004 [] xref: CL:0000679 xref: TAO:0009290 is_a: ZFA:0009248 ! neuron @@ -38041,7 +38040,7 @@ id: ZFA:0009291 name: muscle precursor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "muscle precursor cells" EXACT PLURAL [] +synonym: "muscle precursor cells" EXACT OMO:0003004 [] xref: CL:0000680 xref: TAO:0009291 is_a: ZFA:0009000 ! cell @@ -38056,7 +38055,7 @@ name: radial glial cell namespace: zebrafish_anatomy def: "A transient cell present only in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration." [CL:curator] subset: cell_slim -synonym: "radial glial cells" EXACT PLURAL [] +synonym: "radial glial cells" EXACT OMO:0003004 [] xref: CL:0000681 xref: TAO:0009292 is_a: ZFA:0009168 ! neuroblast (sensu Vertebrata) @@ -38071,7 +38070,7 @@ name: M cell namespace: zebrafish_anatomy def: "An absorptive cell of the mammalian gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes." [CL:curator] subset: cell_slim -synonym: "M cells" EXACT PLURAL [] +synonym: "M cells" EXACT OMO:0003004 [] xref: CL:0000682 xref: TAO:0009293 is_a: ZFA:0009034 ! epithelial cell @@ -38084,7 +38083,7 @@ name: ependymoglial cell namespace: zebrafish_anatomy def: "A cell that transports hormones from neurosecretory cells." [CL:curator] subset: cell_slim -synonym: "ependymoglial cells" EXACT PLURAL [] +synonym: "ependymoglial cells" EXACT OMO:0003004 [] xref: CL:0000683 xref: TAO:0009294 is_a: ZFA:0009075 ! astrocyte @@ -38096,7 +38095,7 @@ id: ZFA:0009295 name: cerebrospinal fluid secreting cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "cerebrospinal fluid secreting cells" EXACT PLURAL [] +synonym: "cerebrospinal fluid secreting cells" EXACT OMO:0003004 [] xref: CL:0000686 xref: TAO:0009295 is_a: ZFA:0009038 ! columnar/cuboidal epithelial cell @@ -38110,7 +38109,7 @@ name: perijunctional fibroblast namespace: zebrafish_anatomy def: "A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina." [CL:curator] subset: cell_slim -synonym: "perijunctional fibroblasts" EXACT PLURAL [] +synonym: "perijunctional fibroblasts" EXACT OMO:0003004 [] xref: CL:0000688 xref: TAO:0009296 is_a: ZFA:0009026 ! fibroblast @@ -38122,7 +38121,7 @@ id: ZFA:0009297 name: stellate interneuron namespace: zebrafish_anatomy subset: cell_slim -synonym: "stellate interneurons" EXACT PLURAL [] +synonym: "stellate interneurons" EXACT OMO:0003004 [] xref: CL:0000691 xref: TAO:0009297 is_a: ZFA:0009051 ! interneuron @@ -38135,7 +38134,7 @@ name: terminal Schwann cell namespace: zebrafish_anatomy def: "A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse." [CL:curator] subset: cell_slim -synonym: "terminal Schwann cells" EXACT PLURAL [] +synonym: "terminal Schwann cells" EXACT OMO:0003004 [] xref: CL:0000692 xref: TAO:0009298 is_a: ZFA:0009000 ! cell @@ -38163,7 +38162,7 @@ name: Cajal-Retzius cell namespace: zebrafish_anatomy def: "One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene." [CL:curator] subset: cell_slim -synonym: "Cajal-Retzius cells" EXACT PLURAL [] +synonym: "Cajal-Retzius cells" EXACT OMO:0003004 [] xref: CL:0000695 xref: TAO:0009300 is_a: ZFA:0009067 ! CNS neuron (sensu Vertebrata) @@ -38176,7 +38175,7 @@ name: dopaminergic neuron namespace: zebrafish_anatomy def: "A neuron that releases dopamine as a neurotransmitter." [CL:dhill] subset: cell_slim -synonym: "dopaminergic neurons" EXACT PLURAL [] +synonym: "dopaminergic neurons" EXACT OMO:0003004 [] xref: CL:0000700 xref: TAO:0009301 is_a: ZFA:0009248 ! neuron @@ -38189,7 +38188,7 @@ name: sustentacular cell namespace: zebrafish_anatomy def: "Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors." [CL:curator] subset: cell_slim -synonym: "sustentacular cells" EXACT PLURAL [] +synonym: "sustentacular cells" EXACT OMO:0003004 [] xref: CL:0000703 xref: TAO:0009302 is_a: ZFA:0009000 ! cell @@ -38202,7 +38201,7 @@ name: endothelial tip cell namespace: zebrafish_anatomy def: "A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels." [CL:curator] subset: cell_slim -synonym: "endothelial tip cells" EXACT PLURAL [] +synonym: "endothelial tip cells" EXACT OMO:0003004 [] xref: CL:0000704 xref: TAO:0009303 is_a: ZFA:0009036 ! blood vessel endothelial cell @@ -38215,7 +38214,7 @@ name: choroid plexus epithelial cell namespace: zebrafish_anatomy def: "Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord." [CL:curator] subset: cell_slim -synonym: "choroid plexus epithelial cells" EXACT PLURAL [] +synonym: "choroid plexus epithelial cells" EXACT OMO:0003004 [] xref: CL:0000706 xref: TAO:0009304 is_a: ZFA:0009033 ! ependymal cell @@ -38230,7 +38229,7 @@ namespace: zebrafish_anatomy def: "Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [CL:curator] subset: cell_slim synonym: "leptomemingeal cell" RELATED [] -synonym: "leptomeningeal cells" EXACT PLURAL [] +synonym: "leptomeningeal cells" EXACT OMO:0003004 [] xref: CL:0000708 xref: TAO:0009305 is_a: ZFA:0009162 ! extracellular matrix secreting cell @@ -38242,7 +38241,7 @@ id: ZFA:0009306 name: neuroepithelial cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "neuroepithelial cells" EXACT PLURAL [] +synonym: "neuroepithelial cells" EXACT OMO:0003004 [] xref: CL:0000710 xref: TAO:0009306 is_a: ZFA:0009000 ! cell @@ -38257,7 +38256,7 @@ namespace: zebrafish_anatomy def: "A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:cjm] comment: Definition originally referred to GO:0048103. Changed to GOC: CJM to match other references. subset: cell_slim -synonym: "somatic stem cells" EXACT PLURAL [] +synonym: "somatic stem cells" EXACT OMO:0003004 [] xref: CL:0000723 xref: TAO:0009307 is_a: ZFA:0005957 ! stem cell @@ -38270,7 +38269,7 @@ name: urothelial cell namespace: zebrafish_anatomy def: "A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [CL:curator] subset: cell_slim -synonym: "urothelial cells" EXACT PLURAL [] +synonym: "urothelial cells" EXACT OMO:0003004 [] xref: CL:0000731 xref: TAO:0009308 is_a: ZFA:0009034 ! epithelial cell @@ -38329,7 +38328,7 @@ name: periarticular chondrocyte namespace: zebrafish_anatomy def: "A round chondrocyte that first differentiates in the late embryonic growth plate of bone." [CL:curator] subset: cell_slim -synonym: "periarticular chondrocytes" EXACT PLURAL [] +synonym: "periarticular chondrocytes" EXACT OMO:0003004 [] xref: CL:0000742 xref: TAO:0009312 is_a: ZFA:0009084 ! chondrocyte @@ -38342,7 +38341,7 @@ name: hypertrophic chondrocyte namespace: zebrafish_anatomy def: "A terminally differentiated chondrocyte that differentiates in the late embryonic growth plate of bone." [CL:curator] subset: cell_slim -synonym: "hypertrophic chondrocytes" EXACT PLURAL [] +synonym: "hypertrophic chondrocytes" EXACT OMO:0003004 [] xref: CL:0000743 xref: TAO:0009313 is_a: ZFA:0009084 ! chondrocyte @@ -38355,7 +38354,7 @@ name: columnar chondrocyte namespace: zebrafish_anatomy def: "A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate." [CL:curator] subset: cell_slim -synonym: "columnar chondrocytes" EXACT PLURAL [] +synonym: "columnar chondrocytes" EXACT OMO:0003004 [] xref: CL:0000744 xref: TAO:0009314 is_a: ZFA:0009084 ! chondrocyte @@ -38368,7 +38367,7 @@ name: horizontal cell namespace: zebrafish_anatomy def: "A neuron that laterally connects other neurons in the inner nuclear layer of the retina." [ZFIN:ZDB-PUB-070221-6] subset: cell_slim -synonym: "horizontal cells" EXACT PLURAL [] +synonym: "horizontal cells" EXACT OMO:0003004 [] xref: CL:0000745 xref: TAO:0009315 is_a: ZFA:0009051 ! interneuron @@ -38381,7 +38380,7 @@ id: ZFA:0009316 name: cardiac muscle cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "cardiac muscle cells" EXACT PLURAL [] +synonym: "cardiac muscle cells" EXACT OMO:0003004 [] synonym: "cardiac myocyte" EXACT [] synonym: "cardiomyocyte" EXACT [] xref: CL:0000746 @@ -38426,7 +38425,7 @@ name: ON-bipolar cell namespace: zebrafish_anatomy def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors." [CL:curator] subset: cell_slim -synonym: "ON-bipolar cells" EXACT PLURAL [] +synonym: "ON-bipolar cells" EXACT OMO:0003004 [] xref: CL:0000749 xref: TAO:0009319 is_a: ZFA:0009318 ! retinal bipolar neuron @@ -38439,7 +38438,7 @@ name: OFF-bipolar cell namespace: zebrafish_anatomy def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors." [CL:curator] subset: cell_slim -synonym: "OFF-bipolar cells" EXACT PLURAL [] +synonym: "OFF-bipolar cells" EXACT OMO:0003004 [] xref: CL:0000750 xref: TAO:0009320 is_a: ZFA:0009318 ! retinal bipolar neuron @@ -38452,7 +38451,7 @@ name: rod bipolar cell namespace: zebrafish_anatomy def: "A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer." [CL:curator] subset: cell_slim -synonym: "rod bipolar cells" EXACT PLURAL [] +synonym: "rod bipolar cells" EXACT OMO:0003004 [] xref: CL:0000751 xref: TAO:0009321 is_a: ZFA:0009318 ! retinal bipolar neuron @@ -38466,7 +38465,7 @@ name: cone retinal bipolar cell namespace: zebrafish_anatomy def: "A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer." [CL:curator] subset: cell_slim -synonym: "cone retinal bipolar cells" EXACT PLURAL [] +synonym: "cone retinal bipolar cells" EXACT OMO:0003004 [] xref: CL:0000752 xref: TAO:0009322 is_a: ZFA:0009318 ! retinal bipolar neuron @@ -38480,7 +38479,7 @@ namespace: zebrafish_anatomy def: "A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates." [CL:curator] comment: Note that this is a non-mammalian cell type. Use platelet ; CL:0000233 for thrombocytes (platelets) in mammals. subset: cell_slim -synonym: "thrombocytes" EXACT PLURAL [] +synonym: "thrombocytes" EXACT OMO:0003004 [] xref: CL:0000762 xref: TAO:0009323 is_a: ZFA:0009044 ! blood cell @@ -38495,7 +38494,7 @@ name: myeloid cell namespace: zebrafish_anatomy def: "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage." [CL:curator] subset: cell_slim -synonym: "myeloid cells" EXACT PLURAL [] +synonym: "myeloid cells" EXACT OMO:0003004 [] xref: CL:0000763 xref: TAO:0009324 is_a: ZFA:0005830 ! hematopoietic cell @@ -38509,7 +38508,7 @@ name: erythroid lineage cell namespace: zebrafish_anatomy def: "A immature or mature cell in the lineage leading to and including erythrocytes." [CL:curator] subset: cell_slim -synonym: "erythroid lineage cells" EXACT PLURAL [] +synonym: "erythroid lineage cells" EXACT OMO:0003004 [] xref: CL:0000764 xref: TAO:0009325 is_a: ZFA:0009324 ! myeloid cell @@ -38522,7 +38521,7 @@ name: myeloid leukocyte namespace: zebrafish_anatomy def: "A cell of the monocyte, granulocyte, or mast cell lineage." [CL:curator] subset: cell_slim -synonym: "myeloid leukocytes" EXACT PLURAL [] +synonym: "myeloid leukocytes" EXACT OMO:0003004 [] xref: CL:0000766 xref: TAO:0009326 is_a: ZFA:0009309 ! leukocyte @@ -38577,7 +38576,7 @@ name: mononuclear osteoclast namespace: zebrafish_anatomy def: "A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts." [CL:curator] subset: cell_slim -synonym: "mononuclear osteoclasts" EXACT PLURAL [] +synonym: "mononuclear osteoclasts" EXACT OMO:0003004 [] xref: CL:0000778 xref: TAO:0009329 is_a: ZFA:0009047 ! osteoclast @@ -38591,7 +38590,7 @@ name: mononuclear odontoclast namespace: zebrafish_anatomy def: "A specialized mononuclear osteoclast associated with the absorption and removal of cementum." [CL:curator] subset: cell_slim -synonym: "mononuclear odontoclasts" EXACT PLURAL [] +synonym: "mononuclear odontoclasts" EXACT OMO:0003004 [] xref: CL:0000781 xref: TAO:0009330 is_a: ZFA:0009270 ! odontoclast @@ -38900,7 +38899,7 @@ namespace: zebrafish_anatomy def: "A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates." [CL:curator] comment: Note that this is a non-mammalian cell type. subset: cell_slim -synonym: "thromboblasts" EXACT PLURAL [] +synonym: "thromboblasts" EXACT OMO:0003004 [] xref: CL:0000828 xref: TAO:0009351 is_a: ZFA:0009356 ! myeloid lineage restricted progenitor cell @@ -38927,7 +38926,7 @@ name: myeloblast namespace: zebrafish_anatomy def: "The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm." [ZFIN:ZDB-PUB-070221-1] subset: cell_slim -synonym: "myeloblasts" EXACT PLURAL [] +synonym: "myeloblasts" EXACT OMO:0003004 [] xref: CL:0000835 xref: TAO:0009353 is_a: ZFA:0009356 ! myeloid lineage restricted progenitor cell @@ -38958,7 +38957,7 @@ namespace: zebrafish_anatomy def: "A progenitor cell restricted to the lymphoid lineage." [CL:curator, PMID:19022770] comment: Note that this is a class of cell types, not an identified single cell type. subset: cell_slim -synonym: "lymphoid progenitor cells" EXACT PLURAL [] +synonym: "lymphoid progenitor cells" EXACT OMO:0003004 [] xref: CL:0000838 xref: TAO:0009355 is_a: ZFA:0005830 ! hematopoietic cell @@ -38973,7 +38972,7 @@ def: "A progenitor cell restricted to the myeloid lineage." [CL:curator, PMID:19 comment: Note that this is a class of cell types, not an identified single cell type. subset: cell_slim synonym: "myeloid progenitor cell" RELATED [] -synonym: "myeloid progenitor cells" EXACT PLURAL [] +synonym: "myeloid progenitor cells" EXACT OMO:0003004 [] xref: CL:0000839 xref: TAO:0009356 is_a: ZFA:0005830 ! hematopoietic cell @@ -38986,7 +38985,7 @@ name: mononuclear cell namespace: zebrafish_anatomy def: "A leukocyte with a single non-segmented nucleus in the mature form." [CL:curator] subset: cell_slim -synonym: "mononuclear cells" EXACT PLURAL [] +synonym: "mononuclear cells" EXACT OMO:0003004 [] xref: CL:0000842 xref: TAO:0009357 is_a: ZFA:0009309 ! leukocyte @@ -39061,7 +39060,7 @@ name: neuromast mantle cell namespace: zebrafish_anatomy def: "Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded." [ZFIN:ZDB-PUB-070221-7] subset: cell_slim -synonym: "neuromast mantle cells" EXACT PLURAL [] +synonym: "neuromast mantle cells" EXACT OMO:0003004 [] xref: CL:0000851 xref: TAO:0009362 is_a: ZFA:0009000 ! cell @@ -39075,7 +39074,7 @@ name: neuromast support cell namespace: zebrafish_anatomy def: "Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells." [ZFIN:ZDB-PUB-070221-7] subset: cell_slim -synonym: "neuromast support cells" EXACT PLURAL [] +synonym: "neuromast support cells" EXACT OMO:0003004 [] xref: CL:0000852 xref: TAO:0009363 is_a: ZFA:0009000 ! cell @@ -39102,7 +39101,7 @@ name: interneuromast cell namespace: zebrafish_anatomy def: "Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts." [CL:curator] subset: cell_slim -synonym: "interneuromast cells" EXACT PLURAL [] +synonym: "interneuromast cells" EXACT OMO:0003004 [] xref: CL:0000854 xref: TAO:0009365 is_a: ZFA:0009080 ! neurectodermal cell @@ -39117,7 +39116,7 @@ name: hair cell namespace: zebrafish_anatomy def: "Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [CL:curator] subset: cell_slim -synonym: "hair cells" EXACT PLURAL [] +synonym: "hair cells" EXACT OMO:0003004 [] xref: CL:0000855 xref: TAO:0009366 is_a: ZFA:0009120 ! mechanoreceptor cell @@ -39130,7 +39129,7 @@ name: neuromast hair cell namespace: zebrafish_anatomy def: "Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface." [CL:curator] subset: cell_slim -synonym: "neuromast hair cells" EXACT PLURAL [] +synonym: "neuromast hair cells" EXACT OMO:0003004 [] xref: CL:0000856 xref: TAO:0009367 is_a: ZFA:0009366 ! hair cell @@ -39144,7 +39143,7 @@ name: slow muscle myoblast namespace: zebrafish_anatomy def: "A skeletal muscle myoblast that differentiates into slow muscle fibers." [CL:curator] subset: cell_slim -synonym: "slow muscle myoblasts" EXACT PLURAL [] +synonym: "slow muscle myoblasts" EXACT OMO:0003004 [] xref: CL:0000857 xref: TAO:0009368 is_a: ZFA:0009236 ! skeletal muscle myoblast @@ -39157,7 +39156,7 @@ name: fast muscle myoblast namespace: zebrafish_anatomy def: "A skeletal muscle myoblast that differentiates into fast muscle fibers." [CL:curator] subset: cell_slim -synonym: "fast muscle myoblasts" EXACT PLURAL [] +synonym: "fast muscle myoblasts" EXACT OMO:0003004 [] xref: CL:0000858 xref: TAO:0009369 is_a: ZFA:0009236 ! skeletal muscle myoblast @@ -39169,7 +39168,7 @@ id: ZFA:0009370 name: stretch receptor cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "stretch receptor cells" EXACT PLURAL [] +synonym: "stretch receptor cells" EXACT OMO:0003004 [] xref: CL:1000082 xref: TAO:0009370 is_a: ZFA:0009001 ! receptor cell (sensu Animalia) @@ -39181,7 +39180,7 @@ id: ZFA:0009371 name: stratified keratinized epithelial stem cell namespace: zebrafish_anatomy subset: cell_slim -synonym: "stratified keratinized epithelial stem cells" EXACT PLURAL [] +synonym: "stratified keratinized epithelial stem cells" EXACT OMO:0003004 [] xref: CL:1000083 xref: TAO:0009371 is_a: ZFA:0009180 ! stratified epithelial stem cell