From 2babb0f0ae4ac96dfb0e294fe02655d618a560c5 Mon Sep 17 00:00:00 2001 From: Cheng Yong Tham <25361260+cytham@users.noreply.github.com> Date: Mon, 29 Apr 2024 22:57:50 +0800 Subject: [PATCH] V1.6.2 (#82) * Fix sup alignment seq bug * remove logging * Update CHANGELOG.txt --- CHANGELOG.txt | 4 + nanovar/nv_bam_parser.c | 13756 +++++++++++++++++++++++------------- nanovar/nv_bam_parser.pyx | 8 +- nanovar/version.py | 2 +- 4 files changed, 8945 insertions(+), 4825 deletions(-) diff --git a/CHANGELOG.txt b/CHANGELOG.txt index c1c16b5..2768eec 100644 --- a/CHANGELOG.txt +++ b/CHANGELOG.txt @@ -4,6 +4,10 @@ NanoVar Changelog Release Summary: +Version 1.6.2 - Apr 29, 2024 + * Fixed bug where some supplementary alignments do not have primary alignments, in the case of a subsample BAM input + + Version 1.6.1 - Mar 30, 2024 * Fix Tensorflow 2.16 compatibility issue, restrict tensorflow-cpu<=2.15.1 in setup.py diff --git a/nanovar/nv_bam_parser.c b/nanovar/nv_bam_parser.c index 6bd5a77..4a54910 100644 --- a/nanovar/nv_bam_parser.c +++ b/nanovar/nv_bam_parser.c @@ -1,22 +1,51 @@ -/* Generated by Cython 0.29.33 */ +/* Generated by Cython 3.0.10 */ + +/* BEGIN: Cython Metadata +{ + "distutils": { + "name": "nanovar.nv_bam_parser", + "sources": [ + "/home/cy/programs/nanovar/nanovar/nv_bam_parser.pyx" + ] + }, + "module_name": "nanovar.nv_bam_parser" +} +END: Cython Metadata */ #ifndef PY_SSIZE_T_CLEAN #define PY_SSIZE_T_CLEAN #endif /* PY_SSIZE_T_CLEAN */ +#if defined(CYTHON_LIMITED_API) && 0 + #ifndef Py_LIMITED_API + #if CYTHON_LIMITED_API+0 > 0x03030000 + #define Py_LIMITED_API CYTHON_LIMITED_API + #else + #define Py_LIMITED_API 0x03030000 + #endif + #endif +#endif + #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. -#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000) - #error Cython requires Python 2.6+ or Python 3.3+. +#elif PY_VERSION_HEX < 0x02070000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000) + #error Cython requires Python 2.7+ or Python 3.3+. #else -#define CYTHON_ABI "0_29_33" -#define CYTHON_HEX_VERSION 0x001D21F0 -#define CYTHON_FUTURE_DIVISION 0 +#if defined(CYTHON_LIMITED_API) && CYTHON_LIMITED_API +#define __PYX_EXTRA_ABI_MODULE_NAME "limited" +#else +#define __PYX_EXTRA_ABI_MODULE_NAME "" +#endif +#define CYTHON_ABI "3_0_10" __PYX_EXTRA_ABI_MODULE_NAME +#define __PYX_ABI_MODULE_NAME "_cython_" CYTHON_ABI +#define __PYX_TYPE_MODULE_PREFIX __PYX_ABI_MODULE_NAME "." +#define CYTHON_HEX_VERSION 0x03000AF0 +#define CYTHON_FUTURE_DIVISION 1 #include #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif -#if !defined(WIN32) && !defined(MS_WINDOWS) +#if !defined(_WIN32) && !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall #define __stdcall #endif @@ -35,9 +64,7 @@ #endif #define __PYX_COMMA , #ifndef HAVE_LONG_LONG - #if PY_VERSION_HEX >= 0x02070000 - #define HAVE_LONG_LONG - #endif + #define HAVE_LONG_LONG #endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG @@ -45,13 +72,19 @@ #ifndef Py_HUGE_VAL #define Py_HUGE_VAL HUGE_VAL #endif -#ifdef PYPY_VERSION - #define CYTHON_COMPILING_IN_PYPY 1 - #define CYTHON_COMPILING_IN_PYSTON 0 +#define __PYX_LIMITED_VERSION_HEX PY_VERSION_HEX +#if defined(GRAALVM_PYTHON) + /* For very preliminary testing purposes. Most variables are set the same as PyPy. + The existence of this section does not imply that anything works or is even tested */ + #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 0 + #define CYTHON_COMPILING_IN_LIMITED_API 0 + #define CYTHON_COMPILING_IN_GRAAL 1 #define CYTHON_COMPILING_IN_NOGIL 0 #undef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_TYPE_SPECS + #define CYTHON_USE_TYPE_SPECS 0 #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #if PY_VERSION_HEX < 0x03050000 @@ -76,10 +109,19 @@ #define CYTHON_UNPACK_METHODS 0 #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_GIL + #define CYTHON_FAST_GIL 0 + #undef CYTHON_METH_FASTCALL + #define CYTHON_METH_FASTCALL 0 #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 + #ifndef CYTHON_PEP487_INIT_SUBCLASS + #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) + #endif #undef CYTHON_PEP489_MULTI_PHASE_INIT - #define CYTHON_PEP489_MULTI_PHASE_INIT 0 + #define CYTHON_PEP489_MULTI_PHASE_INIT 1 + #undef CYTHON_USE_MODULE_STATE + #define CYTHON_USE_MODULE_STATE 0 #undef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE 0 #undef CYTHON_USE_DICT_VERSIONS @@ -89,44 +131,125 @@ #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 #endif -#elif defined(PYSTON_VERSION) - #define CYTHON_COMPILING_IN_PYPY 0 - #define CYTHON_COMPILING_IN_PYSTON 1 + #undef CYTHON_USE_FREELISTS + #define CYTHON_USE_FREELISTS 0 +#elif defined(PYPY_VERSION) + #define CYTHON_COMPILING_IN_PYPY 1 #define CYTHON_COMPILING_IN_CPYTHON 0 + #define CYTHON_COMPILING_IN_LIMITED_API 0 + #define CYTHON_COMPILING_IN_GRAAL 0 #define CYTHON_COMPILING_IN_NOGIL 0 - #ifndef CYTHON_USE_TYPE_SLOTS - #define CYTHON_USE_TYPE_SLOTS 1 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #ifndef CYTHON_USE_TYPE_SPECS + #define CYTHON_USE_TYPE_SPECS 0 + #endif + #undef CYTHON_USE_PYTYPE_LOOKUP + #define CYTHON_USE_PYTYPE_LOOKUP 0 + #if PY_VERSION_HEX < 0x03050000 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #undef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 1 + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_GIL + #define CYTHON_FAST_GIL 0 + #undef CYTHON_METH_FASTCALL + #define CYTHON_METH_FASTCALL 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 + #ifndef CYTHON_PEP487_INIT_SUBCLASS + #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) #endif + #if PY_VERSION_HEX < 0x03090000 + #undef CYTHON_PEP489_MULTI_PHASE_INIT + #define CYTHON_PEP489_MULTI_PHASE_INIT 0 + #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) + #define CYTHON_PEP489_MULTI_PHASE_INIT 1 + #endif + #undef CYTHON_USE_MODULE_STATE + #define CYTHON_USE_MODULE_STATE 0 + #undef CYTHON_USE_TP_FINALIZE + #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1 && PYPY_VERSION_NUM >= 0x07030C00) + #undef CYTHON_USE_DICT_VERSIONS + #define CYTHON_USE_DICT_VERSIONS 0 + #undef CYTHON_USE_EXC_INFO_STACK + #define CYTHON_USE_EXC_INFO_STACK 0 + #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC + #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 + #endif + #undef CYTHON_USE_FREELISTS + #define CYTHON_USE_FREELISTS 0 +#elif defined(CYTHON_LIMITED_API) + #ifdef Py_LIMITED_API + #undef __PYX_LIMITED_VERSION_HEX + #define __PYX_LIMITED_VERSION_HEX Py_LIMITED_API + #endif + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #define CYTHON_COMPILING_IN_LIMITED_API 1 + #define CYTHON_COMPILING_IN_GRAAL 0 + #define CYTHON_COMPILING_IN_NOGIL 0 + #undef CYTHON_CLINE_IN_TRACEBACK + #define CYTHON_CLINE_IN_TRACEBACK 0 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_TYPE_SPECS + #define CYTHON_USE_TYPE_SPECS 1 #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #undef CYTHON_USE_ASYNC_SLOTS #define CYTHON_USE_ASYNC_SLOTS 0 #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 - #ifndef CYTHON_USE_UNICODE_INTERNALS - #define CYTHON_USE_UNICODE_INTERNALS 1 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #ifndef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 #endif - #undef CYTHON_USE_UNICODE_WRITER - #define CYTHON_USE_UNICODE_WRITER 0 #undef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 0 #ifndef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 0 #endif - #ifndef CYTHON_ASSUME_SAFE_MACROS - #define CYTHON_ASSUME_SAFE_MACROS 1 - #endif - #ifndef CYTHON_UNPACK_METHODS - #define CYTHON_UNPACK_METHODS 1 - #endif + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_GIL + #define CYTHON_FAST_GIL 0 + #undef CYTHON_METH_FASTCALL + #define CYTHON_METH_FASTCALL 0 #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 + #ifndef CYTHON_PEP487_INIT_SUBCLASS + #define CYTHON_PEP487_INIT_SUBCLASS 1 + #endif #undef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 0 - #undef CYTHON_USE_TP_FINALIZE - #define CYTHON_USE_TP_FINALIZE 0 + #undef CYTHON_USE_MODULE_STATE + #define CYTHON_USE_MODULE_STATE 1 + #ifndef CYTHON_USE_TP_FINALIZE + #define CYTHON_USE_TP_FINALIZE 0 + #endif #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #undef CYTHON_USE_EXC_INFO_STACK @@ -134,19 +257,28 @@ #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 #endif -#elif defined(PY_NOGIL) + #undef CYTHON_USE_FREELISTS + #define CYTHON_USE_FREELISTS 0 +#elif defined(Py_GIL_DISABLED) || defined(Py_NOGIL) #define CYTHON_COMPILING_IN_PYPY 0 - #define CYTHON_COMPILING_IN_PYSTON 0 #define CYTHON_COMPILING_IN_CPYTHON 0 + #define CYTHON_COMPILING_IN_LIMITED_API 0 + #define CYTHON_COMPILING_IN_GRAAL 0 #define CYTHON_COMPILING_IN_NOGIL 1 #ifndef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 1 #endif + #ifndef CYTHON_USE_TYPE_SPECS + #define CYTHON_USE_TYPE_SPECS 0 + #endif #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #ifndef CYTHON_USE_ASYNC_SLOTS #define CYTHON_USE_ASYNC_SLOTS 1 #endif + #ifndef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #endif #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 #ifndef CYTHON_USE_UNICODE_INTERNALS @@ -154,8 +286,6 @@ #endif #undef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 - #undef CYTHON_USE_PYLONG_INTERNALS - #define CYTHON_USE_PYLONG_INTERNALS 0 #ifndef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 0 #endif @@ -167,11 +297,22 @@ #endif #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_GIL + #define CYTHON_FAST_GIL 0 + #ifndef CYTHON_METH_FASTCALL + #define CYTHON_METH_FASTCALL 1 + #endif #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 + #ifndef CYTHON_PEP487_INIT_SUBCLASS + #define CYTHON_PEP487_INIT_SUBCLASS 1 + #endif #ifndef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 1 #endif + #ifndef CYTHON_USE_MODULE_STATE + #define CYTHON_USE_MODULE_STATE 0 + #endif #ifndef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE 1 #endif @@ -179,18 +320,25 @@ #define CYTHON_USE_DICT_VERSIONS 0 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 0 + #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC + #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 + #endif + #ifndef CYTHON_USE_FREELISTS + #define CYTHON_USE_FREELISTS 0 + #endif #else #define CYTHON_COMPILING_IN_PYPY 0 - #define CYTHON_COMPILING_IN_PYSTON 0 #define CYTHON_COMPILING_IN_CPYTHON 1 + #define CYTHON_COMPILING_IN_LIMITED_API 0 + #define CYTHON_COMPILING_IN_GRAAL 0 #define CYTHON_COMPILING_IN_NOGIL 0 #ifndef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 1 #endif - #if PY_VERSION_HEX < 0x02070000 - #undef CYTHON_USE_PYTYPE_LOOKUP - #define CYTHON_USE_PYTYPE_LOOKUP 0 - #elif !defined(CYTHON_USE_PYTYPE_LOOKUP) + #ifndef CYTHON_USE_TYPE_SPECS + #define CYTHON_USE_TYPE_SPECS 0 + #endif + #ifndef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 1 #endif #if PY_MAJOR_VERSION < 3 @@ -199,10 +347,7 @@ #elif !defined(CYTHON_USE_ASYNC_SLOTS) #define CYTHON_USE_ASYNC_SLOTS 1 #endif - #if PY_VERSION_HEX < 0x02070000 - #undef CYTHON_USE_PYLONG_INTERNALS - #define CYTHON_USE_PYLONG_INTERNALS 0 - #elif !defined(CYTHON_USE_PYLONG_INTERNALS) + #ifndef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 1 #endif #ifndef CYTHON_USE_PYLIST_INTERNALS @@ -226,37 +371,62 @@ #ifndef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 1 #endif - #if PY_VERSION_HEX >= 0x030B00A4 - #undef CYTHON_FAST_THREAD_STATE - #define CYTHON_FAST_THREAD_STATE 0 - #elif !defined(CYTHON_FAST_THREAD_STATE) + #ifndef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 1 #endif + #ifndef CYTHON_FAST_GIL + #define CYTHON_FAST_GIL (PY_MAJOR_VERSION < 3 || PY_VERSION_HEX >= 0x03060000 && PY_VERSION_HEX < 0x030C00A6) + #endif + #ifndef CYTHON_METH_FASTCALL + #define CYTHON_METH_FASTCALL (PY_VERSION_HEX >= 0x030700A1) + #endif #ifndef CYTHON_FAST_PYCALL - #define CYTHON_FAST_PYCALL (PY_VERSION_HEX < 0x030A0000) + #define CYTHON_FAST_PYCALL 1 #endif - #ifndef CYTHON_PEP489_MULTI_PHASE_INIT - #define CYTHON_PEP489_MULTI_PHASE_INIT (PY_VERSION_HEX >= 0x03050000) + #ifndef CYTHON_PEP487_INIT_SUBCLASS + #define CYTHON_PEP487_INIT_SUBCLASS 1 #endif - #ifndef CYTHON_USE_TP_FINALIZE - #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1) + #if PY_VERSION_HEX < 0x03050000 + #undef CYTHON_PEP489_MULTI_PHASE_INIT + #define CYTHON_PEP489_MULTI_PHASE_INIT 0 + #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) + #define CYTHON_PEP489_MULTI_PHASE_INIT 1 + #endif + #ifndef CYTHON_USE_MODULE_STATE + #define CYTHON_USE_MODULE_STATE 0 + #endif + #if PY_VERSION_HEX < 0x030400a1 + #undef CYTHON_USE_TP_FINALIZE + #define CYTHON_USE_TP_FINALIZE 0 + #elif !defined(CYTHON_USE_TP_FINALIZE) + #define CYTHON_USE_TP_FINALIZE 1 #endif - #ifndef CYTHON_USE_DICT_VERSIONS - #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX >= 0x030600B1) + #if PY_VERSION_HEX < 0x030600B1 + #undef CYTHON_USE_DICT_VERSIONS + #define CYTHON_USE_DICT_VERSIONS 0 + #elif !defined(CYTHON_USE_DICT_VERSIONS) + #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX < 0x030C00A5) #endif - #if PY_VERSION_HEX >= 0x030B00A4 + #if PY_VERSION_HEX < 0x030700A3 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 0 #elif !defined(CYTHON_USE_EXC_INFO_STACK) - #define CYTHON_USE_EXC_INFO_STACK (PY_VERSION_HEX >= 0x030700A3) + #define CYTHON_USE_EXC_INFO_STACK 1 #endif #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 #endif + #ifndef CYTHON_USE_FREELISTS + #define CYTHON_USE_FREELISTS 1 + #endif #endif #if !defined(CYTHON_FAST_PYCCALL) #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) #endif +#if !defined(CYTHON_VECTORCALL) +#define CYTHON_VECTORCALL (CYTHON_FAST_PYCCALL && PY_VERSION_HEX >= 0x030800B1) +#endif +#define CYTHON_BACKPORT_VECTORCALL (CYTHON_METH_FASTCALL && PY_VERSION_HEX < 0x030800B1) #if CYTHON_USE_PYLONG_INTERNALS #if PY_MAJOR_VERSION < 3 #include "longintrepr.h" @@ -285,6 +455,17 @@ #define CYTHON_RESTRICT #endif #endif +#ifndef CYTHON_UNUSED + #if defined(__cplusplus) + /* for clang __has_cpp_attribute(maybe_unused) is true even before C++17 + * but leads to warnings with -pedantic, since it is a C++17 feature */ + #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) + #if __has_cpp_attribute(maybe_unused) + #define CYTHON_UNUSED [[maybe_unused]] + #endif + #endif + #endif +#endif #ifndef CYTHON_UNUSED # if defined(__GNUC__) # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) @@ -298,13 +479,16 @@ # define CYTHON_UNUSED # endif #endif -#ifndef CYTHON_MAYBE_UNUSED_VAR +#ifndef CYTHON_UNUSED_VAR # if defined(__cplusplus) - template void CYTHON_MAYBE_UNUSED_VAR( const T& ) { } + template void CYTHON_UNUSED_VAR( const T& ) { } # else -# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x) +# define CYTHON_UNUSED_VAR(x) (void)(x) # endif #endif +#ifndef CYTHON_MAYBE_UNUSED_VAR + #define CYTHON_MAYBE_UNUSED_VAR(x) CYTHON_UNUSED_VAR(x) +#endif #ifndef CYTHON_NCP_UNUSED # if CYTHON_COMPILING_IN_CPYTHON # define CYTHON_NCP_UNUSED @@ -312,28 +496,59 @@ # define CYTHON_NCP_UNUSED CYTHON_UNUSED # endif #endif +#ifndef CYTHON_USE_CPP_STD_MOVE + #if defined(__cplusplus) && (\ + __cplusplus >= 201103L || (defined(_MSC_VER) && _MSC_VER >= 1600)) + #define CYTHON_USE_CPP_STD_MOVE 1 + #else + #define CYTHON_USE_CPP_STD_MOVE 0 + #endif +#endif #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) #ifdef _MSC_VER #ifndef _MSC_STDINT_H_ #if _MSC_VER < 1300 - typedef unsigned char uint8_t; - typedef unsigned int uint32_t; + typedef unsigned char uint8_t; + typedef unsigned short uint16_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int16 uint16_t; + typedef unsigned __int32 uint32_t; + #endif + #endif + #if _MSC_VER < 1300 + #ifdef _WIN64 + typedef unsigned long long __pyx_uintptr_t; + #else + typedef unsigned int __pyx_uintptr_t; + #endif + #else + #ifdef _WIN64 + typedef unsigned __int64 __pyx_uintptr_t; #else - typedef unsigned __int8 uint8_t; - typedef unsigned __int32 uint32_t; + typedef unsigned __int32 __pyx_uintptr_t; #endif #endif #else - #include + #include + typedef uintptr_t __pyx_uintptr_t; #endif #ifndef CYTHON_FALLTHROUGH - #if defined(__cplusplus) && __cplusplus >= 201103L - #if __has_cpp_attribute(fallthrough) - #define CYTHON_FALLTHROUGH [[fallthrough]] - #elif __has_cpp_attribute(clang::fallthrough) - #define CYTHON_FALLTHROUGH [[clang::fallthrough]] - #elif __has_cpp_attribute(gnu::fallthrough) - #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] + #if defined(__cplusplus) + /* for clang __has_cpp_attribute(fallthrough) is true even before C++17 + * but leads to warnings with -pedantic, since it is a C++17 feature */ + #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #elif __has_cpp_attribute(gnu::fallthrough) + #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] + #endif #endif #endif #ifndef CYTHON_FALLTHROUGH @@ -343,13 +558,26 @@ #define CYTHON_FALLTHROUGH #endif #endif - #if defined(__clang__ ) && defined(__apple_build_version__) + #if defined(__clang__) && defined(__apple_build_version__) #if __apple_build_version__ < 7000000 #undef CYTHON_FALLTHROUGH #define CYTHON_FALLTHROUGH #endif #endif #endif +#ifdef __cplusplus + template + struct __PYX_IS_UNSIGNED_IMPL {static const bool value = T(0) < T(-1);}; + #define __PYX_IS_UNSIGNED(type) (__PYX_IS_UNSIGNED_IMPL::value) +#else + #define __PYX_IS_UNSIGNED(type) (((type)-1) > 0) +#endif +#if CYTHON_COMPILING_IN_PYPY == 1 + #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x030A0000) +#else + #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000) +#endif +#define __PYX_REINTERPRET_FUNCION(func_pointer, other_pointer) ((func_pointer)(void(*)(void))(other_pointer)) #ifndef CYTHON_INLINE #if defined(__clang__) @@ -365,85 +593,145 @@ #endif #endif -#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) - #define Py_OptimizeFlag 0 -#endif #define __PYX_BUILD_PY_SSIZE_T "n" #define CYTHON_FORMAT_SSIZE_T "z" #if PY_MAJOR_VERSION < 3 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ - PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyClass_Type + #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #else #define __Pyx_BUILTIN_MODULE_NAME "builtins" #define __Pyx_DefaultClassType PyType_Type -#if PY_VERSION_HEX >= 0x030B00A1 - static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int k, int l, int s, int f, +#if CYTHON_COMPILING_IN_LIMITED_API + static CYTHON_INLINE PyObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, PyObject *code, PyObject *c, PyObject* n, PyObject *v, PyObject *fv, PyObject *cell, PyObject* fn, PyObject *name, int fline, PyObject *lnos) { - PyObject *kwds=NULL, *argcount=NULL, *posonlyargcount=NULL, *kwonlyargcount=NULL; - PyObject *nlocals=NULL, *stacksize=NULL, *flags=NULL, *replace=NULL, *call_result=NULL, *empty=NULL; - const char *fn_cstr=NULL; - const char *name_cstr=NULL; - PyCodeObject* co=NULL; + PyObject *exception_table = NULL; + PyObject *types_module=NULL, *code_type=NULL, *result=NULL; + #if __PYX_LIMITED_VERSION_HEX < 0x030B0000 + PyObject *version_info; + PyObject *py_minor_version = NULL; + #endif + long minor_version = 0; PyObject *type, *value, *traceback; PyErr_Fetch(&type, &value, &traceback); - if (!(kwds=PyDict_New())) goto end; - if (!(argcount=PyLong_FromLong(a))) goto end; - if (PyDict_SetItemString(kwds, "co_argcount", argcount) != 0) goto end; - if (!(posonlyargcount=PyLong_FromLong(0))) goto end; - if (PyDict_SetItemString(kwds, "co_posonlyargcount", posonlyargcount) != 0) goto end; - if (!(kwonlyargcount=PyLong_FromLong(k))) goto end; - if (PyDict_SetItemString(kwds, "co_kwonlyargcount", kwonlyargcount) != 0) goto end; - if (!(nlocals=PyLong_FromLong(l))) goto end; - if (PyDict_SetItemString(kwds, "co_nlocals", nlocals) != 0) goto end; - if (!(stacksize=PyLong_FromLong(s))) goto end; - if (PyDict_SetItemString(kwds, "co_stacksize", stacksize) != 0) goto end; - if (!(flags=PyLong_FromLong(f))) goto end; - if (PyDict_SetItemString(kwds, "co_flags", flags) != 0) goto end; - if (PyDict_SetItemString(kwds, "co_code", code) != 0) goto end; - if (PyDict_SetItemString(kwds, "co_consts", c) != 0) goto end; - if (PyDict_SetItemString(kwds, "co_names", n) != 0) goto end; - if (PyDict_SetItemString(kwds, "co_varnames", v) != 0) goto end; - if (PyDict_SetItemString(kwds, "co_freevars", fv) != 0) goto end; - if (PyDict_SetItemString(kwds, "co_cellvars", cell) != 0) goto end; - if (PyDict_SetItemString(kwds, "co_linetable", lnos) != 0) goto end; - if (!(fn_cstr=PyUnicode_AsUTF8AndSize(fn, NULL))) goto end; - if (!(name_cstr=PyUnicode_AsUTF8AndSize(name, NULL))) goto end; - if (!(co = PyCode_NewEmpty(fn_cstr, name_cstr, fline))) goto end; - if (!(replace = PyObject_GetAttrString((PyObject*)co, "replace"))) goto cleanup_code_too; - if (!(empty = PyTuple_New(0))) goto cleanup_code_too; // unfortunately __pyx_empty_tuple isn't available here - if (!(call_result = PyObject_Call(replace, empty, kwds))) goto cleanup_code_too; - Py_XDECREF((PyObject*)co); - co = (PyCodeObject*)call_result; - call_result = NULL; - if (0) { - cleanup_code_too: - Py_XDECREF((PyObject*)co); - co = NULL; - } - end: - Py_XDECREF(kwds); - Py_XDECREF(argcount); - Py_XDECREF(posonlyargcount); - Py_XDECREF(kwonlyargcount); - Py_XDECREF(nlocals); - Py_XDECREF(stacksize); - Py_XDECREF(replace); - Py_XDECREF(call_result); - Py_XDECREF(empty); + #if __PYX_LIMITED_VERSION_HEX >= 0x030B0000 + minor_version = 11; + #else + if (!(version_info = PySys_GetObject("version_info"))) goto end; + if (!(py_minor_version = PySequence_GetItem(version_info, 1))) goto end; + minor_version = PyLong_AsLong(py_minor_version); + Py_DECREF(py_minor_version); + if (minor_version == -1 && PyErr_Occurred()) goto end; + #endif + if (!(types_module = PyImport_ImportModule("types"))) goto end; + if (!(code_type = PyObject_GetAttrString(types_module, "CodeType"))) goto end; + if (minor_version <= 7) { + (void)p; + result = PyObject_CallFunction(code_type, "iiiiiOOOOOOiOO", a, k, l, s, f, code, + c, n, v, fn, name, fline, lnos, fv, cell); + } else if (minor_version <= 10) { + result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOiOO", a,p, k, l, s, f, code, + c, n, v, fn, name, fline, lnos, fv, cell); + } else { + if (!(exception_table = PyBytes_FromStringAndSize(NULL, 0))) goto end; + result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOOiOO", a,p, k, l, s, f, code, + c, n, v, fn, name, name, fline, lnos, exception_table, fv, cell); + } + end: + Py_XDECREF(code_type); + Py_XDECREF(exception_table); + Py_XDECREF(types_module); if (type) { PyErr_Restore(type, value, traceback); } - return co; + return result; } + #ifndef CO_OPTIMIZED + #define CO_OPTIMIZED 0x0001 + #endif + #ifndef CO_NEWLOCALS + #define CO_NEWLOCALS 0x0002 + #endif + #ifndef CO_VARARGS + #define CO_VARARGS 0x0004 + #endif + #ifndef CO_VARKEYWORDS + #define CO_VARKEYWORDS 0x0008 + #endif + #ifndef CO_ASYNC_GENERATOR + #define CO_ASYNC_GENERATOR 0x0200 + #endif + #ifndef CO_GENERATOR + #define CO_GENERATOR 0x0020 + #endif + #ifndef CO_COROUTINE + #define CO_COROUTINE 0x0080 + #endif +#elif PY_VERSION_HEX >= 0x030B0000 + static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, + PyObject *code, PyObject *c, PyObject* n, PyObject *v, + PyObject *fv, PyObject *cell, PyObject* fn, + PyObject *name, int fline, PyObject *lnos) { + PyCodeObject *result; + PyObject *empty_bytes = PyBytes_FromStringAndSize("", 0); + if (!empty_bytes) return NULL; + result = + #if PY_VERSION_HEX >= 0x030C0000 + PyUnstable_Code_NewWithPosOnlyArgs + #else + PyCode_NewWithPosOnlyArgs + #endif + (a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, name, fline, lnos, empty_bytes); + Py_DECREF(empty_bytes); + return result; + } +#elif PY_VERSION_HEX >= 0x030800B2 && !CYTHON_COMPILING_IN_PYPY + #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + PyCode_NewWithPosOnlyArgs(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #else - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ + #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #endif - #define __Pyx_DefaultClassType PyType_Type +#endif +#if PY_VERSION_HEX >= 0x030900A4 || defined(Py_IS_TYPE) + #define __Pyx_IS_TYPE(ob, type) Py_IS_TYPE(ob, type) +#else + #define __Pyx_IS_TYPE(ob, type) (((const PyObject*)ob)->ob_type == (type)) +#endif +#if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_Is) + #define __Pyx_Py_Is(x, y) Py_Is(x, y) +#else + #define __Pyx_Py_Is(x, y) ((x) == (y)) +#endif +#if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsNone) + #define __Pyx_Py_IsNone(ob) Py_IsNone(ob) +#else + #define __Pyx_Py_IsNone(ob) __Pyx_Py_Is((ob), Py_None) +#endif +#if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsTrue) + #define __Pyx_Py_IsTrue(ob) Py_IsTrue(ob) +#else + #define __Pyx_Py_IsTrue(ob) __Pyx_Py_Is((ob), Py_True) +#endif +#if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsFalse) + #define __Pyx_Py_IsFalse(ob) Py_IsFalse(ob) +#else + #define __Pyx_Py_IsFalse(ob) __Pyx_Py_Is((ob), Py_False) +#endif +#define __Pyx_NoneAsNull(obj) (__Pyx_Py_IsNone(obj) ? NULL : (obj)) +#if PY_VERSION_HEX >= 0x030900F0 && !CYTHON_COMPILING_IN_PYPY + #define __Pyx_PyObject_GC_IsFinalized(o) PyObject_GC_IsFinalized(o) +#else + #define __Pyx_PyObject_GC_IsFinalized(o) _PyGC_FINALIZED(o) +#endif +#ifndef CO_COROUTINE + #define CO_COROUTINE 0x80 +#endif +#ifndef CO_ASYNC_GENERATOR + #define CO_ASYNC_GENERATOR 0x200 #endif #ifndef Py_TPFLAGS_CHECKTYPES #define Py_TPFLAGS_CHECKTYPES 0 @@ -457,6 +745,12 @@ #ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif +#ifndef Py_TPFLAGS_SEQUENCE + #define Py_TPFLAGS_SEQUENCE 0 +#endif +#ifndef Py_TPFLAGS_MAPPING + #define Py_TPFLAGS_MAPPING 0 +#endif #ifndef METH_STACKLESS #define METH_STACKLESS 0 #endif @@ -468,34 +762,89 @@ typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args, Py_ssize_t nargs, PyObject *kwnames); #else - #define __Pyx_PyCFunctionFast _PyCFunctionFast - #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords + #if PY_VERSION_HEX >= 0x030d00A4 + # define __Pyx_PyCFunctionFast PyCFunctionFast + # define __Pyx_PyCFunctionFastWithKeywords PyCFunctionFastWithKeywords + #else + # define __Pyx_PyCFunctionFast _PyCFunctionFast + # define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords + #endif +#endif +#if CYTHON_METH_FASTCALL + #define __Pyx_METH_FASTCALL METH_FASTCALL + #define __Pyx_PyCFunction_FastCall __Pyx_PyCFunctionFast + #define __Pyx_PyCFunction_FastCallWithKeywords __Pyx_PyCFunctionFastWithKeywords +#else + #define __Pyx_METH_FASTCALL METH_VARARGS + #define __Pyx_PyCFunction_FastCall PyCFunction + #define __Pyx_PyCFunction_FastCallWithKeywords PyCFunctionWithKeywords +#endif +#if CYTHON_VECTORCALL + #define __pyx_vectorcallfunc vectorcallfunc + #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET PY_VECTORCALL_ARGUMENTS_OFFSET + #define __Pyx_PyVectorcall_NARGS(n) PyVectorcall_NARGS((size_t)(n)) +#elif CYTHON_BACKPORT_VECTORCALL + typedef PyObject *(*__pyx_vectorcallfunc)(PyObject *callable, PyObject *const *args, + size_t nargsf, PyObject *kwnames); + #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET ((size_t)1 << (8 * sizeof(size_t) - 1)) + #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(((size_t)(n)) & ~__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET)) +#else + #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET 0 + #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(n)) +#endif +#if PY_MAJOR_VERSION >= 0x030900B1 +#define __Pyx_PyCFunction_CheckExact(func) PyCFunction_CheckExact(func) +#else +#define __Pyx_PyCFunction_CheckExact(func) PyCFunction_Check(func) #endif -#if CYTHON_FAST_PYCCALL -#define __Pyx_PyFastCFunction_Check(func)\ - ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS))))) +#define __Pyx_CyOrPyCFunction_Check(func) PyCFunction_Check(func) +#if CYTHON_COMPILING_IN_CPYTHON +#define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) (((PyCFunctionObject*)(func))->m_ml->ml_meth) +#elif !CYTHON_COMPILING_IN_LIMITED_API +#define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) PyCFunction_GET_FUNCTION(func) +#endif +#if CYTHON_COMPILING_IN_CPYTHON +#define __Pyx_CyOrPyCFunction_GET_FLAGS(func) (((PyCFunctionObject*)(func))->m_ml->ml_flags) +static CYTHON_INLINE PyObject* __Pyx_CyOrPyCFunction_GET_SELF(PyObject *func) { + return (__Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_STATIC) ? NULL : ((PyCFunctionObject*)func)->m_self; +} +#endif +static CYTHON_INLINE int __Pyx__IsSameCFunction(PyObject *func, void *cfunc) { +#if CYTHON_COMPILING_IN_LIMITED_API + return PyCFunction_Check(func) && PyCFunction_GetFunction(func) == (PyCFunction) cfunc; +#else + return PyCFunction_Check(func) && PyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; +#endif +} +#define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCFunction(func, cfunc) +#if __PYX_LIMITED_VERSION_HEX < 0x030900B1 + #define __Pyx_PyType_FromModuleAndSpec(m, s, b) ((void)m, PyType_FromSpecWithBases(s, b)) + typedef PyObject *(*__Pyx_PyCMethod)(PyObject *, PyTypeObject *, PyObject *const *, size_t, PyObject *); #else -#define __Pyx_PyFastCFunction_Check(func) 0 + #define __Pyx_PyType_FromModuleAndSpec(m, s, b) PyType_FromModuleAndSpec(m, s, b) + #define __Pyx_PyCMethod PyCMethod +#endif +#ifndef METH_METHOD + #define METH_METHOD 0x200 #endif #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) #define PyObject_Malloc(s) PyMem_Malloc(s) #define PyObject_Free(p) PyMem_Free(p) #define PyObject_Realloc(p) PyMem_Realloc(p) #endif -#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030400A1 - #define PyMem_RawMalloc(n) PyMem_Malloc(n) - #define PyMem_RawRealloc(p, n) PyMem_Realloc(p, n) - #define PyMem_RawFree(p) PyMem_Free(p) -#endif -#if CYTHON_COMPILING_IN_PYSTON - #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co) - #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno) +#if CYTHON_COMPILING_IN_LIMITED_API + #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) #else #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) #endif -#if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000 +#if CYTHON_COMPILING_IN_LIMITED_API + #define __Pyx_PyThreadState_Current PyThreadState_Get() +#elif !CYTHON_FAST_THREAD_STATE #define __Pyx_PyThreadState_Current PyThreadState_GET() +#elif PY_VERSION_HEX >= 0x030d00A1 + #define __Pyx_PyThreadState_Current PyThreadState_GetUnchecked() #elif PY_VERSION_HEX >= 0x03060000 #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet() #elif PY_VERSION_HEX >= 0x03000000 @@ -503,6 +852,22 @@ #else #define __Pyx_PyThreadState_Current _PyThreadState_Current #endif +#if CYTHON_COMPILING_IN_LIMITED_API +static CYTHON_INLINE void *__Pyx_PyModule_GetState(PyObject *op) +{ + void *result; + result = PyModule_GetState(op); + if (!result) + Py_FatalError("Couldn't find the module state"); + return result; +} +#endif +#define __Pyx_PyObject_GetSlot(obj, name, func_ctype) __Pyx_PyType_GetSlot(Py_TYPE(obj), name, func_ctype) +#if CYTHON_COMPILING_IN_LIMITED_API + #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((func_ctype) PyType_GetSlot((type), Py_##name)) +#else + #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((type)->name) +#endif #if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT) #include "pythread.h" #define Py_tss_NEEDS_INIT 0 @@ -533,7 +898,29 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { return PyThread_get_key_value(*key); } #endif -#if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized) +#if PY_MAJOR_VERSION < 3 + #if CYTHON_COMPILING_IN_PYPY + #if PYPY_VERSION_NUM < 0x07030600 + #if defined(__cplusplus) && __cplusplus >= 201402L + [[deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")]] + #elif defined(__GNUC__) || defined(__clang__) + __attribute__ ((__deprecated__("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6"))) + #elif defined(_MSC_VER) + __declspec(deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")) + #endif + static CYTHON_INLINE int PyGILState_Check(void) { + return 0; + } + #else // PYPY_VERSION_NUM < 0x07030600 + #endif // PYPY_VERSION_NUM < 0x07030600 + #else + static CYTHON_INLINE int PyGILState_Check(void) { + PyThreadState * tstate = _PyThreadState_Current; + return tstate && (tstate == PyGILState_GetThisThreadState()); + } + #endif +#endif +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 || defined(_PyDict_NewPresized) #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n)) #else #define __Pyx_PyDict_NewPresized(n) PyDict_New() @@ -545,12 +932,69 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) #endif -#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS -#define __Pyx_PyDict_GetItemStr(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash) +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030600B4 && PY_VERSION_HEX < 0x030d0000 && CYTHON_USE_UNICODE_INTERNALS +#define __Pyx_PyDict_GetItemStrWithError(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash) +static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStr(PyObject *dict, PyObject *name) { + PyObject *res = __Pyx_PyDict_GetItemStrWithError(dict, name); + if (res == NULL) PyErr_Clear(); + return res; +} +#elif PY_MAJOR_VERSION >= 3 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07020000) +#define __Pyx_PyDict_GetItemStrWithError PyDict_GetItemWithError +#define __Pyx_PyDict_GetItemStr PyDict_GetItem +#else +static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStrWithError(PyObject *dict, PyObject *name) { +#if CYTHON_COMPILING_IN_PYPY + return PyDict_GetItem(dict, name); +#else + PyDictEntry *ep; + PyDictObject *mp = (PyDictObject*) dict; + long hash = ((PyStringObject *) name)->ob_shash; + assert(hash != -1); + ep = (mp->ma_lookup)(mp, name, hash); + if (ep == NULL) { + return NULL; + } + return ep->me_value; +#endif +} +#define __Pyx_PyDict_GetItemStr PyDict_GetItem +#endif +#if CYTHON_USE_TYPE_SLOTS + #define __Pyx_PyType_GetFlags(tp) (((PyTypeObject *)tp)->tp_flags) + #define __Pyx_PyType_HasFeature(type, feature) ((__Pyx_PyType_GetFlags(type) & (feature)) != 0) + #define __Pyx_PyObject_GetIterNextFunc(obj) (Py_TYPE(obj)->tp_iternext) +#else + #define __Pyx_PyType_GetFlags(tp) (PyType_GetFlags((PyTypeObject *)tp)) + #define __Pyx_PyType_HasFeature(type, feature) PyType_HasFeature(type, feature) + #define __Pyx_PyObject_GetIterNextFunc(obj) PyIter_Next +#endif +#if CYTHON_COMPILING_IN_LIMITED_API + #define __Pyx_SetItemOnTypeDict(tp, k, v) PyObject_GenericSetAttr((PyObject*)tp, k, v) +#else + #define __Pyx_SetItemOnTypeDict(tp, k, v) PyDict_SetItem(tp->tp_dict, k, v) +#endif +#if CYTHON_USE_TYPE_SPECS && PY_VERSION_HEX >= 0x03080000 +#define __Pyx_PyHeapTypeObject_GC_Del(obj) {\ + PyTypeObject *type = Py_TYPE((PyObject*)obj);\ + assert(__Pyx_PyType_HasFeature(type, Py_TPFLAGS_HEAPTYPE));\ + PyObject_GC_Del(obj);\ + Py_DECREF(type);\ +} #else -#define __Pyx_PyDict_GetItemStr(dict, name) PyDict_GetItem(dict, name) +#define __Pyx_PyHeapTypeObject_GC_Del(obj) PyObject_GC_Del(obj) #endif -#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) +#if CYTHON_COMPILING_IN_LIMITED_API + #define CYTHON_PEP393_ENABLED 1 + #define __Pyx_PyUnicode_READY(op) (0) + #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GetLength(u) + #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_ReadChar(u, i) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((void)u, 1114111U) + #define __Pyx_PyUnicode_KIND(u) ((void)u, (0)) + #define __Pyx_PyUnicode_DATA(u) ((void*)u) + #define __Pyx_PyUnicode_READ(k, d, i) ((void)k, PyUnicode_ReadChar((PyObject*)(d), i)) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GetLength(u)) +#elif PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) #define CYTHON_PEP393_ENABLED 1 #if PY_VERSION_HEX >= 0x030C0000 #define __Pyx_PyUnicode_READY(op) (0) @@ -561,10 +1005,10 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) - #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) + #define __Pyx_PyUnicode_KIND(u) ((int)PyUnicode_KIND(u)) #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) - #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, (Py_UCS4) ch) #if PY_VERSION_HEX >= 0x030C0000 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_LENGTH(u)) #else @@ -582,11 +1026,11 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) - #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111) - #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535U : 1114111U) + #define __Pyx_PyUnicode_KIND(u) ((int)sizeof(Py_UNICODE)) #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) - #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = (Py_UNICODE) ch) #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) #endif #if CYTHON_COMPILING_IN_PYPY @@ -597,14 +1041,20 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) #endif -#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains) - #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) -#endif -#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check) - #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) -#endif -#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format) - #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) +#if CYTHON_COMPILING_IN_PYPY + #if !defined(PyUnicode_DecodeUnicodeEscape) + #define PyUnicode_DecodeUnicodeEscape(s, size, errors) PyUnicode_Decode(s, size, "unicode_escape", errors) + #endif + #if !defined(PyUnicode_Contains) || (PY_MAJOR_VERSION == 2 && PYPY_VERSION_NUM < 0x07030500) + #undef PyUnicode_Contains + #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) + #endif + #if !defined(PyByteArray_Check) + #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) + #endif + #if !defined(PyObject_Format) + #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) + #endif #endif #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) @@ -633,8 +1083,14 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) #endif +#if CYTHON_COMPILING_IN_CPYTHON + #define __Pyx_PySequence_ListKeepNew(obj)\ + (likely(PyList_CheckExact(obj) && Py_REFCNT(obj) == 1) ? __Pyx_NewRef(obj) : PySequence_List(obj)) +#else + #define __Pyx_PySequence_ListKeepNew(obj) PySequence_List(obj) +#endif #ifndef PySet_CheckExact - #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) + #define PySet_CheckExact(obj) __Pyx_IS_TYPE(obj, &PySet_Type) #endif #if PY_VERSION_HEX >= 0x030900A4 #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt) @@ -644,15 +1100,42 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size) #endif #if CYTHON_ASSUME_SAFE_MACROS + #define __Pyx_PySequence_ITEM(o, i) PySequence_ITEM(o, i) #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq) + #define __Pyx_PyTuple_SET_ITEM(o, i, v) (PyTuple_SET_ITEM(o, i, v), (0)) + #define __Pyx_PyList_SET_ITEM(o, i, v) (PyList_SET_ITEM(o, i, v), (0)) + #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_GET_SIZE(o) + #define __Pyx_PyList_GET_SIZE(o) PyList_GET_SIZE(o) + #define __Pyx_PySet_GET_SIZE(o) PySet_GET_SIZE(o) + #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_GET_SIZE(o) + #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_GET_SIZE(o) #else + #define __Pyx_PySequence_ITEM(o, i) PySequence_GetItem(o, i) #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq) + #define __Pyx_PyTuple_SET_ITEM(o, i, v) PyTuple_SetItem(o, i, v) + #define __Pyx_PyList_SET_ITEM(o, i, v) PyList_SetItem(o, i, v) + #define __Pyx_PyTuple_GET_SIZE(o) PyTuple_Size(o) + #define __Pyx_PyList_GET_SIZE(o) PyList_Size(o) + #define __Pyx_PySet_GET_SIZE(o) PySet_Size(o) + #define __Pyx_PyBytes_GET_SIZE(o) PyBytes_Size(o) + #define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_Size(o) +#endif +#if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1 + #define __Pyx_PyImport_AddModuleRef(name) PyImport_AddModuleRef(name) +#else + static CYTHON_INLINE PyObject *__Pyx_PyImport_AddModuleRef(const char *name) { + PyObject *module = PyImport_AddModule(name); + Py_XINCREF(module); + return module; + } #endif #if PY_MAJOR_VERSION >= 3 #define PyIntObject PyLongObject #define PyInt_Type PyLong_Type #define PyInt_Check(op) PyLong_Check(op) #define PyInt_CheckExact(op) PyLong_CheckExact(op) + #define __Pyx_Py3Int_Check(op) PyLong_Check(op) + #define __Pyx_Py3Int_CheckExact(op) PyLong_CheckExact(op) #define PyInt_FromString PyLong_FromString #define PyInt_FromUnicode PyLong_FromUnicode #define PyInt_FromLong PyLong_FromLong @@ -664,6 +1147,9 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask #define PyNumber_Int PyNumber_Long +#else + #define __Pyx_Py3Int_Check(op) (PyLong_Check(op) || PyInt_Check(op)) + #define __Pyx_Py3Int_CheckExact(op) (PyLong_CheckExact(op) || PyInt_CheckExact(op)) #endif #if PY_MAJOR_VERSION >= 3 #define PyBoolObject PyLongObject @@ -681,11 +1167,6 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsSsize_t #endif -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyMethod_New(func, self, klass) ((self) ? ((void)(klass), PyMethod_New(func, self)) : __Pyx_NewRef(func)) -#else - #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) -#endif #if CYTHON_USE_ASYNC_SLOTS #if PY_VERSION_HEX >= 0x030500B1 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods @@ -726,11 +1207,20 @@ static CYTHON_INLINE float __PYX_NAN() { #endif #define __PYX_MARK_ERR_POS(f_index, lineno) \ - { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; } + { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; } #define __PYX_ERR(f_index, lineno, Ln_error) \ { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; } -#ifndef __PYX_EXTERN_C +#ifdef CYTHON_EXTERN_C + #undef __PYX_EXTERN_C + #define __PYX_EXTERN_C CYTHON_EXTERN_C +#elif defined(__PYX_EXTERN_C) + #ifdef _MSC_VER + #pragma message ("Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead.") + #else + #warning Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead. + #endif +#else #ifdef __cplusplus #define __PYX_EXTERN_C extern "C" #else @@ -789,9 +1279,10 @@ static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) { #else #define __Pyx_sst_abs(value) ((value<0) ? -value : value) #endif +static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s); static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); -#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) +static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char*); #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize @@ -809,9 +1300,9 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s)) #define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s)) #define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s)) -#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableString(s) ((char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) @@ -819,13 +1310,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) -static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) { - const Py_UNICODE *u_end = u; - while (*u_end++) ; - return (size_t)(u_end - u - 1); -} -#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) -#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode +#define __Pyx_PyUnicode_FromOrdinal(o) PyUnicode_FromOrdinal((int)o) #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) @@ -849,8 +1334,54 @@ static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*); #else #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) #endif -#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x)) +#if CYTHON_USE_PYLONG_INTERNALS + #if PY_VERSION_HEX >= 0x030C00A7 + #ifndef _PyLong_SIGN_MASK + #define _PyLong_SIGN_MASK 3 + #endif + #ifndef _PyLong_NON_SIZE_BITS + #define _PyLong_NON_SIZE_BITS 3 + #endif + #define __Pyx_PyLong_Sign(x) (((PyLongObject*)x)->long_value.lv_tag & _PyLong_SIGN_MASK) + #define __Pyx_PyLong_IsNeg(x) ((__Pyx_PyLong_Sign(x) & 2) != 0) + #define __Pyx_PyLong_IsNonNeg(x) (!__Pyx_PyLong_IsNeg(x)) + #define __Pyx_PyLong_IsZero(x) (__Pyx_PyLong_Sign(x) & 1) + #define __Pyx_PyLong_IsPos(x) (__Pyx_PyLong_Sign(x) == 0) + #define __Pyx_PyLong_CompactValueUnsigned(x) (__Pyx_PyLong_Digits(x)[0]) + #define __Pyx_PyLong_DigitCount(x) ((Py_ssize_t) (((PyLongObject*)x)->long_value.lv_tag >> _PyLong_NON_SIZE_BITS)) + #define __Pyx_PyLong_SignedDigitCount(x)\ + ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * __Pyx_PyLong_DigitCount(x)) + #if defined(PyUnstable_Long_IsCompact) && defined(PyUnstable_Long_CompactValue) + #define __Pyx_PyLong_IsCompact(x) PyUnstable_Long_IsCompact((PyLongObject*) x) + #define __Pyx_PyLong_CompactValue(x) PyUnstable_Long_CompactValue((PyLongObject*) x) + #else + #define __Pyx_PyLong_IsCompact(x) (((PyLongObject*)x)->long_value.lv_tag < (2 << _PyLong_NON_SIZE_BITS)) + #define __Pyx_PyLong_CompactValue(x) ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * (Py_ssize_t) __Pyx_PyLong_Digits(x)[0]) + #endif + typedef Py_ssize_t __Pyx_compact_pylong; + typedef size_t __Pyx_compact_upylong; + #else + #define __Pyx_PyLong_IsNeg(x) (Py_SIZE(x) < 0) + #define __Pyx_PyLong_IsNonNeg(x) (Py_SIZE(x) >= 0) + #define __Pyx_PyLong_IsZero(x) (Py_SIZE(x) == 0) + #define __Pyx_PyLong_IsPos(x) (Py_SIZE(x) > 0) + #define __Pyx_PyLong_CompactValueUnsigned(x) ((Py_SIZE(x) == 0) ? 0 : __Pyx_PyLong_Digits(x)[0]) + #define __Pyx_PyLong_DigitCount(x) __Pyx_sst_abs(Py_SIZE(x)) + #define __Pyx_PyLong_SignedDigitCount(x) Py_SIZE(x) + #define __Pyx_PyLong_IsCompact(x) (Py_SIZE(x) == 0 || Py_SIZE(x) == 1 || Py_SIZE(x) == -1) + #define __Pyx_PyLong_CompactValue(x)\ + ((Py_SIZE(x) == 0) ? (sdigit) 0 : ((Py_SIZE(x) < 0) ? -(sdigit)__Pyx_PyLong_Digits(x)[0] : (sdigit)__Pyx_PyLong_Digits(x)[0])) + typedef sdigit __Pyx_compact_pylong; + typedef digit __Pyx_compact_upylong; + #endif + #if PY_VERSION_HEX >= 0x030C00A5 + #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->long_value.ob_digit) + #else + #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->ob_digit) + #endif +#endif #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII +#include static int __Pyx_sys_getdefaultencoding_not_ascii; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys; @@ -871,7 +1402,7 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { char ascii_chars[128]; int c; for (c = 0; c < 128; c++) { - ascii_chars[c] = c; + ascii_chars[c] = (char) c; } __Pyx_sys_getdefaultencoding_not_ascii = 1; ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); @@ -901,6 +1432,7 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { #else #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT +#include static char* __PYX_DEFAULT_STRING_ENCODING; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys; @@ -936,24 +1468,31 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { #endif /* __GNUC__ */ static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } +#if !CYTHON_USE_MODULE_STATE static PyObject *__pyx_m = NULL; -static PyObject *__pyx_d; -static PyObject *__pyx_b; -static PyObject *__pyx_cython_runtime = NULL; -static PyObject *__pyx_empty_tuple; -static PyObject *__pyx_empty_bytes; -static PyObject *__pyx_empty_unicode; +#endif static int __pyx_lineno; static int __pyx_clineno = 0; -static const char * __pyx_cfilenm= __FILE__; +static const char * __pyx_cfilenm = __FILE__; static const char *__pyx_filename; +/* #### Code section: filename_table ### */ static const char *__pyx_f[] = { "nv_bam_parser.pyx", }; +/* #### Code section: utility_code_proto_before_types ### */ +/* ForceInitThreads.proto */ +#ifndef __PYX_FORCE_INIT_THREADS + #define __PYX_FORCE_INIT_THREADS 0 +#endif + +/* #### Code section: numeric_typedefs ### */ +/* #### Code section: complex_type_declarations ### */ +/* #### Code section: type_declarations ### */ /*--- Type declarations ---*/ +/* #### Code section: utility_code_proto ### */ /* --- Runtime support code (head) --- */ /* Refnanny.proto */ @@ -962,11 +1501,11 @@ static const char *__pyx_f[] = { #endif #if CYTHON_REFNANNY typedef struct { - void (*INCREF)(void*, PyObject*, int); - void (*DECREF)(void*, PyObject*, int); - void (*GOTREF)(void*, PyObject*, int); - void (*GIVEREF)(void*, PyObject*, int); - void* (*SetupContext)(const char*, int, const char*); + void (*INCREF)(void*, PyObject*, Py_ssize_t); + void (*DECREF)(void*, PyObject*, Py_ssize_t); + void (*GOTREF)(void*, PyObject*, Py_ssize_t); + void (*GIVEREF)(void*, PyObject*, Py_ssize_t); + void* (*SetupContext)(const char*, Py_ssize_t, const char*); void (*FinishContext)(void**); } __Pyx_RefNannyAPIStruct; static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL; @@ -976,28 +1515,40 @@ static const char *__pyx_f[] = { #define __Pyx_RefNannySetupContext(name, acquire_gil)\ if (acquire_gil) {\ PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\ + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__));\ PyGILState_Release(__pyx_gilstate_save);\ } else {\ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\ + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__));\ + } + #define __Pyx_RefNannyFinishContextNogil() {\ + PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ + __Pyx_RefNannyFinishContext();\ + PyGILState_Release(__pyx_gilstate_save);\ } #else #define __Pyx_RefNannySetupContext(name, acquire_gil)\ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__) + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), (__LINE__), (__FILE__)) + #define __Pyx_RefNannyFinishContextNogil() __Pyx_RefNannyFinishContext() #endif + #define __Pyx_RefNannyFinishContextNogil() {\ + PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ + __Pyx_RefNannyFinishContext();\ + PyGILState_Release(__pyx_gilstate_save);\ + } #define __Pyx_RefNannyFinishContext()\ __Pyx_RefNanny->FinishContext(&__pyx_refnanny) - #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__) - #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__) - #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__) - #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__) - #define __Pyx_XINCREF(r) do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0) - #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0) - #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0) - #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0) + #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) + #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) + #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) + #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), (__LINE__)) + #define __Pyx_XINCREF(r) do { if((r) == NULL); else {__Pyx_INCREF(r); }} while(0) + #define __Pyx_XDECREF(r) do { if((r) == NULL); else {__Pyx_DECREF(r); }} while(0) + #define __Pyx_XGOTREF(r) do { if((r) == NULL); else {__Pyx_GOTREF(r); }} while(0) + #define __Pyx_XGIVEREF(r) do { if((r) == NULL); else {__Pyx_GIVEREF(r);}} while(0) #else #define __Pyx_RefNannyDeclarations #define __Pyx_RefNannySetupContext(name, acquire_gil) + #define __Pyx_RefNannyFinishContextNogil() #define __Pyx_RefNannyFinishContext() #define __Pyx_INCREF(r) Py_INCREF(r) #define __Pyx_DECREF(r) Py_DECREF(r) @@ -1008,6 +1559,10 @@ static const char *__pyx_f[] = { #define __Pyx_XGOTREF(r) #define __Pyx_XGIVEREF(r) #endif +#define __Pyx_Py_XDECREF_SET(r, v) do {\ + PyObject *tmp = (PyObject *) r;\ + r = v; Py_XDECREF(tmp);\ + } while (0) #define __Pyx_XDECREF_SET(r, v) do {\ PyObject *tmp = (PyObject *) r;\ r = v; __Pyx_XDECREF(tmp);\ @@ -1019,6 +1574,57 @@ static const char *__pyx_f[] = { #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) +/* PyErrExceptionMatches.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); +#else +#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) +#endif + +/* PyThreadStateGet.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; +#define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current; +#if PY_VERSION_HEX >= 0x030C00A6 +#define __Pyx_PyErr_Occurred() (__pyx_tstate->current_exception != NULL) +#define __Pyx_PyErr_CurrentExceptionType() (__pyx_tstate->current_exception ? (PyObject*) Py_TYPE(__pyx_tstate->current_exception) : (PyObject*) NULL) +#else +#define __Pyx_PyErr_Occurred() (__pyx_tstate->curexc_type != NULL) +#define __Pyx_PyErr_CurrentExceptionType() (__pyx_tstate->curexc_type) +#endif +#else +#define __Pyx_PyThreadState_declare +#define __Pyx_PyThreadState_assign +#define __Pyx_PyErr_Occurred() (PyErr_Occurred() != NULL) +#define __Pyx_PyErr_CurrentExceptionType() PyErr_Occurred() +#endif + +/* PyErrFetchRestore.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL) +#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A6 +#define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL)) +#else +#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) +#endif +#else +#define __Pyx_PyErr_Clear() PyErr_Clear() +#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) +#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) +#endif + /* PyObjectGetAttrStr.proto */ #if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name); @@ -1026,9 +1632,76 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) #endif +/* PyObjectGetAttrStrNoError.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name); + /* GetBuiltinName.proto */ static PyObject *__Pyx_GetBuiltinName(PyObject *name); +/* TupleAndListFromArray.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject* __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n); +static CYTHON_INLINE PyObject* __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n); +#endif + +/* IncludeStringH.proto */ +#include + +/* BytesEquals.proto */ +static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); + +/* UnicodeEquals.proto */ +static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); + +/* fastcall.proto */ +#if CYTHON_AVOID_BORROWED_REFS + #define __Pyx_Arg_VARARGS(args, i) PySequence_GetItem(args, i) +#elif CYTHON_ASSUME_SAFE_MACROS + #define __Pyx_Arg_VARARGS(args, i) PyTuple_GET_ITEM(args, i) +#else + #define __Pyx_Arg_VARARGS(args, i) PyTuple_GetItem(args, i) +#endif +#if CYTHON_AVOID_BORROWED_REFS + #define __Pyx_Arg_NewRef_VARARGS(arg) __Pyx_NewRef(arg) + #define __Pyx_Arg_XDECREF_VARARGS(arg) Py_XDECREF(arg) +#else + #define __Pyx_Arg_NewRef_VARARGS(arg) arg + #define __Pyx_Arg_XDECREF_VARARGS(arg) +#endif +#define __Pyx_NumKwargs_VARARGS(kwds) PyDict_Size(kwds) +#define __Pyx_KwValues_VARARGS(args, nargs) NULL +#define __Pyx_GetKwValue_VARARGS(kw, kwvalues, s) __Pyx_PyDict_GetItemStrWithError(kw, s) +#define __Pyx_KwargsAsDict_VARARGS(kw, kwvalues) PyDict_Copy(kw) +#if CYTHON_METH_FASTCALL + #define __Pyx_Arg_FASTCALL(args, i) args[i] + #define __Pyx_NumKwargs_FASTCALL(kwds) PyTuple_GET_SIZE(kwds) + #define __Pyx_KwValues_FASTCALL(args, nargs) ((args) + (nargs)) + static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s); +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 + CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues); + #else + #define __Pyx_KwargsAsDict_FASTCALL(kw, kwvalues) _PyStack_AsDict(kwvalues, kw) + #endif + #define __Pyx_Arg_NewRef_FASTCALL(arg) arg /* no-op, __Pyx_Arg_FASTCALL is direct and this needs + to have the same reference counting */ + #define __Pyx_Arg_XDECREF_FASTCALL(arg) +#else + #define __Pyx_Arg_FASTCALL __Pyx_Arg_VARARGS + #define __Pyx_NumKwargs_FASTCALL __Pyx_NumKwargs_VARARGS + #define __Pyx_KwValues_FASTCALL __Pyx_KwValues_VARARGS + #define __Pyx_GetKwValue_FASTCALL __Pyx_GetKwValue_VARARGS + #define __Pyx_KwargsAsDict_FASTCALL __Pyx_KwargsAsDict_VARARGS + #define __Pyx_Arg_NewRef_FASTCALL(arg) __Pyx_Arg_NewRef_VARARGS(arg) + #define __Pyx_Arg_XDECREF_FASTCALL(arg) __Pyx_Arg_XDECREF_VARARGS(arg) +#endif +#if CYTHON_COMPILING_IN_CPYTHON && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS +#define __Pyx_ArgsSlice_VARARGS(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_VARARGS(args, start), stop - start) +#define __Pyx_ArgsSlice_FASTCALL(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_FASTCALL(args, start), stop - start) +#else +#define __Pyx_ArgsSlice_VARARGS(args, start, stop) PyTuple_GetSlice(args, start, stop) +#define __Pyx_ArgsSlice_FASTCALL(args, start, stop) PyTuple_GetSlice(args, start, stop) +#endif + /* RaiseArgTupleInvalid.proto */ static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); @@ -1037,13 +1710,14 @@ static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); /* ParseKeywords.proto */ -static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ - PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject *const *kwvalues, + PyObject **argnames[], + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name); /* ArgTypeTest.proto */ #define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\ - ((likely((Py_TYPE(obj) == type) | (none_allowed && (obj == Py_None)))) ? 1 :\ + ((likely(__Pyx_IS_TYPE(obj, type) | (none_allowed && (obj == Py_None)))) ? 1 :\ __Pyx__ArgTypeTest(obj, type, name, exact)) static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact); @@ -1116,42 +1790,39 @@ static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_ve static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name); #endif -/* PyCFunctionFastCall.proto */ -#if CYTHON_FAST_PYCCALL -static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs); -#else -#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) -#endif - /* PyFunctionFastCall.proto */ #if CYTHON_FAST_PYCALL +#if !CYTHON_VECTORCALL #define __Pyx_PyFunction_FastCall(func, args, nargs)\ __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) -#if 1 || PY_VERSION_HEX < 0x030600B1 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs); -#else -#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs) #endif #define __Pyx_BUILD_ASSERT_EXPR(cond)\ (sizeof(char [1 - 2*!(cond)]) - 1) #ifndef Py_MEMBER_SIZE #define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member) #endif -#if CYTHON_FAST_PYCALL - static size_t __pyx_pyframe_localsplus_offset = 0; +#if !CYTHON_VECTORCALL +#if PY_VERSION_HEX >= 0x03080000 #include "frameobject.h" -#if PY_VERSION_HEX >= 0x030b00a6 +#if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API #ifndef Py_BUILD_CORE #define Py_BUILD_CORE 1 #endif #include "internal/pycore_frame.h" #endif + #define __Pxy_PyFrame_Initialize_Offsets() + #define __Pyx_PyFrame_GetLocalsplus(frame) ((frame)->f_localsplus) +#else + static size_t __pyx_pyframe_localsplus_offset = 0; + #include "frameobject.h" #define __Pxy_PyFrame_Initialize_Offsets()\ ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\ (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus))) #define __Pyx_PyFrame_GetLocalsplus(frame)\ (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset)) -#endif // CYTHON_FAST_PYCALL +#endif +#endif #endif /* PyObjectCall.proto */ @@ -1161,23 +1832,48 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) #endif -/* PyObjectCall2Args.proto */ -static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2); - /* PyObjectCallMethO.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); #endif -/* PyObjectCallOneArg.proto */ -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); +/* PyObjectFastCall.proto */ +#define __Pyx_PyObject_FastCall(func, args, nargs) __Pyx_PyObject_FastCallDict(func, args, (size_t)(nargs), NULL) +static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs); -/* PyObjectCallNoArg.proto */ -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); +/* RaiseUnexpectedTypeError.proto */ +static int __Pyx_RaiseUnexpectedTypeError(const char *expected, PyObject *obj); + +/* UnicodeConcatInPlace.proto */ +# if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 + #if CYTHON_REFNANNY + #define __Pyx_PyUnicode_ConcatInPlace(left, right) __Pyx_PyUnicode_ConcatInPlaceImpl(&left, right, __pyx_refnanny) + #else + #define __Pyx_PyUnicode_ConcatInPlace(left, right) __Pyx_PyUnicode_ConcatInPlaceImpl(&left, right) + #endif + static CYTHON_INLINE PyObject *__Pyx_PyUnicode_ConcatInPlaceImpl(PyObject **p_left, PyObject *right + #if CYTHON_REFNANNY + , void* __pyx_refnanny + #endif + ); +#else +#define __Pyx_PyUnicode_ConcatInPlace __Pyx_PyUnicode_Concat +#endif +#define __Pyx_PyUnicode_ConcatInPlaceSafe(left, right) ((unlikely((left) == Py_None) || unlikely((right) == Py_None)) ?\ + PyNumber_InPlaceAdd(left, right) : __Pyx_PyUnicode_ConcatInPlace(left, right)) + +/* StrConcatInPlace.proto */ +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyStr_Concat __Pyx_PyUnicode_Concat + #define __Pyx_PyStr_ConcatInPlace __Pyx_PyUnicode_ConcatInPlace #else -#define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL) + #define __Pyx_PyStr_Concat PyNumber_Add + #define __Pyx_PyStr_ConcatInPlace PyNumber_InPlaceAdd #endif +#define __Pyx_PyStr_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ + PyNumber_Add(a, b) : __Pyx_PyStr_Concat(a, b)) +#define __Pyx_PyStr_ConcatInPlaceSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ + PyNumber_InPlaceAdd(a, b) : __Pyx_PyStr_ConcatInPlace(a, b)) /* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); @@ -1198,7 +1894,11 @@ static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { Py_ssize_t len = Py_SIZE(list); if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) { Py_INCREF(x); + #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 + L->ob_item[len] = x; + #else PyList_SET_ITEM(list, len, x); + #endif __Pyx_SET_SIZE(list, len + 1); return 0; } @@ -1220,21 +1920,10 @@ static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key); #endif /* GetTopmostException.proto */ -#if CYTHON_USE_EXC_INFO_STACK +#if CYTHON_USE_EXC_INFO_STACK && CYTHON_FAST_THREAD_STATE static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate); #endif -/* PyThreadStateGet.proto */ -#if CYTHON_FAST_THREAD_STATE -#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; -#define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current; -#define __Pyx_PyErr_Occurred() __pyx_tstate->curexc_type -#else -#define __Pyx_PyThreadState_declare -#define __Pyx_PyThreadState_assign -#define __Pyx_PyErr_Occurred() PyErr_Occurred() -#endif - /* SaveResetException.proto */ #if CYTHON_FAST_THREAD_STATE #define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) @@ -1246,14 +1935,6 @@ static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject #define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) #endif -/* PyErrExceptionMatches.proto */ -#if CYTHON_FAST_THREAD_STATE -#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) -static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); -#else -#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) -#endif - /* GetException.proto */ #if CYTHON_FAST_THREAD_STATE #define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) @@ -1262,6 +1943,12 @@ static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); #endif +/* PyObjectCall2Args.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2); + +/* PyObjectCallOneArg.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); + /* PyObjectGetMethod.proto */ static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method); @@ -1279,6 +1966,15 @@ static CYTHON_INLINE int __Pyx_set_iter_next( Py_ssize_t* ppos, PyObject **value, int source_is_set); +/* PyDictContains.proto */ +static CYTHON_INLINE int __Pyx_PyDict_ContainsTF(PyObject* item, PyObject* dict, int eq) { + int result = PyDict_Contains(dict, item); + return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); +} + +/* PyObjectCallNoArg.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); + /* PyObjectCallMethod0.proto */ static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name); @@ -1306,25 +2002,90 @@ static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos, PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict); +/* IncludeStructmemberH.proto */ +#include + +/* FixUpExtensionType.proto */ +#if CYTHON_USE_TYPE_SPECS +static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type); +#endif + +/* FetchSharedCythonModule.proto */ +static PyObject *__Pyx_FetchSharedCythonABIModule(void); + /* FetchCommonType.proto */ +#if !CYTHON_USE_TYPE_SPECS static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type); +#else +static PyTypeObject* __Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases); +#endif + +/* PyMethodNew.proto */ +#if CYTHON_COMPILING_IN_LIMITED_API +static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { + PyObject *typesModule=NULL, *methodType=NULL, *result=NULL; + CYTHON_UNUSED_VAR(typ); + if (!self) + return __Pyx_NewRef(func); + typesModule = PyImport_ImportModule("types"); + if (!typesModule) return NULL; + methodType = PyObject_GetAttrString(typesModule, "MethodType"); + Py_DECREF(typesModule); + if (!methodType) return NULL; + result = PyObject_CallFunctionObjArgs(methodType, func, self, NULL); + Py_DECREF(methodType); + return result; +} +#elif PY_MAJOR_VERSION >= 3 +static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { + CYTHON_UNUSED_VAR(typ); + if (!self) + return __Pyx_NewRef(func); + return PyMethod_New(func, self); +} +#else + #define __Pyx_PyMethod_New PyMethod_New +#endif + +/* PyVectorcallFastCallDict.proto */ +#if CYTHON_METH_FASTCALL +static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw); +#endif /* CythonFunctionShared.proto */ -#define __Pyx_CyFunction_USED 1 +#define __Pyx_CyFunction_USED #define __Pyx_CYFUNCTION_STATICMETHOD 0x01 #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 #define __Pyx_CYFUNCTION_CCLASS 0x04 +#define __Pyx_CYFUNCTION_COROUTINE 0x08 #define __Pyx_CyFunction_GetClosure(f)\ (((__pyx_CyFunctionObject *) (f))->func_closure) -#define __Pyx_CyFunction_GetClassObj(f)\ - (((__pyx_CyFunctionObject *) (f))->func_classobj) +#if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API + #define __Pyx_CyFunction_GetClassObj(f)\ + (((__pyx_CyFunctionObject *) (f))->func_classobj) +#else + #define __Pyx_CyFunction_GetClassObj(f)\ + ((PyObject*) ((PyCMethodObject *) (f))->mm_class) +#endif +#define __Pyx_CyFunction_SetClassObj(f, classobj)\ + __Pyx__CyFunction_SetClassObj((__pyx_CyFunctionObject *) (f), (classobj)) #define __Pyx_CyFunction_Defaults(type, f)\ ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) #define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) typedef struct { +#if CYTHON_COMPILING_IN_LIMITED_API + PyObject_HEAD + PyObject *func; +#elif PY_VERSION_HEX < 0x030900B1 PyCFunctionObject func; -#if PY_VERSION_HEX < 0x030500A0 +#else + PyCMethodObject func; +#endif +#if CYTHON_BACKPORT_VECTORCALL + __pyx_vectorcallfunc func_vectorcall; +#endif +#if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API PyObject *func_weakreflist; #endif PyObject *func_dict; @@ -1334,23 +2095,32 @@ typedef struct { PyObject *func_globals; PyObject *func_code; PyObject *func_closure; +#if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API PyObject *func_classobj; +#endif void *defaults; int defaults_pyobjects; - size_t defaults_size; // used by FusedFunction for copying defaults + size_t defaults_size; int flags; PyObject *defaults_tuple; PyObject *defaults_kwdict; PyObject *(*defaults_getter)(PyObject *); PyObject *func_annotations; + PyObject *func_is_coroutine; } __pyx_CyFunctionObject; -static PyTypeObject *__pyx_CyFunctionType = 0; -#define __Pyx_CyFunction_Check(obj) (__Pyx_TypeCheck(obj, __pyx_CyFunctionType)) +#undef __Pyx_CyOrPyCFunction_Check +#define __Pyx_CyFunction_Check(obj) __Pyx_TypeCheck(obj, __pyx_CyFunctionType) +#define __Pyx_CyOrPyCFunction_Check(obj) __Pyx_TypeCheck2(obj, __pyx_CyFunctionType, &PyCFunction_Type) +#define __Pyx_CyFunction_CheckExact(obj) __Pyx_IS_TYPE(obj, __pyx_CyFunctionType) +static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc); +#undef __Pyx_IsSameCFunction +#define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCyOrCFunction(func, cfunc) static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml, int flags, PyObject* qualname, - PyObject *self, + PyObject *closure, PyObject *module, PyObject *globals, PyObject* code); +static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj); static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m, size_t size, int pyobjects); @@ -1360,7 +2130,18 @@ static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, PyObject *dict); static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, PyObject *dict); -static int __pyx_CyFunction_init(void); +static int __pyx_CyFunction_init(PyObject *module); +#if CYTHON_METH_FASTCALL +static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); +static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); +static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); +static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); +#if CYTHON_BACKPORT_VECTORCALL +#define __Pyx_CyFunction_func_vectorcall(f) (((__pyx_CyFunctionObject*)f)->func_vectorcall) +#else +#define __Pyx_CyFunction_func_vectorcall(f) (((PyCFunctionObject*)f)->vectorcall) +#endif +#endif /* CythonFunction.proto */ static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, @@ -1376,7 +2157,11 @@ static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { Py_ssize_t len = Py_SIZE(list); if (likely(L->allocated > len)) { Py_INCREF(x); + #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 + L->ob_item[len] = x; + #else PyList_SET_ITEM(list, len, x); + #endif __Pyx_SET_SIZE(list, len + 1); return 0; } @@ -1386,15 +2171,6 @@ static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { #define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) #endif -/* IncludeStringH.proto */ -#include - -/* BytesEquals.proto */ -static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); - -/* UnicodeEquals.proto */ -static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); - /* StrEquals.proto */ #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals @@ -1404,7 +2180,7 @@ static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int /* ListExtend.proto */ static CYTHON_INLINE int __Pyx_PyList_Extend(PyObject* L, PyObject* v) { -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 PyObject* none = _PyList_Extend((PyListObject*)L, v); if (unlikely(!none)) return -1; @@ -1423,15 +2199,7 @@ static CYTHON_INLINE int __Pyx_PyList_Extend(PyObject* L, PyObject* v) { #define __Pyx_PyString_Join PyUnicode_Join #define __Pyx_PyBaseString_Join PyUnicode_Join #endif -#if CYTHON_COMPILING_IN_CPYTHON - #if PY_MAJOR_VERSION < 3 - #define __Pyx_PyBytes_Join _PyString_Join - #else - #define __Pyx_PyBytes_Join _PyBytes_Join - #endif -#else static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values); -#endif /* SliceObject.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice( @@ -1440,39 +2208,22 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice( int has_cstart, int has_cstop, int wraparound); /* PyIntCompare.proto */ -static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, long inplace); - -/* PyErrFetchRestore.proto */ -#if CYTHON_FAST_THREAD_STATE -#define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL) -#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) -#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) -#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) -#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) -static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); -static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); -#if CYTHON_COMPILING_IN_CPYTHON -#define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL)) -#else -#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) -#endif -#else -#define __Pyx_PyErr_Clear() PyErr_Clear() -#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) -#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) -#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) -#define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb) -#define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb) -#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) -#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) -#endif +static CYTHON_INLINE int __Pyx_PyInt_BoolEqObjC(PyObject *op1, PyObject *op2, long intval, long inplace); /* RaiseException.proto */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_MultiplyObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check); +#else +#define __Pyx_PyInt_MultiplyObjC(op1, op2, intval, inplace, zerodivision_check)\ + (inplace ? PyNumber_InPlaceMultiply(op1, op2) : PyNumber_Multiply(op1, op2)) +#endif + /* ObjectGetItem.proto */ #if CYTHON_USE_TYPE_SLOTS -static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key); +static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key); #else #define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key) #endif @@ -1480,6 +2231,12 @@ static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* k /* Import.proto */ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); +/* ImportDottedModule.proto */ +static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple); +#if PY_MAJOR_VERSION >= 3 +static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple); +#endif + /* ImportFrom.proto */ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); @@ -1491,6 +2248,7 @@ static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line); #endif /* CodeObjectCache.proto */ +#if !CYTHON_COMPILING_IN_LIMITED_API typedef struct { PyCodeObject* code_object; int code_line; @@ -1504,13 +2262,14 @@ static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); static PyCodeObject *__pyx_find_code_object(int code_line); static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); +#endif /* AddTraceback.proto */ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); /* GCCDiagnostics.proto */ -#if defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6)) +#if !defined(__INTEL_COMPILER) && defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6)) #define __Pyx_HAS_GCC_DIAGNOSTIC #endif @@ -1535,46 +2294,70 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_PY_LONG_LONG(unsigned P /* CIntFromPy.proto */ static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_As_unsigned_PY_LONG_LONG(PyObject *); +/* FormatTypeName.proto */ +#if CYTHON_COMPILING_IN_LIMITED_API +typedef PyObject *__Pyx_TypeName; +#define __Pyx_FMT_TYPENAME "%U" +static __Pyx_TypeName __Pyx_PyType_GetName(PyTypeObject* tp); +#define __Pyx_DECREF_TypeName(obj) Py_XDECREF(obj) +#else +typedef const char *__Pyx_TypeName; +#define __Pyx_FMT_TYPENAME "%.200s" +#define __Pyx_PyType_GetName(tp) ((tp)->tp_name) +#define __Pyx_DECREF_TypeName(obj) +#endif + /* CIntFromPy.proto */ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); /* FastTypeChecks.proto */ #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type) +#define __Pyx_TypeCheck2(obj, type1, type2) __Pyx_IsAnySubtype2(Py_TYPE(obj), (PyTypeObject *)type1, (PyTypeObject *)type2) static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b); +static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b); static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type); static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2); #else #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#define __Pyx_TypeCheck2(obj, type1, type2) (PyObject_TypeCheck(obj, (PyTypeObject *)type1) || PyObject_TypeCheck(obj, (PyTypeObject *)type2)) #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type) #define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2)) #endif +#define __Pyx_PyErr_ExceptionMatches2(err1, err2) __Pyx_PyErr_GivenExceptionMatches2(__Pyx_PyErr_CurrentExceptionType(), err1, err2) #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) /* CheckBinaryVersion.proto */ -static int __Pyx_check_binary_version(void); +static unsigned long __Pyx_get_runtime_version(void); +static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer); /* InitStrings.proto */ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); +/* #### Code section: module_declarations ### */ -/* Module declarations from 'nanovar.nv_bam_parser' */ +/* Module declarations from "nanovar.nv_bam_parser" */ static PyObject *__pyx_f_7nanovar_13nv_bam_parser_read_cigar(PyObject *, float, float, unsigned int, unsigned int, unsigned int); /*proto*/ +/* #### Code section: typeinfo ### */ +/* #### Code section: before_global_var ### */ #define __Pyx_MODULE_NAME "nanovar.nv_bam_parser" extern int __pyx_module_is_main_nanovar__nv_bam_parser; int __pyx_module_is_main_nanovar__nv_bam_parser = 0; -/* Implementation of 'nanovar.nv_bam_parser' */ +/* Implementation of "nanovar.nv_bam_parser" */ +/* #### Code section: global_var ### */ static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_open; static PyObject *__pyx_builtin_KeyError; static PyObject *__pyx_builtin_sorted; static PyObject *__pyx_builtin_sum; static PyObject *__pyx_builtin_round; +/* #### Code section: string_decls ### */ static const char __pyx_k_i[] = "i"; static const char __pyx_k_r[] = "r"; static const char __pyx_k_w[] = "w"; static const char __pyx_k_x[] = "x"; +static const char __pyx_k_y[] = "y"; static const char __pyx_k_AS[] = "AS"; static const char __pyx_k_NM[] = "NM"; static const char __pyx_k__2[] = ">"; @@ -1587,6 +2370,9 @@ static const char __pyx_k_mm[] = "mm"; static const char __pyx_k_nm[] = "nm"; static const char __pyx_k_os[] = "os"; static const char __pyx_k_rb[] = "rb"; +static const char __pyx_k__10[] = "*"; +static const char __pyx_k__11[] = "."; +static const char __pyx_k__25[] = "?"; static const char __pyx_k_adv[] = "adv"; static const char __pyx_k_aln[] = "aln"; static const char __pyx_k_bam[] = "bam"; @@ -1618,6 +2404,7 @@ static const char __pyx_k_read[] = "read"; static const char __pyx_k_rend[] = "rend"; static const char __pyx_k_save[] = "save"; static const char __pyx_k_seed[] = "seed"; +static const char __pyx_k_spec[] = "__spec__"; static const char __pyx_k_sseg[] = "sseg"; static const char __pyx_k_test[] = "__test__"; static const char __pyx_k_close[] = "close"; @@ -1701,7 +2488,10 @@ static const char __pyx_k_repeat_dict[] = "repeat_dict"; static const char __pyx_k_total_lines[] = "total_lines"; static const char __pyx_k_total_score[] = "total_score"; static const char __pyx_k_entry_parser[] = "entry_parser"; +static const char __pyx_k_initializing[] = "_initializing"; +static const char __pyx_k_is_coroutine[] = "_is_coroutine"; static const char __pyx_k_AlignmentFile[] = "AlignmentFile"; +static const char __pyx_k_class_getitem[] = "__class_getitem__"; static const char __pyx_k_fail_qual_len[] = "fail_qual_len"; static const char __pyx_k_fail_qual_seq[] = "fail_qual_seq"; static const char __pyx_k_reference_end[] = "reference_end"; @@ -1719,6 +2509,7 @@ static const char __pyx_k_breakpoint_parser[] = "breakpoint_parser"; static const char __pyx_k_infer_read_length[] = "infer_read_length"; static const char __pyx_k_info_parse_simple[] = "info_parse_simple"; static const char __pyx_k_nv_bam_parser_pyx[] = "nv_bam_parser.pyx"; +static const char __pyx_k_asyncio_coroutines[] = "asyncio.coroutines"; static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; static const char __pyx_k_nanovar_nv_bam_parser[] = "nanovar.nv_bam_parser"; static const char __pyx_k_query_alignment_length[] = "query_alignment_length"; @@ -1728,162 +2519,7 @@ static const char __pyx_k_s_s_s_s_s_s_s_s_s_s_s_s_s_s[] = "%s\t%s\t%s\t%s\t%s\t% static const char __pyx_k_Parses_BAM_file_and_analyse_CIG[] = "\nParses BAM file and analyse CIGARS\n\nCopyright (C) 2021 Tham Cheng Yong\n\nThis file is part of NanoVar.\n\nNanoVar is free software: you can redistribute it and/or modify\nit under the terms of the GNU General Public License as published by\nthe Free Software Foundation, either version 3 of the License, or\n(at your option) any later version.\n\nNanoVar is distributed in the hope that it will be useful,\nbut WITHOUT ANY WARRANTY; without even the implied warranty of\nMERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\nGNU General Public License for more details.\n\nYou should have received a copy of the GNU General Public License\nalong with NanoVar. If not, see .\n"; static const char __pyx_k_Error_Unrecognized_CIGAR_transla[] = "Error: Unrecognized CIGAR translated symbol \"%s\""; static const char __pyx_k_Gap_dictionary_successfully_load[] = "Gap dictionary successfully loaded"; -static PyObject *__pyx_n_s_AS; -static PyObject *__pyx_n_s_AlignmentFile; -static PyObject *__pyx_kp_s_Error_Unrecognized_CIGAR_transla; -static PyObject *__pyx_kp_s_Gap_dictionary_not_loaded; -static PyObject *__pyx_kp_s_Gap_dictionary_successfully_load; -static PyObject *__pyx_n_s_KeyError; -static PyObject *__pyx_n_s_NM; -static PyObject *__pyx_kp_s__2; -static PyObject *__pyx_kp_s__3; -static PyObject *__pyx_kp_s__4; -static PyObject *__pyx_kp_s__5; -static PyObject *__pyx_kp_s__8; -static PyObject *__pyx_kp_s__9; -static PyObject *__pyx_n_s_add_sup_seq; -static PyObject *__pyx_n_s_adv; -static PyObject *__pyx_n_s_align_priority; -static PyObject *__pyx_n_s_aln; -static PyObject *__pyx_n_s_append; -static PyObject *__pyx_n_s_bam; -static PyObject *__pyx_n_s_bam_parse; -static PyObject *__pyx_n_s_bam_parse_locals_lambda; -static PyObject *__pyx_n_s_basecov; -static PyObject *__pyx_n_s_beddata; -static PyObject *__pyx_n_s_breakpoint_parser; -static PyObject *__pyx_n_s_cigar_tup; -static PyObject *__pyx_n_s_cigartuples; -static PyObject *__pyx_n_s_cline_in_traceback; -static PyObject *__pyx_n_s_close; -static PyObject *__pyx_n_s_contig; -static PyObject *__pyx_n_s_contig_collect; -static PyObject *__pyx_n_s_contig_omit; -static PyObject *__pyx_n_s_contigs; -static PyObject *__pyx_n_s_critical; -static PyObject *__pyx_n_s_del_list; -static PyObject *__pyx_n_s_detect_out; -static PyObject *__pyx_n_s_end; -static PyObject *__pyx_n_s_entry; -static PyObject *__pyx_n_s_entry_parser; -static PyObject *__pyx_n_s_fail_qual_len; -static PyObject *__pyx_n_s_fail_qual_seq; -static PyObject *__pyx_n_s_fasta; -static PyObject *__pyx_n_s_fasta2; -static PyObject *__pyx_n_s_filter_file; -static PyObject *__pyx_n_s_final; -static PyObject *__pyx_n_s_flag; -static PyObject *__pyx_n_s_gap_path; -static PyObject *__pyx_n_s_gapdict; -static PyObject *__pyx_n_s_gaps; -static PyObject *__pyx_n_s_get_tag; -static PyObject *__pyx_n_s_i; -static PyObject *__pyx_n_s_import; -static PyObject *__pyx_n_s_infer_read_length; -static PyObject *__pyx_n_s_info; -static PyObject *__pyx_n_s_info_parse; -static PyObject *__pyx_n_s_info_parse_simple; -static PyObject *__pyx_n_s_ins_list; -static PyObject *__pyx_n_s_join; -static PyObject *__pyx_n_s_key; -static PyObject *__pyx_n_s_line; -static PyObject *__pyx_n_s_lines; -static PyObject *__pyx_n_s_lines_sort; -static PyObject *__pyx_n_s_logging; -static PyObject *__pyx_n_s_main; -static PyObject *__pyx_n_s_main_dict; -static PyObject *__pyx_n_s_makegapdict; -static PyObject *__pyx_n_s_mapping_quality; -static PyObject *__pyx_n_s_matches; -static PyObject *__pyx_n_s_minalign; -static PyObject *__pyx_n_s_minlen; -static PyObject *__pyx_n_s_mismatch; -static PyObject *__pyx_n_s_mm; -static PyObject *__pyx_kp_s_mm_2; -static PyObject *__pyx_n_s_name; -static PyObject *__pyx_n_s_nanovar_nv_bam_parser; -static PyObject *__pyx_n_s_ndel; -static PyObject *__pyx_n_s_nins; -static PyObject *__pyx_n_s_nm; -static PyObject *__pyx_n_s_nsegs; -static PyObject *__pyx_kp_s_nv_bam_parser_pyx; -static PyObject *__pyx_n_s_nv_detect_algo; -static PyObject *__pyx_n_s_nv_parser; -static PyObject *__pyx_n_s_open; -static PyObject *__pyx_n_s_os; -static PyObject *__pyx_n_s_out1; -static PyObject *__pyx_n_s_out2; -static PyObject *__pyx_n_s_ovlt; -static PyObject *__pyx_n_s_parse_dict; -static PyObject *__pyx_n_s_path; -static PyObject *__pyx_n_s_pident; -static PyObject *__pyx_n_s_priority; -static PyObject *__pyx_n_s_pysam; -static PyObject *__pyx_n_s_qlen; -static PyObject *__pyx_n_s_qname; -static PyObject *__pyx_n_s_qseg; -static PyObject *__pyx_n_s_qstart; -static PyObject *__pyx_n_s_qstretch; -static PyObject *__pyx_n_s_query_alignment_length; -static PyObject *__pyx_n_s_query_name; -static PyObject *__pyx_n_s_query_sequence; -static PyObject *__pyx_n_s_query_sign; -static PyObject *__pyx_n_s_r; -static PyObject *__pyx_n_s_range; -static PyObject *__pyx_n_s_rb; -static PyObject *__pyx_n_s_read; -static PyObject *__pyx_n_s_readlen; -static PyObject *__pyx_n_s_reference_end; -static PyObject *__pyx_n_s_reference_name; -static PyObject *__pyx_n_s_reference_start; -static PyObject *__pyx_n_s_rend; -static PyObject *__pyx_n_s_repeat_dict; -static PyObject *__pyx_n_s_reverse; -static PyObject *__pyx_n_s_rgapdata; -static PyObject *__pyx_n_s_rlendict; -static PyObject *__pyx_n_s_rname; -static PyObject *__pyx_n_s_round; -static PyObject *__pyx_n_s_rstart; -static PyObject *__pyx_kp_s_s_s_s_s_s; -static PyObject *__pyx_kp_s_s_s_s_s_s_s_s_s_s_s_s_s_s_s; -static PyObject *__pyx_n_s_sam; -static PyObject *__pyx_n_s_save; -static PyObject *__pyx_n_s_score; -static PyObject *__pyx_n_s_seed; -static PyObject *__pyx_n_s_seg; -static PyObject *__pyx_n_s_set_verbosity; -static PyObject *__pyx_n_s_sig_index; -static PyObject *__pyx_n_s_sorted; -static PyObject *__pyx_n_s_split; -static PyObject *__pyx_n_s_splitlines; -static PyObject *__pyx_n_s_splitpct; -static PyObject *__pyx_n_s_sseg; -static PyObject *__pyx_n_s_start; -static PyObject *__pyx_n_s_strand; -static PyObject *__pyx_n_s_subdata; -static PyObject *__pyx_n_s_subratio; -static PyObject *__pyx_n_s_substart; -static PyObject *__pyx_n_s_substretch; -static PyObject *__pyx_n_s_sum; -static PyObject *__pyx_n_s_sup; -static PyObject *__pyx_n_s_sv_detect; -static PyObject *__pyx_n_s_temp1; -static PyObject *__pyx_kp_s_temp1_fa; -static PyObject *__pyx_kp_s_temp2_fa; -static PyObject *__pyx_n_s_test; -static PyObject *__pyx_n_s_total_del; -static PyObject *__pyx_n_s_total_gap; -static PyObject *__pyx_n_s_total_ins; -static PyObject *__pyx_n_s_total_lines; -static PyObject *__pyx_n_s_total_mismatch; -static PyObject *__pyx_n_s_total_out; -static PyObject *__pyx_n_s_total_score; -static PyObject *__pyx_n_s_total_subdata; -static PyObject *__pyx_n_s_tup; -static PyObject *__pyx_n_s_w; -static PyObject *__pyx_n_s_wk_dir; -static PyObject *__pyx_n_s_write; -static PyObject *__pyx_n_s_x; +/* #### Code section: decls ### */ static PyObject *__pyx_lambda_funcdef_lambda(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_x); /* proto */ static PyObject *__pyx_lambda_funcdef_lambda1(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_y); /* proto */ static PyObject *__pyx_lambda_funcdef_lambda2(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_x); /* proto */ @@ -1894,40 +2530,924 @@ static PyObject *__pyx_pf_7nanovar_13nv_bam_parser_4info_parse_simple(CYTHON_UNU static PyObject *__pyx_pf_7nanovar_13nv_bam_parser_6query_sign(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_start, PyObject *__pyx_v_end, PyObject *__pyx_v_flag, PyObject *__pyx_v_readlen); /* proto */ static PyObject *__pyx_pf_7nanovar_13nv_bam_parser_8align_priority(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_flag); /* proto */ static PyObject *__pyx_pf_7nanovar_13nv_bam_parser_10makegapdict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_gap_path, PyObject *__pyx_v_contig_omit); /* proto */ -static PyObject *__pyx_float_0_0; -static PyObject *__pyx_int_0; -static PyObject *__pyx_int_1; -static PyObject *__pyx_int_2; -static PyObject *__pyx_int_3; -static PyObject *__pyx_int_4; -static PyObject *__pyx_int_5; -static PyObject *__pyx_int_6; -static PyObject *__pyx_int_16; -static PyObject *__pyx_int_20; -static PyObject *__pyx_int_30; -static PyObject *__pyx_int_40; -static PyObject *__pyx_int_100; -static PyObject *__pyx_int_200; -static PyObject *__pyx_int_256; -static PyObject *__pyx_int_272; -static PyObject *__pyx_int_2048; -static PyObject *__pyx_int_2064; -static PyObject *__pyx_tuple_; -static PyObject *__pyx_slice__6; -static PyObject *__pyx_slice__7; -static PyObject *__pyx_tuple__10; -static PyObject *__pyx_tuple__12; -static PyObject *__pyx_tuple__14; -static PyObject *__pyx_tuple__16; -static PyObject *__pyx_tuple__18; -static PyObject *__pyx_tuple__20; -static PyObject *__pyx_codeobj__11; -static PyObject *__pyx_codeobj__13; -static PyObject *__pyx_codeobj__15; -static PyObject *__pyx_codeobj__17; -static PyObject *__pyx_codeobj__19; -static PyObject *__pyx_codeobj__21; -/* Late includes */ +/* #### Code section: late_includes ### */ +/* #### Code section: module_state ### */ +typedef struct { + PyObject *__pyx_d; + PyObject *__pyx_b; + PyObject *__pyx_cython_runtime; + PyObject *__pyx_empty_tuple; + PyObject *__pyx_empty_bytes; + PyObject *__pyx_empty_unicode; + #ifdef __Pyx_CyFunction_USED + PyTypeObject *__pyx_CyFunctionType; + #endif + #ifdef __Pyx_FusedFunction_USED + PyTypeObject *__pyx_FusedFunctionType; + #endif + #ifdef __Pyx_Generator_USED + PyTypeObject *__pyx_GeneratorType; + #endif + #ifdef __Pyx_IterableCoroutine_USED + PyTypeObject *__pyx_IterableCoroutineType; + #endif + #ifdef __Pyx_Coroutine_USED + PyTypeObject *__pyx_CoroutineAwaitType; + #endif + #ifdef __Pyx_Coroutine_USED + PyTypeObject *__pyx_CoroutineType; + #endif + #if CYTHON_USE_MODULE_STATE + #endif + PyObject *__pyx_n_s_AS; + PyObject *__pyx_n_s_AlignmentFile; + PyObject *__pyx_kp_s_Error_Unrecognized_CIGAR_transla; + PyObject *__pyx_kp_s_Gap_dictionary_not_loaded; + PyObject *__pyx_kp_s_Gap_dictionary_successfully_load; + PyObject *__pyx_n_s_KeyError; + PyObject *__pyx_n_s_NM; + PyObject *__pyx_n_s__10; + PyObject *__pyx_kp_u__11; + PyObject *__pyx_kp_s__2; + PyObject *__pyx_n_s__25; + PyObject *__pyx_kp_s__3; + PyObject *__pyx_kp_s__4; + PyObject *__pyx_kp_s__5; + PyObject *__pyx_kp_s__8; + PyObject *__pyx_kp_s__9; + PyObject *__pyx_n_s_add_sup_seq; + PyObject *__pyx_n_s_adv; + PyObject *__pyx_n_s_align_priority; + PyObject *__pyx_n_s_aln; + PyObject *__pyx_n_s_append; + PyObject *__pyx_n_s_asyncio_coroutines; + PyObject *__pyx_n_s_bam; + PyObject *__pyx_n_s_bam_parse; + PyObject *__pyx_n_s_bam_parse_locals_lambda; + PyObject *__pyx_n_s_basecov; + PyObject *__pyx_n_s_beddata; + PyObject *__pyx_n_s_breakpoint_parser; + PyObject *__pyx_n_s_cigar_tup; + PyObject *__pyx_n_s_cigartuples; + PyObject *__pyx_n_s_class_getitem; + PyObject *__pyx_n_s_cline_in_traceback; + PyObject *__pyx_n_s_close; + PyObject *__pyx_n_s_contig; + PyObject *__pyx_n_s_contig_collect; + PyObject *__pyx_n_s_contig_omit; + PyObject *__pyx_n_s_contigs; + PyObject *__pyx_n_s_critical; + PyObject *__pyx_n_s_del_list; + PyObject *__pyx_n_s_detect_out; + PyObject *__pyx_n_s_end; + PyObject *__pyx_n_s_entry; + PyObject *__pyx_n_s_entry_parser; + PyObject *__pyx_n_s_fail_qual_len; + PyObject *__pyx_n_s_fail_qual_seq; + PyObject *__pyx_n_s_fasta; + PyObject *__pyx_n_s_fasta2; + PyObject *__pyx_n_s_filter_file; + PyObject *__pyx_n_s_final; + PyObject *__pyx_n_s_flag; + PyObject *__pyx_n_s_gap_path; + PyObject *__pyx_n_s_gapdict; + PyObject *__pyx_n_s_gaps; + PyObject *__pyx_n_s_get_tag; + PyObject *__pyx_n_s_i; + PyObject *__pyx_n_s_import; + PyObject *__pyx_n_s_infer_read_length; + PyObject *__pyx_n_s_info; + PyObject *__pyx_n_s_info_parse; + PyObject *__pyx_n_s_info_parse_simple; + PyObject *__pyx_n_s_initializing; + PyObject *__pyx_n_s_ins_list; + PyObject *__pyx_n_s_is_coroutine; + PyObject *__pyx_n_s_join; + PyObject *__pyx_n_s_key; + PyObject *__pyx_n_s_line; + PyObject *__pyx_n_s_lines; + PyObject *__pyx_n_s_lines_sort; + PyObject *__pyx_n_s_logging; + PyObject *__pyx_n_s_main; + PyObject *__pyx_n_s_main_dict; + PyObject *__pyx_n_s_makegapdict; + PyObject *__pyx_n_s_mapping_quality; + PyObject *__pyx_n_s_matches; + PyObject *__pyx_n_s_minalign; + PyObject *__pyx_n_s_minlen; + PyObject *__pyx_n_s_mismatch; + PyObject *__pyx_n_s_mm; + PyObject *__pyx_kp_s_mm_2; + PyObject *__pyx_n_s_name; + PyObject *__pyx_n_s_nanovar_nv_bam_parser; + PyObject *__pyx_n_s_ndel; + PyObject *__pyx_n_s_nins; + PyObject *__pyx_n_s_nm; + PyObject *__pyx_n_s_nsegs; + PyObject *__pyx_kp_s_nv_bam_parser_pyx; + PyObject *__pyx_n_s_nv_detect_algo; + PyObject *__pyx_n_s_nv_parser; + PyObject *__pyx_n_s_open; + PyObject *__pyx_n_s_os; + PyObject *__pyx_n_s_out1; + PyObject *__pyx_n_s_out2; + PyObject *__pyx_n_s_ovlt; + PyObject *__pyx_n_s_parse_dict; + PyObject *__pyx_n_s_path; + PyObject *__pyx_n_s_pident; + PyObject *__pyx_n_s_priority; + PyObject *__pyx_n_s_pysam; + PyObject *__pyx_n_s_qlen; + PyObject *__pyx_n_s_qname; + PyObject *__pyx_n_s_qseg; + PyObject *__pyx_n_s_qstart; + PyObject *__pyx_n_s_qstretch; + PyObject *__pyx_n_s_query_alignment_length; + PyObject *__pyx_n_s_query_name; + PyObject *__pyx_n_s_query_sequence; + PyObject *__pyx_n_s_query_sign; + PyObject *__pyx_n_s_r; + PyObject *__pyx_n_s_range; + PyObject *__pyx_n_s_rb; + PyObject *__pyx_n_s_read; + PyObject *__pyx_n_s_readlen; + PyObject *__pyx_n_s_reference_end; + PyObject *__pyx_n_s_reference_name; + PyObject *__pyx_n_s_reference_start; + PyObject *__pyx_n_s_rend; + PyObject *__pyx_n_s_repeat_dict; + PyObject *__pyx_n_s_reverse; + PyObject *__pyx_n_s_rgapdata; + PyObject *__pyx_n_s_rlendict; + PyObject *__pyx_n_s_rname; + PyObject *__pyx_n_s_round; + PyObject *__pyx_n_s_rstart; + PyObject *__pyx_kp_s_s_s_s_s_s; + PyObject *__pyx_kp_s_s_s_s_s_s_s_s_s_s_s_s_s_s_s; + PyObject *__pyx_n_s_sam; + PyObject *__pyx_n_s_save; + PyObject *__pyx_n_s_score; + PyObject *__pyx_n_s_seed; + PyObject *__pyx_n_s_seg; + PyObject *__pyx_n_s_set_verbosity; + PyObject *__pyx_n_s_sig_index; + PyObject *__pyx_n_s_sorted; + PyObject *__pyx_n_s_spec; + PyObject *__pyx_n_s_split; + PyObject *__pyx_n_s_splitlines; + PyObject *__pyx_n_s_splitpct; + PyObject *__pyx_n_s_sseg; + PyObject *__pyx_n_s_start; + PyObject *__pyx_n_s_strand; + PyObject *__pyx_n_s_subdata; + PyObject *__pyx_n_s_subratio; + PyObject *__pyx_n_s_substart; + PyObject *__pyx_n_s_substretch; + PyObject *__pyx_n_s_sum; + PyObject *__pyx_n_s_sup; + PyObject *__pyx_n_s_sv_detect; + PyObject *__pyx_n_s_temp1; + PyObject *__pyx_kp_s_temp1_fa; + PyObject *__pyx_kp_s_temp2_fa; + PyObject *__pyx_n_s_test; + PyObject *__pyx_n_s_total_del; + PyObject *__pyx_n_s_total_gap; + PyObject *__pyx_n_s_total_ins; + PyObject *__pyx_n_s_total_lines; + PyObject *__pyx_n_s_total_mismatch; + PyObject *__pyx_n_s_total_out; + PyObject *__pyx_n_s_total_score; + PyObject *__pyx_n_s_total_subdata; + PyObject *__pyx_n_s_tup; + PyObject *__pyx_n_s_w; + PyObject *__pyx_n_s_wk_dir; + PyObject *__pyx_n_s_write; + PyObject *__pyx_n_s_x; + PyObject *__pyx_n_s_y; + PyObject *__pyx_float_0_0; + PyObject *__pyx_int_0; + PyObject *__pyx_int_1; + PyObject *__pyx_int_2; + PyObject *__pyx_int_3; + PyObject *__pyx_int_4; + PyObject *__pyx_int_5; + PyObject *__pyx_int_6; + PyObject *__pyx_int_16; + PyObject *__pyx_int_20; + PyObject *__pyx_int_30; + PyObject *__pyx_int_40; + PyObject *__pyx_int_100; + PyObject *__pyx_int_200; + PyObject *__pyx_int_256; + PyObject *__pyx_int_272; + PyObject *__pyx_int_2048; + PyObject *__pyx_int_2064; + PyObject *__pyx_tuple_; + PyObject *__pyx_slice__6; + PyObject *__pyx_slice__7; + PyObject *__pyx_tuple__12; + PyObject *__pyx_tuple__14; + PyObject *__pyx_tuple__16; + PyObject *__pyx_tuple__17; + PyObject *__pyx_tuple__19; + PyObject *__pyx_tuple__21; + PyObject *__pyx_tuple__23; + PyObject *__pyx_codeobj__13; + PyObject *__pyx_codeobj__15; + PyObject *__pyx_codeobj__18; + PyObject *__pyx_codeobj__20; + PyObject *__pyx_codeobj__22; + PyObject *__pyx_codeobj__24; +} __pyx_mstate; + +#if CYTHON_USE_MODULE_STATE +#ifdef __cplusplus +namespace { + extern struct PyModuleDef __pyx_moduledef; +} /* anonymous namespace */ +#else +static struct PyModuleDef __pyx_moduledef; +#endif + +#define __pyx_mstate(o) ((__pyx_mstate *)__Pyx_PyModule_GetState(o)) + +#define __pyx_mstate_global (__pyx_mstate(PyState_FindModule(&__pyx_moduledef))) + +#define __pyx_m (PyState_FindModule(&__pyx_moduledef)) +#else +static __pyx_mstate __pyx_mstate_global_static = +#ifdef __cplusplus + {}; +#else + {0}; +#endif +static __pyx_mstate *__pyx_mstate_global = &__pyx_mstate_global_static; +#endif +/* #### Code section: module_state_clear ### */ +#if CYTHON_USE_MODULE_STATE +static int __pyx_m_clear(PyObject *m) { + __pyx_mstate *clear_module_state = __pyx_mstate(m); + if (!clear_module_state) return 0; + Py_CLEAR(clear_module_state->__pyx_d); + Py_CLEAR(clear_module_state->__pyx_b); + Py_CLEAR(clear_module_state->__pyx_cython_runtime); + Py_CLEAR(clear_module_state->__pyx_empty_tuple); + Py_CLEAR(clear_module_state->__pyx_empty_bytes); + Py_CLEAR(clear_module_state->__pyx_empty_unicode); + #ifdef __Pyx_CyFunction_USED + Py_CLEAR(clear_module_state->__pyx_CyFunctionType); + #endif + #ifdef __Pyx_FusedFunction_USED + Py_CLEAR(clear_module_state->__pyx_FusedFunctionType); + #endif + Py_CLEAR(clear_module_state->__pyx_n_s_AS); + Py_CLEAR(clear_module_state->__pyx_n_s_AlignmentFile); + Py_CLEAR(clear_module_state->__pyx_kp_s_Error_Unrecognized_CIGAR_transla); + Py_CLEAR(clear_module_state->__pyx_kp_s_Gap_dictionary_not_loaded); + Py_CLEAR(clear_module_state->__pyx_kp_s_Gap_dictionary_successfully_load); + Py_CLEAR(clear_module_state->__pyx_n_s_KeyError); + Py_CLEAR(clear_module_state->__pyx_n_s_NM); + Py_CLEAR(clear_module_state->__pyx_n_s__10); + Py_CLEAR(clear_module_state->__pyx_kp_u__11); + Py_CLEAR(clear_module_state->__pyx_kp_s__2); + Py_CLEAR(clear_module_state->__pyx_n_s__25); + Py_CLEAR(clear_module_state->__pyx_kp_s__3); + Py_CLEAR(clear_module_state->__pyx_kp_s__4); + Py_CLEAR(clear_module_state->__pyx_kp_s__5); + Py_CLEAR(clear_module_state->__pyx_kp_s__8); + Py_CLEAR(clear_module_state->__pyx_kp_s__9); + Py_CLEAR(clear_module_state->__pyx_n_s_add_sup_seq); + Py_CLEAR(clear_module_state->__pyx_n_s_adv); + Py_CLEAR(clear_module_state->__pyx_n_s_align_priority); + Py_CLEAR(clear_module_state->__pyx_n_s_aln); + Py_CLEAR(clear_module_state->__pyx_n_s_append); + Py_CLEAR(clear_module_state->__pyx_n_s_asyncio_coroutines); + Py_CLEAR(clear_module_state->__pyx_n_s_bam); + Py_CLEAR(clear_module_state->__pyx_n_s_bam_parse); + Py_CLEAR(clear_module_state->__pyx_n_s_bam_parse_locals_lambda); + Py_CLEAR(clear_module_state->__pyx_n_s_basecov); + Py_CLEAR(clear_module_state->__pyx_n_s_beddata); + Py_CLEAR(clear_module_state->__pyx_n_s_breakpoint_parser); + Py_CLEAR(clear_module_state->__pyx_n_s_cigar_tup); + Py_CLEAR(clear_module_state->__pyx_n_s_cigartuples); + Py_CLEAR(clear_module_state->__pyx_n_s_class_getitem); + Py_CLEAR(clear_module_state->__pyx_n_s_cline_in_traceback); + Py_CLEAR(clear_module_state->__pyx_n_s_close); + Py_CLEAR(clear_module_state->__pyx_n_s_contig); + Py_CLEAR(clear_module_state->__pyx_n_s_contig_collect); + Py_CLEAR(clear_module_state->__pyx_n_s_contig_omit); + Py_CLEAR(clear_module_state->__pyx_n_s_contigs); + Py_CLEAR(clear_module_state->__pyx_n_s_critical); + Py_CLEAR(clear_module_state->__pyx_n_s_del_list); + Py_CLEAR(clear_module_state->__pyx_n_s_detect_out); + Py_CLEAR(clear_module_state->__pyx_n_s_end); + Py_CLEAR(clear_module_state->__pyx_n_s_entry); + Py_CLEAR(clear_module_state->__pyx_n_s_entry_parser); + Py_CLEAR(clear_module_state->__pyx_n_s_fail_qual_len); + Py_CLEAR(clear_module_state->__pyx_n_s_fail_qual_seq); + Py_CLEAR(clear_module_state->__pyx_n_s_fasta); + Py_CLEAR(clear_module_state->__pyx_n_s_fasta2); + Py_CLEAR(clear_module_state->__pyx_n_s_filter_file); + Py_CLEAR(clear_module_state->__pyx_n_s_final); + Py_CLEAR(clear_module_state->__pyx_n_s_flag); + Py_CLEAR(clear_module_state->__pyx_n_s_gap_path); + Py_CLEAR(clear_module_state->__pyx_n_s_gapdict); + Py_CLEAR(clear_module_state->__pyx_n_s_gaps); + Py_CLEAR(clear_module_state->__pyx_n_s_get_tag); + Py_CLEAR(clear_module_state->__pyx_n_s_i); + Py_CLEAR(clear_module_state->__pyx_n_s_import); + Py_CLEAR(clear_module_state->__pyx_n_s_infer_read_length); + Py_CLEAR(clear_module_state->__pyx_n_s_info); + Py_CLEAR(clear_module_state->__pyx_n_s_info_parse); + Py_CLEAR(clear_module_state->__pyx_n_s_info_parse_simple); + Py_CLEAR(clear_module_state->__pyx_n_s_initializing); + Py_CLEAR(clear_module_state->__pyx_n_s_ins_list); + Py_CLEAR(clear_module_state->__pyx_n_s_is_coroutine); + Py_CLEAR(clear_module_state->__pyx_n_s_join); + Py_CLEAR(clear_module_state->__pyx_n_s_key); + Py_CLEAR(clear_module_state->__pyx_n_s_line); + Py_CLEAR(clear_module_state->__pyx_n_s_lines); + Py_CLEAR(clear_module_state->__pyx_n_s_lines_sort); + Py_CLEAR(clear_module_state->__pyx_n_s_logging); + Py_CLEAR(clear_module_state->__pyx_n_s_main); + Py_CLEAR(clear_module_state->__pyx_n_s_main_dict); + Py_CLEAR(clear_module_state->__pyx_n_s_makegapdict); + Py_CLEAR(clear_module_state->__pyx_n_s_mapping_quality); + Py_CLEAR(clear_module_state->__pyx_n_s_matches); + Py_CLEAR(clear_module_state->__pyx_n_s_minalign); + Py_CLEAR(clear_module_state->__pyx_n_s_minlen); + Py_CLEAR(clear_module_state->__pyx_n_s_mismatch); + Py_CLEAR(clear_module_state->__pyx_n_s_mm); + Py_CLEAR(clear_module_state->__pyx_kp_s_mm_2); + Py_CLEAR(clear_module_state->__pyx_n_s_name); + Py_CLEAR(clear_module_state->__pyx_n_s_nanovar_nv_bam_parser); + Py_CLEAR(clear_module_state->__pyx_n_s_ndel); + Py_CLEAR(clear_module_state->__pyx_n_s_nins); + Py_CLEAR(clear_module_state->__pyx_n_s_nm); + Py_CLEAR(clear_module_state->__pyx_n_s_nsegs); + Py_CLEAR(clear_module_state->__pyx_kp_s_nv_bam_parser_pyx); + Py_CLEAR(clear_module_state->__pyx_n_s_nv_detect_algo); + Py_CLEAR(clear_module_state->__pyx_n_s_nv_parser); + Py_CLEAR(clear_module_state->__pyx_n_s_open); + Py_CLEAR(clear_module_state->__pyx_n_s_os); + Py_CLEAR(clear_module_state->__pyx_n_s_out1); + Py_CLEAR(clear_module_state->__pyx_n_s_out2); + Py_CLEAR(clear_module_state->__pyx_n_s_ovlt); + Py_CLEAR(clear_module_state->__pyx_n_s_parse_dict); + Py_CLEAR(clear_module_state->__pyx_n_s_path); + Py_CLEAR(clear_module_state->__pyx_n_s_pident); + Py_CLEAR(clear_module_state->__pyx_n_s_priority); + Py_CLEAR(clear_module_state->__pyx_n_s_pysam); + Py_CLEAR(clear_module_state->__pyx_n_s_qlen); + Py_CLEAR(clear_module_state->__pyx_n_s_qname); + Py_CLEAR(clear_module_state->__pyx_n_s_qseg); + Py_CLEAR(clear_module_state->__pyx_n_s_qstart); + Py_CLEAR(clear_module_state->__pyx_n_s_qstretch); + Py_CLEAR(clear_module_state->__pyx_n_s_query_alignment_length); + Py_CLEAR(clear_module_state->__pyx_n_s_query_name); + Py_CLEAR(clear_module_state->__pyx_n_s_query_sequence); + Py_CLEAR(clear_module_state->__pyx_n_s_query_sign); + Py_CLEAR(clear_module_state->__pyx_n_s_r); + Py_CLEAR(clear_module_state->__pyx_n_s_range); + Py_CLEAR(clear_module_state->__pyx_n_s_rb); + Py_CLEAR(clear_module_state->__pyx_n_s_read); + Py_CLEAR(clear_module_state->__pyx_n_s_readlen); + Py_CLEAR(clear_module_state->__pyx_n_s_reference_end); + Py_CLEAR(clear_module_state->__pyx_n_s_reference_name); + Py_CLEAR(clear_module_state->__pyx_n_s_reference_start); + Py_CLEAR(clear_module_state->__pyx_n_s_rend); + Py_CLEAR(clear_module_state->__pyx_n_s_repeat_dict); + Py_CLEAR(clear_module_state->__pyx_n_s_reverse); + Py_CLEAR(clear_module_state->__pyx_n_s_rgapdata); + Py_CLEAR(clear_module_state->__pyx_n_s_rlendict); + Py_CLEAR(clear_module_state->__pyx_n_s_rname); + Py_CLEAR(clear_module_state->__pyx_n_s_round); + Py_CLEAR(clear_module_state->__pyx_n_s_rstart); + Py_CLEAR(clear_module_state->__pyx_kp_s_s_s_s_s_s); + Py_CLEAR(clear_module_state->__pyx_kp_s_s_s_s_s_s_s_s_s_s_s_s_s_s_s); + Py_CLEAR(clear_module_state->__pyx_n_s_sam); + Py_CLEAR(clear_module_state->__pyx_n_s_save); + Py_CLEAR(clear_module_state->__pyx_n_s_score); + Py_CLEAR(clear_module_state->__pyx_n_s_seed); + Py_CLEAR(clear_module_state->__pyx_n_s_seg); + Py_CLEAR(clear_module_state->__pyx_n_s_set_verbosity); + Py_CLEAR(clear_module_state->__pyx_n_s_sig_index); + Py_CLEAR(clear_module_state->__pyx_n_s_sorted); + Py_CLEAR(clear_module_state->__pyx_n_s_spec); + Py_CLEAR(clear_module_state->__pyx_n_s_split); + Py_CLEAR(clear_module_state->__pyx_n_s_splitlines); + Py_CLEAR(clear_module_state->__pyx_n_s_splitpct); + Py_CLEAR(clear_module_state->__pyx_n_s_sseg); + Py_CLEAR(clear_module_state->__pyx_n_s_start); + Py_CLEAR(clear_module_state->__pyx_n_s_strand); + Py_CLEAR(clear_module_state->__pyx_n_s_subdata); + Py_CLEAR(clear_module_state->__pyx_n_s_subratio); + Py_CLEAR(clear_module_state->__pyx_n_s_substart); + Py_CLEAR(clear_module_state->__pyx_n_s_substretch); + Py_CLEAR(clear_module_state->__pyx_n_s_sum); + Py_CLEAR(clear_module_state->__pyx_n_s_sup); + Py_CLEAR(clear_module_state->__pyx_n_s_sv_detect); + Py_CLEAR(clear_module_state->__pyx_n_s_temp1); + Py_CLEAR(clear_module_state->__pyx_kp_s_temp1_fa); + Py_CLEAR(clear_module_state->__pyx_kp_s_temp2_fa); + Py_CLEAR(clear_module_state->__pyx_n_s_test); + Py_CLEAR(clear_module_state->__pyx_n_s_total_del); + Py_CLEAR(clear_module_state->__pyx_n_s_total_gap); + Py_CLEAR(clear_module_state->__pyx_n_s_total_ins); + Py_CLEAR(clear_module_state->__pyx_n_s_total_lines); + Py_CLEAR(clear_module_state->__pyx_n_s_total_mismatch); + Py_CLEAR(clear_module_state->__pyx_n_s_total_out); + Py_CLEAR(clear_module_state->__pyx_n_s_total_score); + Py_CLEAR(clear_module_state->__pyx_n_s_total_subdata); + Py_CLEAR(clear_module_state->__pyx_n_s_tup); + Py_CLEAR(clear_module_state->__pyx_n_s_w); + Py_CLEAR(clear_module_state->__pyx_n_s_wk_dir); + Py_CLEAR(clear_module_state->__pyx_n_s_write); + Py_CLEAR(clear_module_state->__pyx_n_s_x); + Py_CLEAR(clear_module_state->__pyx_n_s_y); + Py_CLEAR(clear_module_state->__pyx_float_0_0); + Py_CLEAR(clear_module_state->__pyx_int_0); + Py_CLEAR(clear_module_state->__pyx_int_1); + Py_CLEAR(clear_module_state->__pyx_int_2); + Py_CLEAR(clear_module_state->__pyx_int_3); + Py_CLEAR(clear_module_state->__pyx_int_4); + Py_CLEAR(clear_module_state->__pyx_int_5); + Py_CLEAR(clear_module_state->__pyx_int_6); + Py_CLEAR(clear_module_state->__pyx_int_16); + Py_CLEAR(clear_module_state->__pyx_int_20); + Py_CLEAR(clear_module_state->__pyx_int_30); + Py_CLEAR(clear_module_state->__pyx_int_40); + Py_CLEAR(clear_module_state->__pyx_int_100); + Py_CLEAR(clear_module_state->__pyx_int_200); + Py_CLEAR(clear_module_state->__pyx_int_256); + Py_CLEAR(clear_module_state->__pyx_int_272); + Py_CLEAR(clear_module_state->__pyx_int_2048); + Py_CLEAR(clear_module_state->__pyx_int_2064); + Py_CLEAR(clear_module_state->__pyx_tuple_); + Py_CLEAR(clear_module_state->__pyx_slice__6); + Py_CLEAR(clear_module_state->__pyx_slice__7); + Py_CLEAR(clear_module_state->__pyx_tuple__12); + Py_CLEAR(clear_module_state->__pyx_tuple__14); + Py_CLEAR(clear_module_state->__pyx_tuple__16); + Py_CLEAR(clear_module_state->__pyx_tuple__17); + Py_CLEAR(clear_module_state->__pyx_tuple__19); + Py_CLEAR(clear_module_state->__pyx_tuple__21); + Py_CLEAR(clear_module_state->__pyx_tuple__23); + Py_CLEAR(clear_module_state->__pyx_codeobj__13); + Py_CLEAR(clear_module_state->__pyx_codeobj__15); + Py_CLEAR(clear_module_state->__pyx_codeobj__18); + Py_CLEAR(clear_module_state->__pyx_codeobj__20); + Py_CLEAR(clear_module_state->__pyx_codeobj__22); + Py_CLEAR(clear_module_state->__pyx_codeobj__24); + return 0; +} +#endif +/* #### Code section: module_state_traverse ### */ +#if CYTHON_USE_MODULE_STATE +static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) { + __pyx_mstate *traverse_module_state = __pyx_mstate(m); + if (!traverse_module_state) return 0; + Py_VISIT(traverse_module_state->__pyx_d); + Py_VISIT(traverse_module_state->__pyx_b); + Py_VISIT(traverse_module_state->__pyx_cython_runtime); + Py_VISIT(traverse_module_state->__pyx_empty_tuple); + Py_VISIT(traverse_module_state->__pyx_empty_bytes); + Py_VISIT(traverse_module_state->__pyx_empty_unicode); + #ifdef __Pyx_CyFunction_USED + Py_VISIT(traverse_module_state->__pyx_CyFunctionType); + #endif + #ifdef __Pyx_FusedFunction_USED + Py_VISIT(traverse_module_state->__pyx_FusedFunctionType); + #endif + Py_VISIT(traverse_module_state->__pyx_n_s_AS); + Py_VISIT(traverse_module_state->__pyx_n_s_AlignmentFile); + Py_VISIT(traverse_module_state->__pyx_kp_s_Error_Unrecognized_CIGAR_transla); + Py_VISIT(traverse_module_state->__pyx_kp_s_Gap_dictionary_not_loaded); + Py_VISIT(traverse_module_state->__pyx_kp_s_Gap_dictionary_successfully_load); + Py_VISIT(traverse_module_state->__pyx_n_s_KeyError); + Py_VISIT(traverse_module_state->__pyx_n_s_NM); + Py_VISIT(traverse_module_state->__pyx_n_s__10); + Py_VISIT(traverse_module_state->__pyx_kp_u__11); + Py_VISIT(traverse_module_state->__pyx_kp_s__2); + Py_VISIT(traverse_module_state->__pyx_n_s__25); + Py_VISIT(traverse_module_state->__pyx_kp_s__3); + Py_VISIT(traverse_module_state->__pyx_kp_s__4); + Py_VISIT(traverse_module_state->__pyx_kp_s__5); + Py_VISIT(traverse_module_state->__pyx_kp_s__8); + Py_VISIT(traverse_module_state->__pyx_kp_s__9); + Py_VISIT(traverse_module_state->__pyx_n_s_add_sup_seq); + Py_VISIT(traverse_module_state->__pyx_n_s_adv); + Py_VISIT(traverse_module_state->__pyx_n_s_align_priority); + Py_VISIT(traverse_module_state->__pyx_n_s_aln); + Py_VISIT(traverse_module_state->__pyx_n_s_append); + Py_VISIT(traverse_module_state->__pyx_n_s_asyncio_coroutines); + Py_VISIT(traverse_module_state->__pyx_n_s_bam); + Py_VISIT(traverse_module_state->__pyx_n_s_bam_parse); + Py_VISIT(traverse_module_state->__pyx_n_s_bam_parse_locals_lambda); + Py_VISIT(traverse_module_state->__pyx_n_s_basecov); + Py_VISIT(traverse_module_state->__pyx_n_s_beddata); + Py_VISIT(traverse_module_state->__pyx_n_s_breakpoint_parser); + Py_VISIT(traverse_module_state->__pyx_n_s_cigar_tup); + Py_VISIT(traverse_module_state->__pyx_n_s_cigartuples); + Py_VISIT(traverse_module_state->__pyx_n_s_class_getitem); + Py_VISIT(traverse_module_state->__pyx_n_s_cline_in_traceback); + Py_VISIT(traverse_module_state->__pyx_n_s_close); + Py_VISIT(traverse_module_state->__pyx_n_s_contig); + Py_VISIT(traverse_module_state->__pyx_n_s_contig_collect); + Py_VISIT(traverse_module_state->__pyx_n_s_contig_omit); + Py_VISIT(traverse_module_state->__pyx_n_s_contigs); + Py_VISIT(traverse_module_state->__pyx_n_s_critical); + Py_VISIT(traverse_module_state->__pyx_n_s_del_list); + Py_VISIT(traverse_module_state->__pyx_n_s_detect_out); + Py_VISIT(traverse_module_state->__pyx_n_s_end); + Py_VISIT(traverse_module_state->__pyx_n_s_entry); + Py_VISIT(traverse_module_state->__pyx_n_s_entry_parser); + Py_VISIT(traverse_module_state->__pyx_n_s_fail_qual_len); + Py_VISIT(traverse_module_state->__pyx_n_s_fail_qual_seq); + Py_VISIT(traverse_module_state->__pyx_n_s_fasta); + Py_VISIT(traverse_module_state->__pyx_n_s_fasta2); + Py_VISIT(traverse_module_state->__pyx_n_s_filter_file); + Py_VISIT(traverse_module_state->__pyx_n_s_final); + Py_VISIT(traverse_module_state->__pyx_n_s_flag); + Py_VISIT(traverse_module_state->__pyx_n_s_gap_path); + Py_VISIT(traverse_module_state->__pyx_n_s_gapdict); + Py_VISIT(traverse_module_state->__pyx_n_s_gaps); + Py_VISIT(traverse_module_state->__pyx_n_s_get_tag); + Py_VISIT(traverse_module_state->__pyx_n_s_i); + Py_VISIT(traverse_module_state->__pyx_n_s_import); + Py_VISIT(traverse_module_state->__pyx_n_s_infer_read_length); + Py_VISIT(traverse_module_state->__pyx_n_s_info); + Py_VISIT(traverse_module_state->__pyx_n_s_info_parse); + Py_VISIT(traverse_module_state->__pyx_n_s_info_parse_simple); + Py_VISIT(traverse_module_state->__pyx_n_s_initializing); + Py_VISIT(traverse_module_state->__pyx_n_s_ins_list); + Py_VISIT(traverse_module_state->__pyx_n_s_is_coroutine); + Py_VISIT(traverse_module_state->__pyx_n_s_join); + Py_VISIT(traverse_module_state->__pyx_n_s_key); + Py_VISIT(traverse_module_state->__pyx_n_s_line); + Py_VISIT(traverse_module_state->__pyx_n_s_lines); + Py_VISIT(traverse_module_state->__pyx_n_s_lines_sort); + Py_VISIT(traverse_module_state->__pyx_n_s_logging); + Py_VISIT(traverse_module_state->__pyx_n_s_main); + Py_VISIT(traverse_module_state->__pyx_n_s_main_dict); + Py_VISIT(traverse_module_state->__pyx_n_s_makegapdict); + Py_VISIT(traverse_module_state->__pyx_n_s_mapping_quality); + Py_VISIT(traverse_module_state->__pyx_n_s_matches); + Py_VISIT(traverse_module_state->__pyx_n_s_minalign); + Py_VISIT(traverse_module_state->__pyx_n_s_minlen); + Py_VISIT(traverse_module_state->__pyx_n_s_mismatch); + Py_VISIT(traverse_module_state->__pyx_n_s_mm); + Py_VISIT(traverse_module_state->__pyx_kp_s_mm_2); + Py_VISIT(traverse_module_state->__pyx_n_s_name); + Py_VISIT(traverse_module_state->__pyx_n_s_nanovar_nv_bam_parser); + Py_VISIT(traverse_module_state->__pyx_n_s_ndel); + Py_VISIT(traverse_module_state->__pyx_n_s_nins); + Py_VISIT(traverse_module_state->__pyx_n_s_nm); + Py_VISIT(traverse_module_state->__pyx_n_s_nsegs); + Py_VISIT(traverse_module_state->__pyx_kp_s_nv_bam_parser_pyx); + Py_VISIT(traverse_module_state->__pyx_n_s_nv_detect_algo); + Py_VISIT(traverse_module_state->__pyx_n_s_nv_parser); + Py_VISIT(traverse_module_state->__pyx_n_s_open); + Py_VISIT(traverse_module_state->__pyx_n_s_os); + Py_VISIT(traverse_module_state->__pyx_n_s_out1); + Py_VISIT(traverse_module_state->__pyx_n_s_out2); + Py_VISIT(traverse_module_state->__pyx_n_s_ovlt); + Py_VISIT(traverse_module_state->__pyx_n_s_parse_dict); + Py_VISIT(traverse_module_state->__pyx_n_s_path); + Py_VISIT(traverse_module_state->__pyx_n_s_pident); + Py_VISIT(traverse_module_state->__pyx_n_s_priority); + Py_VISIT(traverse_module_state->__pyx_n_s_pysam); + Py_VISIT(traverse_module_state->__pyx_n_s_qlen); + Py_VISIT(traverse_module_state->__pyx_n_s_qname); + Py_VISIT(traverse_module_state->__pyx_n_s_qseg); + Py_VISIT(traverse_module_state->__pyx_n_s_qstart); + Py_VISIT(traverse_module_state->__pyx_n_s_qstretch); + Py_VISIT(traverse_module_state->__pyx_n_s_query_alignment_length); + Py_VISIT(traverse_module_state->__pyx_n_s_query_name); + Py_VISIT(traverse_module_state->__pyx_n_s_query_sequence); + Py_VISIT(traverse_module_state->__pyx_n_s_query_sign); + Py_VISIT(traverse_module_state->__pyx_n_s_r); + Py_VISIT(traverse_module_state->__pyx_n_s_range); + Py_VISIT(traverse_module_state->__pyx_n_s_rb); + Py_VISIT(traverse_module_state->__pyx_n_s_read); + Py_VISIT(traverse_module_state->__pyx_n_s_readlen); + Py_VISIT(traverse_module_state->__pyx_n_s_reference_end); + Py_VISIT(traverse_module_state->__pyx_n_s_reference_name); + Py_VISIT(traverse_module_state->__pyx_n_s_reference_start); + Py_VISIT(traverse_module_state->__pyx_n_s_rend); + Py_VISIT(traverse_module_state->__pyx_n_s_repeat_dict); + Py_VISIT(traverse_module_state->__pyx_n_s_reverse); + Py_VISIT(traverse_module_state->__pyx_n_s_rgapdata); + Py_VISIT(traverse_module_state->__pyx_n_s_rlendict); + Py_VISIT(traverse_module_state->__pyx_n_s_rname); + Py_VISIT(traverse_module_state->__pyx_n_s_round); + Py_VISIT(traverse_module_state->__pyx_n_s_rstart); + Py_VISIT(traverse_module_state->__pyx_kp_s_s_s_s_s_s); + Py_VISIT(traverse_module_state->__pyx_kp_s_s_s_s_s_s_s_s_s_s_s_s_s_s_s); + Py_VISIT(traverse_module_state->__pyx_n_s_sam); + Py_VISIT(traverse_module_state->__pyx_n_s_save); + Py_VISIT(traverse_module_state->__pyx_n_s_score); + Py_VISIT(traverse_module_state->__pyx_n_s_seed); + Py_VISIT(traverse_module_state->__pyx_n_s_seg); + Py_VISIT(traverse_module_state->__pyx_n_s_set_verbosity); + Py_VISIT(traverse_module_state->__pyx_n_s_sig_index); + Py_VISIT(traverse_module_state->__pyx_n_s_sorted); + Py_VISIT(traverse_module_state->__pyx_n_s_spec); + Py_VISIT(traverse_module_state->__pyx_n_s_split); + Py_VISIT(traverse_module_state->__pyx_n_s_splitlines); + Py_VISIT(traverse_module_state->__pyx_n_s_splitpct); + Py_VISIT(traverse_module_state->__pyx_n_s_sseg); + Py_VISIT(traverse_module_state->__pyx_n_s_start); + Py_VISIT(traverse_module_state->__pyx_n_s_strand); + Py_VISIT(traverse_module_state->__pyx_n_s_subdata); + Py_VISIT(traverse_module_state->__pyx_n_s_subratio); + Py_VISIT(traverse_module_state->__pyx_n_s_substart); + Py_VISIT(traverse_module_state->__pyx_n_s_substretch); + Py_VISIT(traverse_module_state->__pyx_n_s_sum); + Py_VISIT(traverse_module_state->__pyx_n_s_sup); + Py_VISIT(traverse_module_state->__pyx_n_s_sv_detect); + Py_VISIT(traverse_module_state->__pyx_n_s_temp1); + Py_VISIT(traverse_module_state->__pyx_kp_s_temp1_fa); + Py_VISIT(traverse_module_state->__pyx_kp_s_temp2_fa); + Py_VISIT(traverse_module_state->__pyx_n_s_test); + Py_VISIT(traverse_module_state->__pyx_n_s_total_del); + Py_VISIT(traverse_module_state->__pyx_n_s_total_gap); + Py_VISIT(traverse_module_state->__pyx_n_s_total_ins); + Py_VISIT(traverse_module_state->__pyx_n_s_total_lines); + Py_VISIT(traverse_module_state->__pyx_n_s_total_mismatch); + Py_VISIT(traverse_module_state->__pyx_n_s_total_out); + Py_VISIT(traverse_module_state->__pyx_n_s_total_score); + Py_VISIT(traverse_module_state->__pyx_n_s_total_subdata); + Py_VISIT(traverse_module_state->__pyx_n_s_tup); + Py_VISIT(traverse_module_state->__pyx_n_s_w); + Py_VISIT(traverse_module_state->__pyx_n_s_wk_dir); + Py_VISIT(traverse_module_state->__pyx_n_s_write); + Py_VISIT(traverse_module_state->__pyx_n_s_x); + Py_VISIT(traverse_module_state->__pyx_n_s_y); + Py_VISIT(traverse_module_state->__pyx_float_0_0); + Py_VISIT(traverse_module_state->__pyx_int_0); + Py_VISIT(traverse_module_state->__pyx_int_1); + Py_VISIT(traverse_module_state->__pyx_int_2); + Py_VISIT(traverse_module_state->__pyx_int_3); + Py_VISIT(traverse_module_state->__pyx_int_4); + Py_VISIT(traverse_module_state->__pyx_int_5); + Py_VISIT(traverse_module_state->__pyx_int_6); + Py_VISIT(traverse_module_state->__pyx_int_16); + Py_VISIT(traverse_module_state->__pyx_int_20); + Py_VISIT(traverse_module_state->__pyx_int_30); + Py_VISIT(traverse_module_state->__pyx_int_40); + Py_VISIT(traverse_module_state->__pyx_int_100); + Py_VISIT(traverse_module_state->__pyx_int_200); + Py_VISIT(traverse_module_state->__pyx_int_256); + Py_VISIT(traverse_module_state->__pyx_int_272); + Py_VISIT(traverse_module_state->__pyx_int_2048); + Py_VISIT(traverse_module_state->__pyx_int_2064); + Py_VISIT(traverse_module_state->__pyx_tuple_); + Py_VISIT(traverse_module_state->__pyx_slice__6); + Py_VISIT(traverse_module_state->__pyx_slice__7); + Py_VISIT(traverse_module_state->__pyx_tuple__12); + Py_VISIT(traverse_module_state->__pyx_tuple__14); + Py_VISIT(traverse_module_state->__pyx_tuple__16); + Py_VISIT(traverse_module_state->__pyx_tuple__17); + Py_VISIT(traverse_module_state->__pyx_tuple__19); + Py_VISIT(traverse_module_state->__pyx_tuple__21); + Py_VISIT(traverse_module_state->__pyx_tuple__23); + Py_VISIT(traverse_module_state->__pyx_codeobj__13); + Py_VISIT(traverse_module_state->__pyx_codeobj__15); + Py_VISIT(traverse_module_state->__pyx_codeobj__18); + Py_VISIT(traverse_module_state->__pyx_codeobj__20); + Py_VISIT(traverse_module_state->__pyx_codeobj__22); + Py_VISIT(traverse_module_state->__pyx_codeobj__24); + return 0; +} +#endif +/* #### Code section: module_state_defines ### */ +#define __pyx_d __pyx_mstate_global->__pyx_d +#define __pyx_b __pyx_mstate_global->__pyx_b +#define __pyx_cython_runtime __pyx_mstate_global->__pyx_cython_runtime +#define __pyx_empty_tuple __pyx_mstate_global->__pyx_empty_tuple +#define __pyx_empty_bytes __pyx_mstate_global->__pyx_empty_bytes +#define __pyx_empty_unicode __pyx_mstate_global->__pyx_empty_unicode +#ifdef __Pyx_CyFunction_USED +#define __pyx_CyFunctionType __pyx_mstate_global->__pyx_CyFunctionType +#endif +#ifdef __Pyx_FusedFunction_USED +#define __pyx_FusedFunctionType __pyx_mstate_global->__pyx_FusedFunctionType +#endif +#ifdef __Pyx_Generator_USED +#define __pyx_GeneratorType __pyx_mstate_global->__pyx_GeneratorType +#endif +#ifdef __Pyx_IterableCoroutine_USED +#define __pyx_IterableCoroutineType __pyx_mstate_global->__pyx_IterableCoroutineType +#endif +#ifdef __Pyx_Coroutine_USED +#define __pyx_CoroutineAwaitType __pyx_mstate_global->__pyx_CoroutineAwaitType +#endif +#ifdef __Pyx_Coroutine_USED +#define __pyx_CoroutineType __pyx_mstate_global->__pyx_CoroutineType +#endif +#if CYTHON_USE_MODULE_STATE +#endif +#define __pyx_n_s_AS __pyx_mstate_global->__pyx_n_s_AS +#define __pyx_n_s_AlignmentFile __pyx_mstate_global->__pyx_n_s_AlignmentFile +#define __pyx_kp_s_Error_Unrecognized_CIGAR_transla __pyx_mstate_global->__pyx_kp_s_Error_Unrecognized_CIGAR_transla +#define __pyx_kp_s_Gap_dictionary_not_loaded __pyx_mstate_global->__pyx_kp_s_Gap_dictionary_not_loaded +#define __pyx_kp_s_Gap_dictionary_successfully_load __pyx_mstate_global->__pyx_kp_s_Gap_dictionary_successfully_load +#define __pyx_n_s_KeyError __pyx_mstate_global->__pyx_n_s_KeyError +#define __pyx_n_s_NM __pyx_mstate_global->__pyx_n_s_NM +#define __pyx_n_s__10 __pyx_mstate_global->__pyx_n_s__10 +#define __pyx_kp_u__11 __pyx_mstate_global->__pyx_kp_u__11 +#define __pyx_kp_s__2 __pyx_mstate_global->__pyx_kp_s__2 +#define __pyx_n_s__25 __pyx_mstate_global->__pyx_n_s__25 +#define __pyx_kp_s__3 __pyx_mstate_global->__pyx_kp_s__3 +#define __pyx_kp_s__4 __pyx_mstate_global->__pyx_kp_s__4 +#define __pyx_kp_s__5 __pyx_mstate_global->__pyx_kp_s__5 +#define __pyx_kp_s__8 __pyx_mstate_global->__pyx_kp_s__8 +#define __pyx_kp_s__9 __pyx_mstate_global->__pyx_kp_s__9 +#define __pyx_n_s_add_sup_seq __pyx_mstate_global->__pyx_n_s_add_sup_seq +#define __pyx_n_s_adv __pyx_mstate_global->__pyx_n_s_adv +#define __pyx_n_s_align_priority __pyx_mstate_global->__pyx_n_s_align_priority +#define __pyx_n_s_aln __pyx_mstate_global->__pyx_n_s_aln +#define __pyx_n_s_append __pyx_mstate_global->__pyx_n_s_append +#define __pyx_n_s_asyncio_coroutines __pyx_mstate_global->__pyx_n_s_asyncio_coroutines +#define __pyx_n_s_bam __pyx_mstate_global->__pyx_n_s_bam +#define __pyx_n_s_bam_parse __pyx_mstate_global->__pyx_n_s_bam_parse +#define __pyx_n_s_bam_parse_locals_lambda __pyx_mstate_global->__pyx_n_s_bam_parse_locals_lambda +#define __pyx_n_s_basecov __pyx_mstate_global->__pyx_n_s_basecov +#define __pyx_n_s_beddata __pyx_mstate_global->__pyx_n_s_beddata +#define __pyx_n_s_breakpoint_parser __pyx_mstate_global->__pyx_n_s_breakpoint_parser +#define __pyx_n_s_cigar_tup __pyx_mstate_global->__pyx_n_s_cigar_tup +#define __pyx_n_s_cigartuples __pyx_mstate_global->__pyx_n_s_cigartuples +#define __pyx_n_s_class_getitem __pyx_mstate_global->__pyx_n_s_class_getitem +#define __pyx_n_s_cline_in_traceback __pyx_mstate_global->__pyx_n_s_cline_in_traceback +#define __pyx_n_s_close __pyx_mstate_global->__pyx_n_s_close +#define __pyx_n_s_contig __pyx_mstate_global->__pyx_n_s_contig +#define __pyx_n_s_contig_collect __pyx_mstate_global->__pyx_n_s_contig_collect +#define __pyx_n_s_contig_omit __pyx_mstate_global->__pyx_n_s_contig_omit +#define __pyx_n_s_contigs __pyx_mstate_global->__pyx_n_s_contigs +#define __pyx_n_s_critical __pyx_mstate_global->__pyx_n_s_critical +#define __pyx_n_s_del_list __pyx_mstate_global->__pyx_n_s_del_list +#define __pyx_n_s_detect_out __pyx_mstate_global->__pyx_n_s_detect_out +#define __pyx_n_s_end __pyx_mstate_global->__pyx_n_s_end +#define __pyx_n_s_entry __pyx_mstate_global->__pyx_n_s_entry +#define __pyx_n_s_entry_parser __pyx_mstate_global->__pyx_n_s_entry_parser +#define __pyx_n_s_fail_qual_len __pyx_mstate_global->__pyx_n_s_fail_qual_len +#define __pyx_n_s_fail_qual_seq __pyx_mstate_global->__pyx_n_s_fail_qual_seq +#define __pyx_n_s_fasta __pyx_mstate_global->__pyx_n_s_fasta +#define __pyx_n_s_fasta2 __pyx_mstate_global->__pyx_n_s_fasta2 +#define __pyx_n_s_filter_file __pyx_mstate_global->__pyx_n_s_filter_file +#define __pyx_n_s_final __pyx_mstate_global->__pyx_n_s_final +#define __pyx_n_s_flag __pyx_mstate_global->__pyx_n_s_flag +#define __pyx_n_s_gap_path __pyx_mstate_global->__pyx_n_s_gap_path +#define __pyx_n_s_gapdict __pyx_mstate_global->__pyx_n_s_gapdict +#define __pyx_n_s_gaps __pyx_mstate_global->__pyx_n_s_gaps +#define __pyx_n_s_get_tag __pyx_mstate_global->__pyx_n_s_get_tag +#define __pyx_n_s_i __pyx_mstate_global->__pyx_n_s_i +#define __pyx_n_s_import __pyx_mstate_global->__pyx_n_s_import +#define __pyx_n_s_infer_read_length __pyx_mstate_global->__pyx_n_s_infer_read_length +#define __pyx_n_s_info __pyx_mstate_global->__pyx_n_s_info +#define __pyx_n_s_info_parse __pyx_mstate_global->__pyx_n_s_info_parse +#define __pyx_n_s_info_parse_simple __pyx_mstate_global->__pyx_n_s_info_parse_simple +#define __pyx_n_s_initializing __pyx_mstate_global->__pyx_n_s_initializing +#define __pyx_n_s_ins_list __pyx_mstate_global->__pyx_n_s_ins_list +#define __pyx_n_s_is_coroutine __pyx_mstate_global->__pyx_n_s_is_coroutine +#define __pyx_n_s_join __pyx_mstate_global->__pyx_n_s_join +#define __pyx_n_s_key __pyx_mstate_global->__pyx_n_s_key +#define __pyx_n_s_line __pyx_mstate_global->__pyx_n_s_line +#define __pyx_n_s_lines __pyx_mstate_global->__pyx_n_s_lines +#define __pyx_n_s_lines_sort __pyx_mstate_global->__pyx_n_s_lines_sort +#define __pyx_n_s_logging __pyx_mstate_global->__pyx_n_s_logging +#define __pyx_n_s_main __pyx_mstate_global->__pyx_n_s_main +#define __pyx_n_s_main_dict __pyx_mstate_global->__pyx_n_s_main_dict +#define __pyx_n_s_makegapdict __pyx_mstate_global->__pyx_n_s_makegapdict +#define __pyx_n_s_mapping_quality __pyx_mstate_global->__pyx_n_s_mapping_quality +#define __pyx_n_s_matches __pyx_mstate_global->__pyx_n_s_matches +#define __pyx_n_s_minalign __pyx_mstate_global->__pyx_n_s_minalign +#define __pyx_n_s_minlen __pyx_mstate_global->__pyx_n_s_minlen +#define __pyx_n_s_mismatch __pyx_mstate_global->__pyx_n_s_mismatch +#define __pyx_n_s_mm __pyx_mstate_global->__pyx_n_s_mm +#define __pyx_kp_s_mm_2 __pyx_mstate_global->__pyx_kp_s_mm_2 +#define __pyx_n_s_name __pyx_mstate_global->__pyx_n_s_name +#define __pyx_n_s_nanovar_nv_bam_parser __pyx_mstate_global->__pyx_n_s_nanovar_nv_bam_parser +#define __pyx_n_s_ndel __pyx_mstate_global->__pyx_n_s_ndel +#define __pyx_n_s_nins __pyx_mstate_global->__pyx_n_s_nins +#define __pyx_n_s_nm __pyx_mstate_global->__pyx_n_s_nm +#define __pyx_n_s_nsegs __pyx_mstate_global->__pyx_n_s_nsegs +#define __pyx_kp_s_nv_bam_parser_pyx __pyx_mstate_global->__pyx_kp_s_nv_bam_parser_pyx +#define __pyx_n_s_nv_detect_algo __pyx_mstate_global->__pyx_n_s_nv_detect_algo +#define __pyx_n_s_nv_parser __pyx_mstate_global->__pyx_n_s_nv_parser +#define __pyx_n_s_open __pyx_mstate_global->__pyx_n_s_open +#define __pyx_n_s_os __pyx_mstate_global->__pyx_n_s_os +#define __pyx_n_s_out1 __pyx_mstate_global->__pyx_n_s_out1 +#define __pyx_n_s_out2 __pyx_mstate_global->__pyx_n_s_out2 +#define __pyx_n_s_ovlt __pyx_mstate_global->__pyx_n_s_ovlt +#define __pyx_n_s_parse_dict __pyx_mstate_global->__pyx_n_s_parse_dict +#define __pyx_n_s_path __pyx_mstate_global->__pyx_n_s_path +#define __pyx_n_s_pident __pyx_mstate_global->__pyx_n_s_pident +#define __pyx_n_s_priority __pyx_mstate_global->__pyx_n_s_priority +#define __pyx_n_s_pysam __pyx_mstate_global->__pyx_n_s_pysam +#define __pyx_n_s_qlen __pyx_mstate_global->__pyx_n_s_qlen +#define __pyx_n_s_qname __pyx_mstate_global->__pyx_n_s_qname +#define __pyx_n_s_qseg __pyx_mstate_global->__pyx_n_s_qseg +#define __pyx_n_s_qstart __pyx_mstate_global->__pyx_n_s_qstart +#define __pyx_n_s_qstretch __pyx_mstate_global->__pyx_n_s_qstretch +#define __pyx_n_s_query_alignment_length __pyx_mstate_global->__pyx_n_s_query_alignment_length +#define __pyx_n_s_query_name __pyx_mstate_global->__pyx_n_s_query_name +#define __pyx_n_s_query_sequence __pyx_mstate_global->__pyx_n_s_query_sequence +#define __pyx_n_s_query_sign __pyx_mstate_global->__pyx_n_s_query_sign +#define __pyx_n_s_r __pyx_mstate_global->__pyx_n_s_r +#define __pyx_n_s_range __pyx_mstate_global->__pyx_n_s_range +#define __pyx_n_s_rb __pyx_mstate_global->__pyx_n_s_rb +#define __pyx_n_s_read __pyx_mstate_global->__pyx_n_s_read +#define __pyx_n_s_readlen __pyx_mstate_global->__pyx_n_s_readlen +#define __pyx_n_s_reference_end __pyx_mstate_global->__pyx_n_s_reference_end +#define __pyx_n_s_reference_name __pyx_mstate_global->__pyx_n_s_reference_name +#define __pyx_n_s_reference_start __pyx_mstate_global->__pyx_n_s_reference_start +#define __pyx_n_s_rend __pyx_mstate_global->__pyx_n_s_rend +#define __pyx_n_s_repeat_dict __pyx_mstate_global->__pyx_n_s_repeat_dict +#define __pyx_n_s_reverse __pyx_mstate_global->__pyx_n_s_reverse +#define __pyx_n_s_rgapdata __pyx_mstate_global->__pyx_n_s_rgapdata +#define __pyx_n_s_rlendict __pyx_mstate_global->__pyx_n_s_rlendict +#define __pyx_n_s_rname __pyx_mstate_global->__pyx_n_s_rname +#define __pyx_n_s_round __pyx_mstate_global->__pyx_n_s_round +#define __pyx_n_s_rstart __pyx_mstate_global->__pyx_n_s_rstart +#define __pyx_kp_s_s_s_s_s_s __pyx_mstate_global->__pyx_kp_s_s_s_s_s_s +#define __pyx_kp_s_s_s_s_s_s_s_s_s_s_s_s_s_s_s __pyx_mstate_global->__pyx_kp_s_s_s_s_s_s_s_s_s_s_s_s_s_s_s +#define __pyx_n_s_sam __pyx_mstate_global->__pyx_n_s_sam +#define __pyx_n_s_save __pyx_mstate_global->__pyx_n_s_save +#define __pyx_n_s_score __pyx_mstate_global->__pyx_n_s_score +#define __pyx_n_s_seed __pyx_mstate_global->__pyx_n_s_seed +#define __pyx_n_s_seg __pyx_mstate_global->__pyx_n_s_seg +#define __pyx_n_s_set_verbosity __pyx_mstate_global->__pyx_n_s_set_verbosity +#define __pyx_n_s_sig_index __pyx_mstate_global->__pyx_n_s_sig_index +#define __pyx_n_s_sorted __pyx_mstate_global->__pyx_n_s_sorted +#define __pyx_n_s_spec __pyx_mstate_global->__pyx_n_s_spec +#define __pyx_n_s_split __pyx_mstate_global->__pyx_n_s_split +#define __pyx_n_s_splitlines __pyx_mstate_global->__pyx_n_s_splitlines +#define __pyx_n_s_splitpct __pyx_mstate_global->__pyx_n_s_splitpct +#define __pyx_n_s_sseg __pyx_mstate_global->__pyx_n_s_sseg +#define __pyx_n_s_start __pyx_mstate_global->__pyx_n_s_start +#define __pyx_n_s_strand __pyx_mstate_global->__pyx_n_s_strand +#define __pyx_n_s_subdata __pyx_mstate_global->__pyx_n_s_subdata +#define __pyx_n_s_subratio __pyx_mstate_global->__pyx_n_s_subratio +#define __pyx_n_s_substart __pyx_mstate_global->__pyx_n_s_substart +#define __pyx_n_s_substretch __pyx_mstate_global->__pyx_n_s_substretch +#define __pyx_n_s_sum __pyx_mstate_global->__pyx_n_s_sum +#define __pyx_n_s_sup __pyx_mstate_global->__pyx_n_s_sup +#define __pyx_n_s_sv_detect __pyx_mstate_global->__pyx_n_s_sv_detect +#define __pyx_n_s_temp1 __pyx_mstate_global->__pyx_n_s_temp1 +#define __pyx_kp_s_temp1_fa __pyx_mstate_global->__pyx_kp_s_temp1_fa +#define __pyx_kp_s_temp2_fa __pyx_mstate_global->__pyx_kp_s_temp2_fa +#define __pyx_n_s_test __pyx_mstate_global->__pyx_n_s_test +#define __pyx_n_s_total_del __pyx_mstate_global->__pyx_n_s_total_del +#define __pyx_n_s_total_gap __pyx_mstate_global->__pyx_n_s_total_gap +#define __pyx_n_s_total_ins __pyx_mstate_global->__pyx_n_s_total_ins +#define __pyx_n_s_total_lines __pyx_mstate_global->__pyx_n_s_total_lines +#define __pyx_n_s_total_mismatch __pyx_mstate_global->__pyx_n_s_total_mismatch +#define __pyx_n_s_total_out __pyx_mstate_global->__pyx_n_s_total_out +#define __pyx_n_s_total_score __pyx_mstate_global->__pyx_n_s_total_score +#define __pyx_n_s_total_subdata __pyx_mstate_global->__pyx_n_s_total_subdata +#define __pyx_n_s_tup __pyx_mstate_global->__pyx_n_s_tup +#define __pyx_n_s_w __pyx_mstate_global->__pyx_n_s_w +#define __pyx_n_s_wk_dir __pyx_mstate_global->__pyx_n_s_wk_dir +#define __pyx_n_s_write __pyx_mstate_global->__pyx_n_s_write +#define __pyx_n_s_x __pyx_mstate_global->__pyx_n_s_x +#define __pyx_n_s_y __pyx_mstate_global->__pyx_n_s_y +#define __pyx_float_0_0 __pyx_mstate_global->__pyx_float_0_0 +#define __pyx_int_0 __pyx_mstate_global->__pyx_int_0 +#define __pyx_int_1 __pyx_mstate_global->__pyx_int_1 +#define __pyx_int_2 __pyx_mstate_global->__pyx_int_2 +#define __pyx_int_3 __pyx_mstate_global->__pyx_int_3 +#define __pyx_int_4 __pyx_mstate_global->__pyx_int_4 +#define __pyx_int_5 __pyx_mstate_global->__pyx_int_5 +#define __pyx_int_6 __pyx_mstate_global->__pyx_int_6 +#define __pyx_int_16 __pyx_mstate_global->__pyx_int_16 +#define __pyx_int_20 __pyx_mstate_global->__pyx_int_20 +#define __pyx_int_30 __pyx_mstate_global->__pyx_int_30 +#define __pyx_int_40 __pyx_mstate_global->__pyx_int_40 +#define __pyx_int_100 __pyx_mstate_global->__pyx_int_100 +#define __pyx_int_200 __pyx_mstate_global->__pyx_int_200 +#define __pyx_int_256 __pyx_mstate_global->__pyx_int_256 +#define __pyx_int_272 __pyx_mstate_global->__pyx_int_272 +#define __pyx_int_2048 __pyx_mstate_global->__pyx_int_2048 +#define __pyx_int_2064 __pyx_mstate_global->__pyx_int_2064 +#define __pyx_tuple_ __pyx_mstate_global->__pyx_tuple_ +#define __pyx_slice__6 __pyx_mstate_global->__pyx_slice__6 +#define __pyx_slice__7 __pyx_mstate_global->__pyx_slice__7 +#define __pyx_tuple__12 __pyx_mstate_global->__pyx_tuple__12 +#define __pyx_tuple__14 __pyx_mstate_global->__pyx_tuple__14 +#define __pyx_tuple__16 __pyx_mstate_global->__pyx_tuple__16 +#define __pyx_tuple__17 __pyx_mstate_global->__pyx_tuple__17 +#define __pyx_tuple__19 __pyx_mstate_global->__pyx_tuple__19 +#define __pyx_tuple__21 __pyx_mstate_global->__pyx_tuple__21 +#define __pyx_tuple__23 __pyx_mstate_global->__pyx_tuple__23 +#define __pyx_codeobj__13 __pyx_mstate_global->__pyx_codeobj__13 +#define __pyx_codeobj__15 __pyx_mstate_global->__pyx_codeobj__15 +#define __pyx_codeobj__18 __pyx_mstate_global->__pyx_codeobj__18 +#define __pyx_codeobj__20 __pyx_mstate_global->__pyx_codeobj__20 +#define __pyx_codeobj__22 __pyx_mstate_global->__pyx_codeobj__22 +#define __pyx_codeobj__24 __pyx_mstate_global->__pyx_codeobj__24 +/* #### Code section: module_code ### */ /* "nanovar/nv_bam_parser.pyx":29 * @@ -1938,9 +3458,21 @@ static PyObject *__pyx_codeobj__21; */ /* Python wrapper */ -static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ -static PyMethodDef __pyx_mdef_7nanovar_13nv_bam_parser_1bam_parse = {"bam_parse", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse, METH_VARARGS|METH_KEYWORDS, 0}; -static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { +static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse(PyObject *__pyx_self, +#if CYTHON_METH_FASTCALL +PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds +#else +PyObject *__pyx_args, PyObject *__pyx_kwds +#endif +); /*proto*/ +static PyMethodDef __pyx_mdef_7nanovar_13nv_bam_parser_1bam_parse = {"bam_parse", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; +static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse(PyObject *__pyx_self, +#if CYTHON_METH_FASTCALL +PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds +#else +PyObject *__pyx_args, PyObject *__pyx_kwds +#endif +) { PyObject *__pyx_v_bam = 0; unsigned int __pyx_v_minlen; float __pyx_v_splitpct; @@ -1948,91 +3480,131 @@ static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse(PyObject *__pyx_se PyObject *__pyx_v_wk_dir = 0; PyObject *__pyx_v_filter_file = 0; PyObject *__pyx_v_contig_omit = 0; + #if !CYTHON_METH_FASTCALL + CYTHON_UNUSED Py_ssize_t __pyx_nargs; + #endif + CYTHON_UNUSED PyObject *const *__pyx_kwvalues; + PyObject* values[7] = {0,0,0,0,0,0,0}; int __pyx_lineno = 0; const char *__pyx_filename = NULL; int __pyx_clineno = 0; PyObject *__pyx_r = 0; __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("bam_parse (wrapper)", 0); - { - static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_bam,&__pyx_n_s_minlen,&__pyx_n_s_splitpct,&__pyx_n_s_minalign,&__pyx_n_s_wk_dir,&__pyx_n_s_filter_file,&__pyx_n_s_contig_omit,0}; - PyObject* values[7] = {0,0,0,0,0,0,0}; - if (unlikely(__pyx_kwds)) { - Py_ssize_t kw_args; - const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); - switch (pos_args) { - case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6); + #if !CYTHON_METH_FASTCALL + #if CYTHON_ASSUME_SAFE_MACROS + __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); + #else + __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; + #endif + #endif + __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); + { + PyObject **__pyx_pyargnames[] = {&__pyx_n_s_bam,&__pyx_n_s_minlen,&__pyx_n_s_splitpct,&__pyx_n_s_minalign,&__pyx_n_s_wk_dir,&__pyx_n_s_filter_file,&__pyx_n_s_contig_omit,0}; + if (__pyx_kwds) { + Py_ssize_t kw_args; + switch (__pyx_nargs) { + case 7: values[6] = __Pyx_Arg_FASTCALL(__pyx_args, 6); CYTHON_FALLTHROUGH; - case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5); + case 6: values[5] = __Pyx_Arg_FASTCALL(__pyx_args, 5); CYTHON_FALLTHROUGH; - case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); + case 5: values[4] = __Pyx_Arg_FASTCALL(__pyx_args, 4); CYTHON_FALLTHROUGH; - case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); + case 4: values[3] = __Pyx_Arg_FASTCALL(__pyx_args, 3); CYTHON_FALLTHROUGH; - case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); + case 3: values[2] = __Pyx_Arg_FASTCALL(__pyx_args, 2); CYTHON_FALLTHROUGH; - case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); CYTHON_FALLTHROUGH; - case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } - kw_args = PyDict_Size(__pyx_kwds); - switch (pos_args) { + kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); + switch (__pyx_nargs) { case 0: - if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_bam)) != 0)) kw_args--; + if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_bam)) != 0)) { + (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); + kw_args--; + } + else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 29, __pyx_L3_error) else goto __pyx_L5_argtuple_error; CYTHON_FALLTHROUGH; case 1: - if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_minlen)) != 0)) kw_args--; + if (likely((values[1] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_minlen)) != 0)) { + (void)__Pyx_Arg_NewRef_FASTCALL(values[1]); + kw_args--; + } + else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 29, __pyx_L3_error) else { __Pyx_RaiseArgtupleInvalid("bam_parse", 1, 7, 7, 1); __PYX_ERR(0, 29, __pyx_L3_error) } CYTHON_FALLTHROUGH; case 2: - if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_splitpct)) != 0)) kw_args--; + if (likely((values[2] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_splitpct)) != 0)) { + (void)__Pyx_Arg_NewRef_FASTCALL(values[2]); + kw_args--; + } + else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 29, __pyx_L3_error) else { __Pyx_RaiseArgtupleInvalid("bam_parse", 1, 7, 7, 2); __PYX_ERR(0, 29, __pyx_L3_error) } CYTHON_FALLTHROUGH; case 3: - if 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0)) __PYX_ERR(0, 29, __pyx_L3_error) + const Py_ssize_t kwd_pos_args = __pyx_nargs; + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "bam_parse") < 0)) __PYX_ERR(0, 29, __pyx_L3_error) } - } else if (PyTuple_GET_SIZE(__pyx_args) != 7) { + } else if (unlikely(__pyx_nargs != 7)) { goto __pyx_L5_argtuple_error; } else { - values[0] = PyTuple_GET_ITEM(__pyx_args, 0); - values[1] = PyTuple_GET_ITEM(__pyx_args, 1); - values[2] = PyTuple_GET_ITEM(__pyx_args, 2); - values[3] = PyTuple_GET_ITEM(__pyx_args, 3); - values[4] = PyTuple_GET_ITEM(__pyx_args, 4); - values[5] = PyTuple_GET_ITEM(__pyx_args, 5); - values[6] = PyTuple_GET_ITEM(__pyx_args, 6); + values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); + values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1); + values[2] = __Pyx_Arg_FASTCALL(__pyx_args, 2); + values[3] = __Pyx_Arg_FASTCALL(__pyx_args, 3); + values[4] = __Pyx_Arg_FASTCALL(__pyx_args, 4); + values[5] = __Pyx_Arg_FASTCALL(__pyx_args, 5); + values[6] = __Pyx_Arg_FASTCALL(__pyx_args, 6); } __pyx_v_bam = values[0]; __pyx_v_minlen = __Pyx_PyInt_As_unsigned_int(values[1]); if (unlikely((__pyx_v_minlen == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 29, __pyx_L3_error) @@ -2042,10 +3614,18 @@ static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse(PyObject *__pyx_se __pyx_v_filter_file = values[5]; __pyx_v_contig_omit = values[6]; } - goto __pyx_L4_argument_unpacking_done; + goto __pyx_L6_skip; __pyx_L5_argtuple_error:; - __Pyx_RaiseArgtupleInvalid("bam_parse", 1, 7, 7, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 29, __pyx_L3_error) + __Pyx_RaiseArgtupleInvalid("bam_parse", 1, 7, 7, __pyx_nargs); __PYX_ERR(0, 29, __pyx_L3_error) + __pyx_L6_skip:; + goto __pyx_L4_argument_unpacking_done; __pyx_L3_error:; + { + Py_ssize_t __pyx_temp; + for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { + __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); + } + } __Pyx_AddTraceback("nanovar.nv_bam_parser.bam_parse", __pyx_clineno, __pyx_lineno, __pyx_filename); __Pyx_RefNannyFinishContext(); return NULL; @@ -2058,11 +3638,17 @@ static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse(PyObject *__pyx_se __pyx_L1_error:; __pyx_r = NULL; __pyx_L0:; + { + Py_ssize_t __pyx_temp; + for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { + __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); + } + } __Pyx_RefNannyFinishContext(); return __pyx_r; } -/* "nanovar/nv_bam_parser.pyx":146 +/* "nanovar/nv_bam_parser.pyx":148 * del_list, ins_list, minalign) * contig_collect = sorted(set(contig_collect)) * lines_sort = sorted(sorted(total_lines, key=lambda x: x[1], reverse=True), key=lambda y: y[0]) # <<<<<<<<<<<<<< @@ -2071,15 +3657,97 @@ static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_1bam_parse(PyObject *__pyx_se */ /* Python wrapper */ -static PyObject 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CYTHON_METH_FASTCALL +PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds +#else +PyObject *__pyx_args, PyObject *__pyx_kwds +#endif +) { + PyObject *__pyx_v_x = 0; + #if !CYTHON_METH_FASTCALL + CYTHON_UNUSED Py_ssize_t __pyx_nargs; + #endif + CYTHON_UNUSED PyObject *const *__pyx_kwvalues; + PyObject* values[1] = {0}; + int __pyx_lineno = 0; + const char *__pyx_filename = NULL; + int __pyx_clineno = 0; PyObject *__pyx_r = 0; __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("lambda (wrapper)", 0); - __pyx_r = __pyx_lambda_funcdef_lambda(__pyx_self, ((PyObject *)__pyx_v_x)); + #if !CYTHON_METH_FASTCALL + #if CYTHON_ASSUME_SAFE_MACROS + __pyx_nargs = PyTuple_GET_SIZE(__pyx_args); + #else + __pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL; + #endif + #endif + __pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs); + { + PyObject **__pyx_pyargnames[] = {&__pyx_n_s_x,0}; + if (__pyx_kwds) { + Py_ssize_t kw_args; + switch (__pyx_nargs) { + case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); + CYTHON_FALLTHROUGH; + case 0: break; + default: goto __pyx_L5_argtuple_error; + } + kw_args = __Pyx_NumKwargs_FASTCALL(__pyx_kwds); + switch (__pyx_nargs) { + case 0: + if (likely((values[0] = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_x)) != 0)) { + (void)__Pyx_Arg_NewRef_FASTCALL(values[0]); + kw_args--; + } + else if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 148, __pyx_L3_error) + else goto __pyx_L5_argtuple_error; + } + if (unlikely(kw_args > 0)) { + const Py_ssize_t kwd_pos_args = __pyx_nargs; + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "lambda") < 0)) __PYX_ERR(0, 148, __pyx_L3_error) + } + } else if (unlikely(__pyx_nargs != 1)) { + goto __pyx_L5_argtuple_error; + } else { + values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0); + } + __pyx_v_x = values[0]; + } + goto __pyx_L6_skip; + __pyx_L5_argtuple_error:; + __Pyx_RaiseArgtupleInvalid("lambda", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 148, __pyx_L3_error) + __pyx_L6_skip:; + goto __pyx_L4_argument_unpacking_done; + __pyx_L3_error:; + { + Py_ssize_t __pyx_temp; + for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { + __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); + } + } + __Pyx_AddTraceback("nanovar.nv_bam_parser.bam_parse.lambda", __pyx_clineno, __pyx_lineno, __pyx_filename); + __Pyx_RefNannyFinishContext(); + return NULL; + __pyx_L4_argument_unpacking_done:; + __pyx_r = __pyx_lambda_funcdef_lambda(__pyx_self, __pyx_v_x); /* function exit code */ + { + Py_ssize_t __pyx_temp; + for (__pyx_temp=0; __pyx_temp < (Py_ssize_t)(sizeof(values)/sizeof(values[0])); ++__pyx_temp) { + __Pyx_Arg_XDECREF_FASTCALL(values[__pyx_temp]); + } + } __Pyx_RefNannyFinishContext(); return __pyx_r; } @@ -2091,9 +3759,9 @@ static PyObject *__pyx_lambda_funcdef_lambda(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_lineno = 0; 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*__pyx_pw_7nanovar_13nv_bam_parser_9bam_parse_1lambda1(PyObject *__pyx_self, PyObject *__pyx_v_y) { +static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_9bam_parse_1lambda1(PyObject *__pyx_self, +#if CYTHON_METH_FASTCALL +PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds +#else +PyObject *__pyx_args, PyObject *__pyx_kwds +#endif +); /*proto*/ +static PyMethodDef __pyx_mdef_7nanovar_13nv_bam_parser_9bam_parse_1lambda1 = {"lambda1", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_7nanovar_13nv_bam_parser_9bam_parse_1lambda1, __Pyx_METH_FASTCALL|METH_KEYWORDS, 0}; +static PyObject *__pyx_pw_7nanovar_13nv_bam_parser_9bam_parse_1lambda1(PyObject *__pyx_self, +#if CYTHON_METH_FASTCALL +PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds +#else +PyObject *__pyx_args, PyObject *__pyx_kwds +#endif +) { + PyObject *__pyx_v_y = 0; + #if !CYTHON_METH_FASTCALL + CYTHON_UNUSED Py_ssize_t __pyx_nargs; + #endif + CYTHON_UNUSED PyObject 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1}, - {&__pyx_n_s_split, __pyx_k_split, sizeof(__pyx_k_split), 0, 0, 1, 1}, - {&__pyx_n_s_splitlines, __pyx_k_splitlines, sizeof(__pyx_k_splitlines), 0, 0, 1, 1}, - {&__pyx_n_s_splitpct, __pyx_k_splitpct, sizeof(__pyx_k_splitpct), 0, 0, 1, 1}, - {&__pyx_n_s_sseg, __pyx_k_sseg, sizeof(__pyx_k_sseg), 0, 0, 1, 1}, - {&__pyx_n_s_start, __pyx_k_start, sizeof(__pyx_k_start), 0, 0, 1, 1}, - {&__pyx_n_s_strand, __pyx_k_strand, sizeof(__pyx_k_strand), 0, 0, 1, 1}, - {&__pyx_n_s_subdata, __pyx_k_subdata, sizeof(__pyx_k_subdata), 0, 0, 1, 1}, - {&__pyx_n_s_subratio, __pyx_k_subratio, sizeof(__pyx_k_subratio), 0, 0, 1, 1}, - {&__pyx_n_s_substart, __pyx_k_substart, sizeof(__pyx_k_substart), 0, 0, 1, 1}, - {&__pyx_n_s_substretch, __pyx_k_substretch, sizeof(__pyx_k_substretch), 0, 0, 1, 1}, - {&__pyx_n_s_sum, __pyx_k_sum, sizeof(__pyx_k_sum), 0, 0, 1, 1}, - {&__pyx_n_s_sup, __pyx_k_sup, sizeof(__pyx_k_sup), 0, 0, 1, 1}, - {&__pyx_n_s_sv_detect, __pyx_k_sv_detect, sizeof(__pyx_k_sv_detect), 0, 0, 1, 1}, - {&__pyx_n_s_temp1, __pyx_k_temp1, sizeof(__pyx_k_temp1), 0, 0, 1, 1}, - {&__pyx_kp_s_temp1_fa, __pyx_k_temp1_fa, sizeof(__pyx_k_temp1_fa), 0, 0, 1, 0}, - {&__pyx_kp_s_temp2_fa, __pyx_k_temp2_fa, sizeof(__pyx_k_temp2_fa), 0, 0, 1, 0}, - {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1}, - {&__pyx_n_s_total_del, __pyx_k_total_del, sizeof(__pyx_k_total_del), 0, 0, 1, 1}, - {&__pyx_n_s_total_gap, __pyx_k_total_gap, sizeof(__pyx_k_total_gap), 0, 0, 1, 1}, - {&__pyx_n_s_total_ins, __pyx_k_total_ins, sizeof(__pyx_k_total_ins), 0, 0, 1, 1}, - {&__pyx_n_s_total_lines, __pyx_k_total_lines, sizeof(__pyx_k_total_lines), 0, 0, 1, 1}, - {&__pyx_n_s_total_mismatch, __pyx_k_total_mismatch, sizeof(__pyx_k_total_mismatch), 0, 0, 1, 1}, - {&__pyx_n_s_total_out, __pyx_k_total_out, sizeof(__pyx_k_total_out), 0, 0, 1, 1}, - {&__pyx_n_s_total_score, __pyx_k_total_score, sizeof(__pyx_k_total_score), 0, 0, 1, 1}, - {&__pyx_n_s_total_subdata, __pyx_k_total_subdata, sizeof(__pyx_k_total_subdata), 0, 0, 1, 1}, - {&__pyx_n_s_tup, __pyx_k_tup, sizeof(__pyx_k_tup), 0, 0, 1, 1}, - {&__pyx_n_s_w, __pyx_k_w, sizeof(__pyx_k_w), 0, 0, 1, 1}, - {&__pyx_n_s_wk_dir, __pyx_k_wk_dir, sizeof(__pyx_k_wk_dir), 0, 0, 1, 1}, - {&__pyx_n_s_write, __pyx_k_write, sizeof(__pyx_k_write), 0, 0, 1, 1}, - {&__pyx_n_s_x, __pyx_k_x, sizeof(__pyx_k_x), 0, 0, 1, 1}, - {0, 0, 0, 0, 0, 0, 0} -}; +/* #### Code section: pystring_table ### */ + +static int __Pyx_CreateStringTabAndInitStrings(void) { + __Pyx_StringTabEntry __pyx_string_tab[] = { + {&__pyx_n_s_AS, __pyx_k_AS, sizeof(__pyx_k_AS), 0, 0, 1, 1}, + {&__pyx_n_s_AlignmentFile, __pyx_k_AlignmentFile, sizeof(__pyx_k_AlignmentFile), 0, 0, 1, 1}, + {&__pyx_kp_s_Error_Unrecognized_CIGAR_transla, __pyx_k_Error_Unrecognized_CIGAR_transla, sizeof(__pyx_k_Error_Unrecognized_CIGAR_transla), 0, 0, 1, 0}, + {&__pyx_kp_s_Gap_dictionary_not_loaded, __pyx_k_Gap_dictionary_not_loaded, sizeof(__pyx_k_Gap_dictionary_not_loaded), 0, 0, 1, 0}, + {&__pyx_kp_s_Gap_dictionary_successfully_load, __pyx_k_Gap_dictionary_successfully_load, sizeof(__pyx_k_Gap_dictionary_successfully_load), 0, 0, 1, 0}, + {&__pyx_n_s_KeyError, __pyx_k_KeyError, sizeof(__pyx_k_KeyError), 0, 0, 1, 1}, + {&__pyx_n_s_NM, __pyx_k_NM, sizeof(__pyx_k_NM), 0, 0, 1, 1}, + {&__pyx_n_s__10, __pyx_k__10, sizeof(__pyx_k__10), 0, 0, 1, 1}, + {&__pyx_kp_u__11, __pyx_k__11, sizeof(__pyx_k__11), 0, 1, 0, 0}, + {&__pyx_kp_s__2, __pyx_k__2, sizeof(__pyx_k__2), 0, 0, 1, 0}, + {&__pyx_n_s__25, __pyx_k__25, sizeof(__pyx_k__25), 0, 0, 1, 1}, + {&__pyx_kp_s__3, __pyx_k__3, sizeof(__pyx_k__3), 0, 0, 1, 0}, + {&__pyx_kp_s__4, __pyx_k__4, sizeof(__pyx_k__4), 0, 0, 1, 0}, + {&__pyx_kp_s__5, __pyx_k__5, sizeof(__pyx_k__5), 0, 0, 1, 0}, + {&__pyx_kp_s__8, __pyx_k__8, sizeof(__pyx_k__8), 0, 0, 1, 0}, + {&__pyx_kp_s__9, __pyx_k__9, sizeof(__pyx_k__9), 0, 0, 1, 0}, + {&__pyx_n_s_add_sup_seq, __pyx_k_add_sup_seq, sizeof(__pyx_k_add_sup_seq), 0, 0, 1, 1}, + {&__pyx_n_s_adv, __pyx_k_adv, sizeof(__pyx_k_adv), 0, 0, 1, 1}, + {&__pyx_n_s_align_priority, __pyx_k_align_priority, sizeof(__pyx_k_align_priority), 0, 0, 1, 1}, + {&__pyx_n_s_aln, __pyx_k_aln, sizeof(__pyx_k_aln), 0, 0, 1, 1}, + {&__pyx_n_s_append, __pyx_k_append, sizeof(__pyx_k_append), 0, 0, 1, 1}, + {&__pyx_n_s_asyncio_coroutines, __pyx_k_asyncio_coroutines, sizeof(__pyx_k_asyncio_coroutines), 0, 0, 1, 1}, + {&__pyx_n_s_bam, __pyx_k_bam, sizeof(__pyx_k_bam), 0, 0, 1, 1}, + {&__pyx_n_s_bam_parse, __pyx_k_bam_parse, sizeof(__pyx_k_bam_parse), 0, 0, 1, 1}, + {&__pyx_n_s_bam_parse_locals_lambda, __pyx_k_bam_parse_locals_lambda, sizeof(__pyx_k_bam_parse_locals_lambda), 0, 0, 1, 1}, + {&__pyx_n_s_basecov, __pyx_k_basecov, sizeof(__pyx_k_basecov), 0, 0, 1, 1}, + {&__pyx_n_s_beddata, __pyx_k_beddata, sizeof(__pyx_k_beddata), 0, 0, 1, 1}, + {&__pyx_n_s_breakpoint_parser, __pyx_k_breakpoint_parser, sizeof(__pyx_k_breakpoint_parser), 0, 0, 1, 1}, + {&__pyx_n_s_cigar_tup, __pyx_k_cigar_tup, sizeof(__pyx_k_cigar_tup), 0, 0, 1, 1}, + {&__pyx_n_s_cigartuples, __pyx_k_cigartuples, sizeof(__pyx_k_cigartuples), 0, 0, 1, 1}, + {&__pyx_n_s_class_getitem, __pyx_k_class_getitem, sizeof(__pyx_k_class_getitem), 0, 0, 1, 1}, + {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1}, + {&__pyx_n_s_close, __pyx_k_close, sizeof(__pyx_k_close), 0, 0, 1, 1}, + {&__pyx_n_s_contig, __pyx_k_contig, sizeof(__pyx_k_contig), 0, 0, 1, 1}, + {&__pyx_n_s_contig_collect, __pyx_k_contig_collect, sizeof(__pyx_k_contig_collect), 0, 0, 1, 1}, + {&__pyx_n_s_contig_omit, __pyx_k_contig_omit, sizeof(__pyx_k_contig_omit), 0, 0, 1, 1}, + {&__pyx_n_s_contigs, __pyx_k_contigs, sizeof(__pyx_k_contigs), 0, 0, 1, 1}, + {&__pyx_n_s_critical, __pyx_k_critical, sizeof(__pyx_k_critical), 0, 0, 1, 1}, + {&__pyx_n_s_del_list, __pyx_k_del_list, sizeof(__pyx_k_del_list), 0, 0, 1, 1}, + {&__pyx_n_s_detect_out, __pyx_k_detect_out, sizeof(__pyx_k_detect_out), 0, 0, 1, 1}, + {&__pyx_n_s_end, __pyx_k_end, sizeof(__pyx_k_end), 0, 0, 1, 1}, + {&__pyx_n_s_entry, __pyx_k_entry, sizeof(__pyx_k_entry), 0, 0, 1, 1}, + {&__pyx_n_s_entry_parser, __pyx_k_entry_parser, sizeof(__pyx_k_entry_parser), 0, 0, 1, 1}, + {&__pyx_n_s_fail_qual_len, __pyx_k_fail_qual_len, sizeof(__pyx_k_fail_qual_len), 0, 0, 1, 1}, + {&__pyx_n_s_fail_qual_seq, __pyx_k_fail_qual_seq, sizeof(__pyx_k_fail_qual_seq), 0, 0, 1, 1}, + {&__pyx_n_s_fasta, __pyx_k_fasta, sizeof(__pyx_k_fasta), 0, 0, 1, 1}, + {&__pyx_n_s_fasta2, __pyx_k_fasta2, sizeof(__pyx_k_fasta2), 0, 0, 1, 1}, + {&__pyx_n_s_filter_file, __pyx_k_filter_file, sizeof(__pyx_k_filter_file), 0, 0, 1, 1}, + {&__pyx_n_s_final, __pyx_k_final, sizeof(__pyx_k_final), 0, 0, 1, 1}, + {&__pyx_n_s_flag, __pyx_k_flag, sizeof(__pyx_k_flag), 0, 0, 1, 1}, + {&__pyx_n_s_gap_path, __pyx_k_gap_path, sizeof(__pyx_k_gap_path), 0, 0, 1, 1}, + {&__pyx_n_s_gapdict, __pyx_k_gapdict, sizeof(__pyx_k_gapdict), 0, 0, 1, 1}, + {&__pyx_n_s_gaps, __pyx_k_gaps, sizeof(__pyx_k_gaps), 0, 0, 1, 1}, + {&__pyx_n_s_get_tag, __pyx_k_get_tag, sizeof(__pyx_k_get_tag), 0, 0, 1, 1}, + {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1}, + {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1}, + {&__pyx_n_s_infer_read_length, __pyx_k_infer_read_length, sizeof(__pyx_k_infer_read_length), 0, 0, 1, 1}, + {&__pyx_n_s_info, __pyx_k_info, sizeof(__pyx_k_info), 0, 0, 1, 1}, + {&__pyx_n_s_info_parse, __pyx_k_info_parse, sizeof(__pyx_k_info_parse), 0, 0, 1, 1}, + {&__pyx_n_s_info_parse_simple, __pyx_k_info_parse_simple, sizeof(__pyx_k_info_parse_simple), 0, 0, 1, 1}, + {&__pyx_n_s_initializing, __pyx_k_initializing, sizeof(__pyx_k_initializing), 0, 0, 1, 1}, + {&__pyx_n_s_ins_list, __pyx_k_ins_list, sizeof(__pyx_k_ins_list), 0, 0, 1, 1}, + {&__pyx_n_s_is_coroutine, __pyx_k_is_coroutine, sizeof(__pyx_k_is_coroutine), 0, 0, 1, 1}, + {&__pyx_n_s_join, __pyx_k_join, sizeof(__pyx_k_join), 0, 0, 1, 1}, + {&__pyx_n_s_key, __pyx_k_key, sizeof(__pyx_k_key), 0, 0, 1, 1}, + {&__pyx_n_s_line, __pyx_k_line, sizeof(__pyx_k_line), 0, 0, 1, 1}, + {&__pyx_n_s_lines, __pyx_k_lines, sizeof(__pyx_k_lines), 0, 0, 1, 1}, + {&__pyx_n_s_lines_sort, __pyx_k_lines_sort, sizeof(__pyx_k_lines_sort), 0, 0, 1, 1}, + {&__pyx_n_s_logging, __pyx_k_logging, sizeof(__pyx_k_logging), 0, 0, 1, 1}, + {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1}, + {&__pyx_n_s_main_dict, __pyx_k_main_dict, sizeof(__pyx_k_main_dict), 0, 0, 1, 1}, + {&__pyx_n_s_makegapdict, __pyx_k_makegapdict, sizeof(__pyx_k_makegapdict), 0, 0, 1, 1}, + {&__pyx_n_s_mapping_quality, __pyx_k_mapping_quality, sizeof(__pyx_k_mapping_quality), 0, 0, 1, 1}, + {&__pyx_n_s_matches, __pyx_k_matches, sizeof(__pyx_k_matches), 0, 0, 1, 1}, + {&__pyx_n_s_minalign, __pyx_k_minalign, sizeof(__pyx_k_minalign), 0, 0, 1, 1}, + {&__pyx_n_s_minlen, __pyx_k_minlen, sizeof(__pyx_k_minlen), 0, 0, 1, 1}, + {&__pyx_n_s_mismatch, __pyx_k_mismatch, sizeof(__pyx_k_mismatch), 0, 0, 1, 1}, + {&__pyx_n_s_mm, __pyx_k_mm, sizeof(__pyx_k_mm), 0, 0, 1, 1}, + {&__pyx_kp_s_mm_2, __pyx_k_mm_2, sizeof(__pyx_k_mm_2), 0, 0, 1, 0}, + {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1}, + {&__pyx_n_s_nanovar_nv_bam_parser, __pyx_k_nanovar_nv_bam_parser, sizeof(__pyx_k_nanovar_nv_bam_parser), 0, 0, 1, 1}, + {&__pyx_n_s_ndel, __pyx_k_ndel, sizeof(__pyx_k_ndel), 0, 0, 1, 1}, + {&__pyx_n_s_nins, __pyx_k_nins, sizeof(__pyx_k_nins), 0, 0, 1, 1}, + {&__pyx_n_s_nm, __pyx_k_nm, sizeof(__pyx_k_nm), 0, 0, 1, 1}, + {&__pyx_n_s_nsegs, __pyx_k_nsegs, sizeof(__pyx_k_nsegs), 0, 0, 1, 1}, + {&__pyx_kp_s_nv_bam_parser_pyx, __pyx_k_nv_bam_parser_pyx, sizeof(__pyx_k_nv_bam_parser_pyx), 0, 0, 1, 0}, + {&__pyx_n_s_nv_detect_algo, __pyx_k_nv_detect_algo, sizeof(__pyx_k_nv_detect_algo), 0, 0, 1, 1}, + {&__pyx_n_s_nv_parser, __pyx_k_nv_parser, sizeof(__pyx_k_nv_parser), 0, 0, 1, 1}, + {&__pyx_n_s_open, __pyx_k_open, sizeof(__pyx_k_open), 0, 0, 1, 1}, + {&__pyx_n_s_os, __pyx_k_os, sizeof(__pyx_k_os), 0, 0, 1, 1}, + {&__pyx_n_s_out1, __pyx_k_out1, sizeof(__pyx_k_out1), 0, 0, 1, 1}, + {&__pyx_n_s_out2, __pyx_k_out2, sizeof(__pyx_k_out2), 0, 0, 1, 1}, + {&__pyx_n_s_ovlt, __pyx_k_ovlt, sizeof(__pyx_k_ovlt), 0, 0, 1, 1}, + {&__pyx_n_s_parse_dict, __pyx_k_parse_dict, sizeof(__pyx_k_parse_dict), 0, 0, 1, 1}, + {&__pyx_n_s_path, __pyx_k_path, sizeof(__pyx_k_path), 0, 0, 1, 1}, + {&__pyx_n_s_pident, __pyx_k_pident, sizeof(__pyx_k_pident), 0, 0, 1, 1}, + {&__pyx_n_s_priority, __pyx_k_priority, sizeof(__pyx_k_priority), 0, 0, 1, 1}, + {&__pyx_n_s_pysam, __pyx_k_pysam, sizeof(__pyx_k_pysam), 0, 0, 1, 1}, + {&__pyx_n_s_qlen, __pyx_k_qlen, sizeof(__pyx_k_qlen), 0, 0, 1, 1}, + {&__pyx_n_s_qname, __pyx_k_qname, sizeof(__pyx_k_qname), 0, 0, 1, 1}, + {&__pyx_n_s_qseg, __pyx_k_qseg, sizeof(__pyx_k_qseg), 0, 0, 1, 1}, + {&__pyx_n_s_qstart, __pyx_k_qstart, sizeof(__pyx_k_qstart), 0, 0, 1, 1}, + {&__pyx_n_s_qstretch, __pyx_k_qstretch, sizeof(__pyx_k_qstretch), 0, 0, 1, 1}, + {&__pyx_n_s_query_alignment_length, __pyx_k_query_alignment_length, sizeof(__pyx_k_query_alignment_length), 0, 0, 1, 1}, + {&__pyx_n_s_query_name, __pyx_k_query_name, sizeof(__pyx_k_query_name), 0, 0, 1, 1}, + {&__pyx_n_s_query_sequence, __pyx_k_query_sequence, sizeof(__pyx_k_query_sequence), 0, 0, 1, 1}, + {&__pyx_n_s_query_sign, __pyx_k_query_sign, sizeof(__pyx_k_query_sign), 0, 0, 1, 1}, + {&__pyx_n_s_r, __pyx_k_r, sizeof(__pyx_k_r), 0, 0, 1, 1}, + {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1}, + {&__pyx_n_s_rb, __pyx_k_rb, sizeof(__pyx_k_rb), 0, 0, 1, 1}, + {&__pyx_n_s_read, __pyx_k_read, sizeof(__pyx_k_read), 0, 0, 1, 1}, + {&__pyx_n_s_readlen, __pyx_k_readlen, sizeof(__pyx_k_readlen), 0, 0, 1, 1}, + {&__pyx_n_s_reference_end, __pyx_k_reference_end, sizeof(__pyx_k_reference_end), 0, 0, 1, 1}, + {&__pyx_n_s_reference_name, __pyx_k_reference_name, sizeof(__pyx_k_reference_name), 0, 0, 1, 1}, + {&__pyx_n_s_reference_start, __pyx_k_reference_start, sizeof(__pyx_k_reference_start), 0, 0, 1, 1}, + {&__pyx_n_s_rend, __pyx_k_rend, sizeof(__pyx_k_rend), 0, 0, 1, 1}, + {&__pyx_n_s_repeat_dict, __pyx_k_repeat_dict, sizeof(__pyx_k_repeat_dict), 0, 0, 1, 1}, + {&__pyx_n_s_reverse, __pyx_k_reverse, sizeof(__pyx_k_reverse), 0, 0, 1, 1}, + {&__pyx_n_s_rgapdata, __pyx_k_rgapdata, sizeof(__pyx_k_rgapdata), 0, 0, 1, 1}, + {&__pyx_n_s_rlendict, __pyx_k_rlendict, sizeof(__pyx_k_rlendict), 0, 0, 1, 1}, + {&__pyx_n_s_rname, __pyx_k_rname, sizeof(__pyx_k_rname), 0, 0, 1, 1}, + {&__pyx_n_s_round, __pyx_k_round, sizeof(__pyx_k_round), 0, 0, 1, 1}, + {&__pyx_n_s_rstart, __pyx_k_rstart, sizeof(__pyx_k_rstart), 0, 0, 1, 1}, + {&__pyx_kp_s_s_s_s_s_s, __pyx_k_s_s_s_s_s, sizeof(__pyx_k_s_s_s_s_s), 0, 0, 1, 0}, + {&__pyx_kp_s_s_s_s_s_s_s_s_s_s_s_s_s_s_s, __pyx_k_s_s_s_s_s_s_s_s_s_s_s_s_s_s, sizeof(__pyx_k_s_s_s_s_s_s_s_s_s_s_s_s_s_s), 0, 0, 1, 0}, + {&__pyx_n_s_sam, __pyx_k_sam, sizeof(__pyx_k_sam), 0, 0, 1, 1}, + {&__pyx_n_s_save, __pyx_k_save, 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__pyx_pymod_exec_nv_bam_parser(PyObject* module); /*proto*/ +static PyModuleDef_Slot __pyx_moduledef_slots[] = { + {Py_mod_create, (void*)__pyx_pymod_create}, + {Py_mod_exec, (void*)__pyx_pymod_exec_nv_bam_parser}, + {0, NULL} +}; +#endif + +#ifdef __cplusplus +namespace { + struct PyModuleDef __pyx_moduledef = + #else + static struct PyModuleDef __pyx_moduledef = + #endif + { + PyModuleDef_HEAD_INIT, + "nv_bam_parser", + __pyx_k_Parses_BAM_file_and_analyse_CIG, /* m_doc */ + #if CYTHON_PEP489_MULTI_PHASE_INIT + 0, /* m_size */ + #elif CYTHON_USE_MODULE_STATE + sizeof(__pyx_mstate), /* m_size */ + #else + -1, /* m_size */ + #endif + __pyx_methods /* m_methods */, + #if CYTHON_PEP489_MULTI_PHASE_INIT + __pyx_moduledef_slots, /* m_slots */ + #else + NULL, /* m_reload */ + #endif + #if CYTHON_USE_MODULE_STATE + __pyx_m_traverse, /* m_traverse */ + __pyx_m_clear, /* m_clear */ + NULL /* m_free */ + #else + NULL, /* m_traverse */ + NULL, /* m_clear */ + NULL /* m_free */ + #endif + }; + 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to_name, value); +#else result = PyDict_SetItemString(moddict, to_name, value); +#endif } Py_DECREF(value); } else if (PyErr_ExceptionMatches(PyExc_AttributeError)) { @@ -10753,8 +12973,9 @@ static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject } return result; } -static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, CYTHON_UNUSED PyModuleDef *def) { +static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def) { PyObject *module = NULL, *moddict, *modname; + CYTHON_UNUSED_VAR(def); if (__Pyx_check_single_interpreter()) return NULL; if (__pyx_m) @@ -10764,8 +12985,12 @@ static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, CYTHON_UNU module = PyModule_NewObject(modname); Py_DECREF(modname); if (unlikely(!module)) goto bad; +#if CYTHON_COMPILING_IN_LIMITED_API + moddict = module; +#else moddict = PyModule_GetDict(module); if (unlikely(!moddict)) goto bad; +#endif if 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Py_XDECREF(tmp_tb); +#endif +} +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { +#if PY_VERSION_HEX >= 0x030C00A6 + PyObject* exc_value; + exc_value = tstate->current_exception; + tstate->current_exception = 0; + *value = exc_value; + *type = NULL; + *tb = NULL; + if (exc_value) { + *type = (PyObject*) Py_TYPE(exc_value); + Py_INCREF(*type); + #if CYTHON_COMPILING_IN_CPYTHON + *tb = ((PyBaseExceptionObject*) exc_value)->traceback; + Py_XINCREF(*tb); + #else + *tb = PyException_GetTraceback(exc_value); + #endif + } +#else + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +#endif +} +#endif + +/* PyObjectGetAttrStr */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_getattro)) + return tp->tp_getattro(obj, attr_name); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_getattr)) + return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); +#endif + return PyObject_GetAttr(obj, attr_name); +} +#endif + +/* PyObjectGetAttrStrNoError */ +#if __PYX_LIMITED_VERSION_HEX < 0x030d00A1 +static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) { + __Pyx_PyThreadState_declare + __Pyx_PyThreadState_assign + if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError))) + __Pyx_PyErr_Clear(); +} +#endif +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) { + PyObject *result; +#if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1 + (void) PyObject_GetOptionalAttr(obj, attr_name, &result); + return result; +#else +#if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1 + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) { + return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1); + } +#endif + result = __Pyx_PyObject_GetAttrStr(obj, attr_name); + if (unlikely(!result)) { + __Pyx_PyObject_GetAttrStr_ClearAttributeError(); + } + return result; +#endif +} + +/* GetBuiltinName */ +static PyObject *__Pyx_GetBuiltinName(PyObject *name) { + PyObject* result = __Pyx_PyObject_GetAttrStrNoError(__pyx_b, name); + if (unlikely(!result) && !PyErr_Occurred()) { + PyErr_Format(PyExc_NameError, +#if PY_MAJOR_VERSION >= 3 + "name '%U' is not defined", name); +#else + "name '%.200s' is not defined", PyString_AS_STRING(name)); +#endif + } + return result; +} + +/* TupleAndListFromArray */ +#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE void __Pyx_copy_object_array(PyObject *const *CYTHON_RESTRICT src, PyObject** CYTHON_RESTRICT dest, Py_ssize_t length) { + PyObject *v; + Py_ssize_t i; + for (i = 0; i < length; i++) { + v = dest[i] = src[i]; + Py_INCREF(v); + } +} +static CYTHON_INLINE PyObject * +__Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n) +{ + PyObject *res; + if (n <= 0) { + Py_INCREF(__pyx_empty_tuple); + return __pyx_empty_tuple; + } + res = PyTuple_New(n); + if (unlikely(res == NULL)) return NULL; + __Pyx_copy_object_array(src, ((PyTupleObject*)res)->ob_item, n); + return res; +} +static CYTHON_INLINE PyObject * +__Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n) +{ + PyObject *res; + if (n <= 0) { + return PyList_New(0); + } + res = PyList_New(n); + if (unlikely(res == NULL)) return NULL; + __Pyx_copy_object_array(src, ((PyListObject*)res)->ob_item, n); + return res; +} +#endif + +/* BytesEquals */ +static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) { +#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API + return PyObject_RichCompareBool(s1, s2, equals); +#else + if (s1 == s2) { + return (equals == Py_EQ); + } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) { + const char *ps1, *ps2; + Py_ssize_t length = PyBytes_GET_SIZE(s1); + if (length != PyBytes_GET_SIZE(s2)) + return (equals == Py_NE); + ps1 = PyBytes_AS_STRING(s1); + ps2 = PyBytes_AS_STRING(s2); + if (ps1[0] != ps2[0]) { + return (equals == Py_NE); + } else if (length == 1) { + return (equals == Py_EQ); + } else { + int result; +#if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000) + Py_hash_t hash1, hash2; + hash1 = ((PyBytesObject*)s1)->ob_shash; + hash2 = ((PyBytesObject*)s2)->ob_shash; + if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { + return (equals == Py_NE); + } +#endif + result = memcmp(ps1, ps2, (size_t)length); + return (equals == Py_EQ) ? (result == 0) : (result != 0); + } + } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) { + return (equals == Py_NE); + } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) { + return (equals == Py_NE); + } else { + int result; + PyObject* py_result = PyObject_RichCompare(s1, s2, equals); + if (!py_result) + return -1; + result = __Pyx_PyObject_IsTrue(py_result); + Py_DECREF(py_result); + return result; + } +#endif +} -/* --- Runtime support code --- */ -/* Refnanny */ -#if CYTHON_REFNANNY -static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { - PyObject *m = NULL, *p = NULL; - void *r = NULL; - m = PyImport_ImportModule(modname); - if (!m) goto end; - p = PyObject_GetAttrString(m, "RefNannyAPI"); - if (!p) goto end; - r = PyLong_AsVoidPtr(p); -end: - Py_XDECREF(p); - Py_XDECREF(m); - return (__Pyx_RefNannyAPIStruct *)r; -} +/* UnicodeEquals */ +static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) { +#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API + return PyObject_RichCompareBool(s1, s2, equals); +#else +#if PY_MAJOR_VERSION < 3 + PyObject* owned_ref = NULL; #endif - -/* PyObjectGetAttrStr */ -#if CYTHON_USE_TYPE_SLOTS -static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { - PyTypeObject* tp = Py_TYPE(obj); - if (likely(tp->tp_getattro)) - return tp->tp_getattro(obj, attr_name); + int s1_is_unicode, s2_is_unicode; + if (s1 == s2) { + goto return_eq; + } + s1_is_unicode = PyUnicode_CheckExact(s1); + s2_is_unicode = PyUnicode_CheckExact(s2); #if PY_MAJOR_VERSION < 3 - if (likely(tp->tp_getattr)) - return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); + if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) { + owned_ref = PyUnicode_FromObject(s2); + if (unlikely(!owned_ref)) + return -1; + s2 = owned_ref; + s2_is_unicode = 1; + } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) { + owned_ref = PyUnicode_FromObject(s1); + if (unlikely(!owned_ref)) + return -1; + s1 = owned_ref; + s1_is_unicode = 1; + } else if (((!s2_is_unicode) & (!s1_is_unicode))) { + return __Pyx_PyBytes_Equals(s1, s2, equals); + } #endif - return PyObject_GetAttr(obj, attr_name); -} + if (s1_is_unicode & s2_is_unicode) { + Py_ssize_t length; + int kind; + void *data1, *data2; + if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0)) + return -1; + length = __Pyx_PyUnicode_GET_LENGTH(s1); + if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) { + goto return_ne; + } +#if CYTHON_USE_UNICODE_INTERNALS + { + Py_hash_t hash1, hash2; + #if CYTHON_PEP393_ENABLED + hash1 = ((PyASCIIObject*)s1)->hash; + hash2 = ((PyASCIIObject*)s2)->hash; + #else + hash1 = ((PyUnicodeObject*)s1)->hash; + hash2 = ((PyUnicodeObject*)s2)->hash; + #endif + if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { + goto return_ne; + } + } #endif - -/* GetBuiltinName */ -static PyObject *__Pyx_GetBuiltinName(PyObject *name) { - PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); - if (unlikely(!result)) { - PyErr_Format(PyExc_NameError, -#if PY_MAJOR_VERSION >= 3 - "name '%U' is not defined", name); -#else - "name '%.200s' is not defined", PyString_AS_STRING(name)); + kind = __Pyx_PyUnicode_KIND(s1); + if (kind != __Pyx_PyUnicode_KIND(s2)) { + goto return_ne; + } + data1 = __Pyx_PyUnicode_DATA(s1); + data2 = __Pyx_PyUnicode_DATA(s2); + if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) { + goto return_ne; + } else if (length == 1) { + goto return_eq; + } else { + int result = memcmp(data1, data2, (size_t)(length * kind)); + #if PY_MAJOR_VERSION < 3 + Py_XDECREF(owned_ref); + #endif + return (equals == Py_EQ) ? (result == 0) : (result != 0); + } + } else if ((s1 == Py_None) & s2_is_unicode) { + goto return_ne; + } else if ((s2 == Py_None) & s1_is_unicode) { + goto return_ne; + } else { + int result; + PyObject* py_result = PyObject_RichCompare(s1, s2, equals); + #if PY_MAJOR_VERSION < 3 + Py_XDECREF(owned_ref); + #endif + if (!py_result) + return -1; + result = __Pyx_PyObject_IsTrue(py_result); + Py_DECREF(py_result); + return result; + } +return_eq: + #if PY_MAJOR_VERSION < 3 + Py_XDECREF(owned_ref); + #endif + return (equals == Py_EQ); +return_ne: + #if PY_MAJOR_VERSION < 3 + Py_XDECREF(owned_ref); + #endif + return (equals == Py_NE); #endif +} + +/* fastcall */ +#if CYTHON_METH_FASTCALL +static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s) +{ + Py_ssize_t i, n = PyTuple_GET_SIZE(kwnames); + for (i = 0; i < n; i++) + { + if (s == PyTuple_GET_ITEM(kwnames, i)) return kwvalues[i]; } - return result; + for (i = 0; i < n; i++) + { + int eq = __Pyx_PyUnicode_Equals(s, PyTuple_GET_ITEM(kwnames, i), Py_EQ); + if (unlikely(eq != 0)) { + if (unlikely(eq < 0)) return NULL; + return kwvalues[i]; + } + } + return NULL; +} +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 +CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues) { + Py_ssize_t i, nkwargs = PyTuple_GET_SIZE(kwnames); + PyObject *dict; + dict = PyDict_New(); + if (unlikely(!dict)) + return NULL; + for (i=0; i= size) break; +#if CYTHON_AVOID_BORROWED_REFS + key = __Pyx_PySequence_ITEM(kwds, pos); + if (!key) goto bad; +#elif CYTHON_ASSUME_SAFE_MACROS + key = PyTuple_GET_ITEM(kwds, pos); +#else + key = PyTuple_GetItem(kwds, pos); + if (!key) goto bad; +#endif + value = kwvalues[pos]; + pos++; + } + else + { + if (!PyDict_Next(kwds, &pos, &key, &value)) break; +#if CYTHON_AVOID_BORROWED_REFS + Py_INCREF(key); +#endif + } name = first_kw_arg; while (*name && (**name != key)) name++; if (*name) { values[name-argnames] = value; +#if CYTHON_AVOID_BORROWED_REFS + Py_INCREF(value); + Py_DECREF(key); +#endif + key = NULL; + value = NULL; continue; } +#if !CYTHON_AVOID_BORROWED_REFS + Py_INCREF(key); +#endif + Py_INCREF(value); name = first_kw_arg; #if PY_MAJOR_VERSION < 3 if (likely(PyString_Check(key))) { @@ -11193,6 +13859,9 @@ static int __Pyx_ParseOptionalKeywords( if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) && _PyString_Eq(**name, key)) { values[name-argnames] = value; +#if CYTHON_AVOID_BORROWED_REFS + value = NULL; +#endif break; } name++; @@ -11213,14 +13882,18 @@ static int __Pyx_ParseOptionalKeywords( #endif if (likely(PyUnicode_Check(key))) { while (*name) { - int cmp = (**name == key) ? 0 : + int cmp = ( #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (__Pyx_PyUnicode_GET_LENGTH(**name) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 : #endif - PyUnicode_Compare(**name, key); + PyUnicode_Compare(**name, key) + ); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) { values[name-argnames] = value; +#if CYTHON_AVOID_BORROWED_REFS + value = NULL; +#endif break; } name++; @@ -11247,6 +13920,8 @@ static int __Pyx_ParseOptionalKeywords( goto invalid_keyword; } } + Py_XDECREF(key); + Py_XDECREF(value); return 0; arg_passed_twice: __Pyx_RaiseDoubleKeywordsError(function_name, key); @@ -11256,21 +13931,26 @@ static int __Pyx_ParseOptionalKeywords( "%.200s() keywords must be strings", function_name); goto bad; invalid_keyword: - PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION < 3 + PyErr_Format(PyExc_TypeError, "%.200s() got an unexpected keyword argument '%.200s'", function_name, PyString_AsString(key)); #else + PyErr_Format(PyExc_TypeError, "%s() got an unexpected keyword argument '%U'", function_name, key); #endif bad: + Py_XDECREF(key); + Py_XDECREF(value); return -1; } /* ArgTypeTest */ static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact) { + __Pyx_TypeName type_name; + __Pyx_TypeName obj_type_name; if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; @@ -11283,16 +13963,20 @@ static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *nam else { if (likely(__Pyx_TypeCheck(obj, type))) return 1; } + type_name = __Pyx_PyType_GetName(type); + obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, - "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", - name, type->tp_name, Py_TYPE(obj)->tp_name); + "Argument '%.200s' has incorrect type (expected " __Pyx_FMT_TYPENAME + ", got " __Pyx_FMT_TYPENAME ")", name, type_name, obj_type_name); + __Pyx_DECREF_TypeName(type_name); + __Pyx_DECREF_TypeName(obj_type_name); return 0; } /* GetItemInt */ static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { PyObject *r; - if (!j) return NULL; + if (unlikely(!j)) return NULL; r = PyObject_GetItem(o, j); Py_DECREF(j); return r; @@ -11353,10 +14037,18 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, return r; } } else { - PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; - if (likely(m && m->sq_item)) { - if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { - Py_ssize_t l = m->sq_length(o); + PyMappingMethods *mm = Py_TYPE(o)->tp_as_mapping; + PySequenceMethods *sm = Py_TYPE(o)->tp_as_sequence; + if (mm && mm->mp_subscript) { + PyObject *r, *key = PyInt_FromSsize_t(i); + if (unlikely(!key)) return NULL; + r = mm->mp_subscript(o, key); + Py_DECREF(key); + return r; + } + if (likely(sm && sm->sq_item)) { + if (wraparound && unlikely(i < 0) && likely(sm->sq_length)) { + Py_ssize_t l = sm->sq_length(o); if (likely(l >= 0)) { i += l; } else { @@ -11365,11 +14057,11 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, PyErr_Clear(); } } - return m->sq_item(o, i); + return sm->sq_item(o, i); } } #else - if (is_list || PySequence_Check(o)) { + if (is_list || !PyMapping_Check(o)) { return PySequence_GetItem(o, i); } #endif @@ -11411,7 +14103,7 @@ static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name) { PyObject *result; #if !CYTHON_AVOID_BORROWED_REFS -#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && PY_VERSION_HEX < 0x030d0000 result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash); __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) if (likely(result)) { @@ -11419,6 +14111,14 @@ static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name) } else if (unlikely(PyErr_Occurred())) { return NULL; } +#elif CYTHON_COMPILING_IN_LIMITED_API + if (unlikely(!__pyx_m)) { + return NULL; + } + result = PyObject_GetAttr(__pyx_m, name); + if (likely(result)) { + return result; + } #else result = PyDict_GetItem(__pyx_d, name); __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) @@ -11437,31 +14137,8 @@ static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name) return __Pyx_GetBuiltinName(name); } -/* PyCFunctionFastCall */ -#if CYTHON_FAST_PYCCALL -static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) { - PyCFunctionObject *func = (PyCFunctionObject*)func_obj; - PyCFunction meth = PyCFunction_GET_FUNCTION(func); - PyObject *self = PyCFunction_GET_SELF(func); - int flags = PyCFunction_GET_FLAGS(func); - assert(PyCFunction_Check(func)); - assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS))); - assert(nargs >= 0); - assert(nargs == 0 || args != NULL); - /* _PyCFunction_FastCallDict() must not be called with an exception set, - because it may clear it (directly or indirectly) and so the - caller loses its exception */ - assert(!PyErr_Occurred()); - if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { - return (*((__Pyx_PyCFunctionFastWithKeywords)(void*)meth)) (self, args, nargs, NULL); - } else { - return (*((__Pyx_PyCFunctionFast)(void*)meth)) (self, args, nargs); - } -} -#endif - /* PyFunctionFastCall */ -#if CYTHON_FAST_PYCALL +#if CYTHON_FAST_PYCALL && !CYTHON_VECTORCALL static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, PyObject *globals) { PyFrameObject *f; @@ -11490,7 +14167,6 @@ static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args --tstate->recursion_depth; return result; } -#if 1 || PY_VERSION_HEX < 0x030600B1 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) { PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); PyObject *globals = PyFunction_GET_GLOBALS(func); @@ -11506,9 +14182,15 @@ static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, PyObject *result; assert(kwargs == NULL || PyDict_Check(kwargs)); nk = kwargs ? PyDict_Size(kwargs) : 0; - if (Py_EnterRecursiveCall((char*)" while calling a Python object")) { + #if PY_MAJOR_VERSION < 3 + if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) { + return NULL; + } + #else + if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) { return NULL; } + #endif if ( #if PY_MAJOR_VERSION >= 3 co->co_kwonlyargcount == 0 && @@ -11577,7 +14259,6 @@ static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, return result; } #endif -#endif /* PyObjectCall */ #if CYTHON_COMPILING_IN_CPYTHON @@ -11586,8 +14267,13 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg ternaryfunc call = Py_TYPE(func)->tp_call; if (unlikely(!call)) return PyObject_Call(func, arg, kw); + #if PY_MAJOR_VERSION < 3 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) return NULL; + #else + if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) + return NULL; + #endif result = (*call)(func, arg, kw); Py_LeaveRecursiveCall(); if (unlikely(!result) && unlikely(!PyErr_Occurred())) { @@ -11599,44 +14285,20 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg } #endif -/* PyObjectCall2Args */ -static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) { - PyObject *args, *result = NULL; - #if CYTHON_FAST_PYCALL - if (PyFunction_Check(function)) { - PyObject *args[2] = {arg1, arg2}; - return __Pyx_PyFunction_FastCall(function, args, 2); - } - #endif - #if CYTHON_FAST_PYCCALL - if (__Pyx_PyFastCFunction_Check(function)) { - PyObject *args[2] = {arg1, arg2}; - return __Pyx_PyCFunction_FastCall(function, args, 2); - } - #endif - args = PyTuple_New(2); - if (unlikely(!args)) goto done; - Py_INCREF(arg1); - PyTuple_SET_ITEM(args, 0, arg1); - Py_INCREF(arg2); - PyTuple_SET_ITEM(args, 1, arg2); - Py_INCREF(function); - result = __Pyx_PyObject_Call(function, args, NULL); - Py_DECREF(args); - Py_DECREF(function); -done: - return result; -} - /* PyObjectCallMethO */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { PyObject *self, *result; PyCFunction cfunc; - cfunc = PyCFunction_GET_FUNCTION(func); - self = PyCFunction_GET_SELF(func); + cfunc = __Pyx_CyOrPyCFunction_GET_FUNCTION(func); + self = __Pyx_CyOrPyCFunction_GET_SELF(func); + #if PY_MAJOR_VERSION < 3 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) return NULL; + #else + if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) + return NULL; + #endif result = cfunc(self, arg); Py_LeaveRecursiveCall(); if (unlikely(!result) && unlikely(!PyErr_Occurred())) { @@ -11648,66 +14310,157 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject } #endif -/* PyObjectCallOneArg */ -#if CYTHON_COMPILING_IN_CPYTHON -static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { - PyObject *result; - PyObject *args = PyTuple_New(1); - if (unlikely(!args)) return NULL; - Py_INCREF(arg); - PyTuple_SET_ITEM(args, 0, arg); - result = __Pyx_PyObject_Call(func, args, NULL); - Py_DECREF(args); +/* PyObjectFastCall */ +#if PY_VERSION_HEX < 0x03090000 || CYTHON_COMPILING_IN_LIMITED_API +static PyObject* __Pyx_PyObject_FastCall_fallback(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs) { + PyObject *argstuple; + PyObject *result = 0; + size_t i; + argstuple = PyTuple_New((Py_ssize_t)nargs); + if (unlikely(!argstuple)) return NULL; + for (i = 0; i < nargs; i++) { + Py_INCREF(args[i]); + if (__Pyx_PyTuple_SET_ITEM(argstuple, (Py_ssize_t)i, args[i]) < 0) goto bad; + } + result = __Pyx_PyObject_Call(func, argstuple, kwargs); + bad: + Py_DECREF(argstuple); return result; } -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { -#if CYTHON_FAST_PYCALL - if (PyFunction_Check(func)) { - return __Pyx_PyFunction_FastCall(func, &arg, 1); +#endif +static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t _nargs, PyObject *kwargs) { + Py_ssize_t nargs = __Pyx_PyVectorcall_NARGS(_nargs); +#if CYTHON_COMPILING_IN_CPYTHON + if (nargs == 0 && kwargs == NULL) { + if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_NOARGS)) + return __Pyx_PyObject_CallMethO(func, NULL); + } + else if (nargs == 1 && kwargs == NULL) { + if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_O)) + return __Pyx_PyObject_CallMethO(func, args[0]); + } +#endif + #if PY_VERSION_HEX < 0x030800B1 + #if CYTHON_FAST_PYCCALL + if (PyCFunction_Check(func)) { + if (kwargs) { + return _PyCFunction_FastCallDict(func, args, nargs, kwargs); + } else { + return _PyCFunction_FastCallKeywords(func, args, nargs, NULL); + } + } + #if PY_VERSION_HEX >= 0x030700A1 + if (!kwargs && __Pyx_IS_TYPE(func, &PyMethodDescr_Type)) { + return _PyMethodDescr_FastCallKeywords(func, args, nargs, NULL); + } + #endif + #endif + #if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs); + } + #endif + #endif + if (kwargs == NULL) { + #if CYTHON_VECTORCALL + #if PY_VERSION_HEX < 0x03090000 + vectorcallfunc f = _PyVectorcall_Function(func); + #else + vectorcallfunc f = PyVectorcall_Function(func); + #endif + if (f) { + return f(func, args, (size_t)nargs, NULL); + } + #elif defined(__Pyx_CyFunction_USED) && CYTHON_BACKPORT_VECTORCALL + if (__Pyx_CyFunction_CheckExact(func)) { + __pyx_vectorcallfunc f = __Pyx_CyFunction_func_vectorcall(func); + if (f) return f(func, args, (size_t)nargs, NULL); + } + #endif + } + if (nargs == 0) { + return __Pyx_PyObject_Call(func, __pyx_empty_tuple, kwargs); + } + #if PY_VERSION_HEX >= 0x03090000 && !CYTHON_COMPILING_IN_LIMITED_API + return PyObject_VectorcallDict(func, args, (size_t)nargs, kwargs); + #else + return __Pyx_PyObject_FastCall_fallback(func, args, (size_t)nargs, kwargs); + #endif +} + +/* RaiseUnexpectedTypeError */ +static int +__Pyx_RaiseUnexpectedTypeError(const char *expected, PyObject *obj) +{ + __Pyx_TypeName obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); + PyErr_Format(PyExc_TypeError, "Expected %s, got " __Pyx_FMT_TYPENAME, + expected, obj_type_name); + __Pyx_DECREF_TypeName(obj_type_name); + return 0; +} + +/* UnicodeConcatInPlace */ +# if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 +static int +__Pyx_unicode_modifiable(PyObject *unicode) +{ + if (Py_REFCNT(unicode) != 1) + return 0; + if (!PyUnicode_CheckExact(unicode)) + return 0; + if (PyUnicode_CHECK_INTERNED(unicode)) + return 0; + return 1; +} +static CYTHON_INLINE PyObject *__Pyx_PyUnicode_ConcatInPlaceImpl(PyObject **p_left, PyObject *right + #if CYTHON_REFNANNY + , void* __pyx_refnanny + #endif + ) { + PyObject *left = *p_left; + Py_ssize_t left_len, right_len, new_len; + if (unlikely(__Pyx_PyUnicode_READY(left) == -1)) + return NULL; + if (unlikely(__Pyx_PyUnicode_READY(right) == -1)) + return NULL; + left_len = PyUnicode_GET_LENGTH(left); + if (left_len == 0) { + Py_INCREF(right); + return right; } -#endif - if (likely(PyCFunction_Check(func))) { - if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { - return __Pyx_PyObject_CallMethO(func, arg); -#if CYTHON_FAST_PYCCALL - } else if (__Pyx_PyFastCFunction_Check(func)) { - return __Pyx_PyCFunction_FastCall(func, &arg, 1); -#endif - } + right_len = PyUnicode_GET_LENGTH(right); + if (right_len == 0) { + Py_INCREF(left); + return left; } - return __Pyx__PyObject_CallOneArg(func, arg); -} -#else -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { - PyObject *result; - PyObject *args = PyTuple_Pack(1, arg); - if (unlikely(!args)) return NULL; - result = __Pyx_PyObject_Call(func, args, NULL); - Py_DECREF(args); - return result; -} -#endif - -/* PyObjectCallNoArg */ -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { -#if CYTHON_FAST_PYCALL - if (PyFunction_Check(func)) { - return __Pyx_PyFunction_FastCall(func, NULL, 0); + if (unlikely(left_len > PY_SSIZE_T_MAX - right_len)) { + PyErr_SetString(PyExc_OverflowError, + "strings are too large to concat"); + return NULL; } -#endif -#if defined(__Pyx_CyFunction_USED) && defined(NDEBUG) - if (likely(PyCFunction_Check(func) || __Pyx_CyFunction_Check(func))) -#else - if (likely(PyCFunction_Check(func))) -#endif - { - if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) { - return __Pyx_PyObject_CallMethO(func, NULL); - } + new_len = left_len + right_len; + if (__Pyx_unicode_modifiable(left) + && PyUnicode_CheckExact(right) + && PyUnicode_KIND(right) <= PyUnicode_KIND(left) + && !(PyUnicode_IS_ASCII(left) && !PyUnicode_IS_ASCII(right))) { + int ret; + __Pyx_GIVEREF(*p_left); + ret = PyUnicode_Resize(p_left, new_len); + __Pyx_GOTREF(*p_left); + if (unlikely(ret != 0)) + return NULL; + #if PY_VERSION_HEX >= 0x030d0000 + if (unlikely(PyUnicode_CopyCharacters(*p_left, left_len, right, 0, right_len) < 0)) return NULL; + #else + _PyUnicode_FastCopyCharacters(*p_left, left_len, right, 0, right_len); + #endif + __Pyx_INCREF(*p_left); + __Pyx_GIVEREF(*p_left); + return *p_left; + } else { + return __Pyx_PyUnicode_Concat(left, right); } - return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL); -} + } #endif /* RaiseTooManyValuesToUnpack */ @@ -11725,37 +14478,17 @@ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { /* IterFinish */ static CYTHON_INLINE int __Pyx_IterFinish(void) { -#if CYTHON_FAST_THREAD_STATE - PyThreadState *tstate = __Pyx_PyThreadState_Current; - PyObject* exc_type = tstate->curexc_type; + PyObject* exc_type; + __Pyx_PyThreadState_declare + __Pyx_PyThreadState_assign + exc_type = __Pyx_PyErr_CurrentExceptionType(); if (unlikely(exc_type)) { - if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) { - PyObject *exc_value, *exc_tb; - exc_value = tstate->curexc_value; - exc_tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; - Py_DECREF(exc_type); - Py_XDECREF(exc_value); - Py_XDECREF(exc_tb); - return 0; - } else { - return -1; - } - } - return 0; -#else - if (unlikely(PyErr_Occurred())) { - if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) { - PyErr_Clear(); - return 0; - } else { + if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) return -1; - } + __Pyx_PyErr_Clear(); + return 0; } return 0; -#endif } /* UnpackItemEndCheck */ @@ -11793,12 +14526,12 @@ static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { #endif /* GetTopmostException */ -#if CYTHON_USE_EXC_INFO_STACK +#if CYTHON_USE_EXC_INFO_STACK && CYTHON_FAST_THREAD_STATE static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate) { _PyErr_StackItem *exc_info = tstate->exc_info; - while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) && + while ((exc_info->exc_value == NULL || exc_info->exc_value == Py_None) && exc_info->previous_item != NULL) { exc_info = exc_info->previous_item; @@ -11810,21 +14543,46 @@ __Pyx_PyErr_GetTopmostException(PyThreadState *tstate) /* SaveResetException */ #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { - #if CYTHON_USE_EXC_INFO_STACK + #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 + _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate); + PyObject *exc_value = exc_info->exc_value; + if (exc_value == NULL || exc_value == Py_None) { + *value = NULL; + *type = NULL; + *tb = NULL; + } else { + *value = exc_value; + Py_INCREF(*value); + *type = (PyObject*) Py_TYPE(exc_value); + Py_INCREF(*type); + *tb = PyException_GetTraceback(exc_value); + } + #elif CYTHON_USE_EXC_INFO_STACK _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate); *type = exc_info->exc_type; *value = exc_info->exc_value; *tb = exc_info->exc_traceback; - #else + Py_XINCREF(*type); + Py_XINCREF(*value); + Py_XINCREF(*tb); + #else *type = tstate->exc_type; *value = tstate->exc_value; *tb = tstate->exc_traceback; - #endif Py_XINCREF(*type); Py_XINCREF(*value); Py_XINCREF(*tb); + #endif } static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 + _PyErr_StackItem *exc_info = tstate->exc_info; + PyObject *tmp_value = exc_info->exc_value; + exc_info->exc_value = value; + Py_XDECREF(tmp_value); + Py_XDECREF(type); + Py_XDECREF(tb); + #else PyObject *tmp_type, *tmp_value, *tmp_tb; #if CYTHON_USE_EXC_INFO_STACK _PyErr_StackItem *exc_info = tstate->exc_info; @@ -11845,31 +14603,7 @@ static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); -} -#endif - -/* PyErrExceptionMatches */ -#if CYTHON_FAST_THREAD_STATE -static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { - Py_ssize_t i, n; - n = PyTuple_GET_SIZE(tuple); -#if PY_MAJOR_VERSION >= 3 - for (i=0; icurexc_type; - if (exc_type == err) return 1; - if (unlikely(!exc_type)) return 0; - if (unlikely(PyTuple_Check(err))) - return __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err); - return __Pyx_PyErr_GivenExceptionMatches(exc_type, err); + #endif } #endif @@ -11880,20 +14614,32 @@ static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) #endif { - PyObject *local_type, *local_value, *local_tb; + PyObject *local_type = NULL, *local_value, *local_tb = NULL; #if CYTHON_FAST_THREAD_STATE PyObject *tmp_type, *tmp_value, *tmp_tb; + #if PY_VERSION_HEX >= 0x030C00A6 + local_value = tstate->current_exception; + tstate->current_exception = 0; + if (likely(local_value)) { + local_type = (PyObject*) Py_TYPE(local_value); + Py_INCREF(local_type); + local_tb = PyException_GetTraceback(local_value); + } + #else local_type = tstate->curexc_type; local_value = tstate->curexc_value; local_tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; + #endif #else PyErr_Fetch(&local_type, &local_value, &local_tb); #endif PyErr_NormalizeException(&local_type, &local_value, &local_tb); -#if CYTHON_FAST_THREAD_STATE +#if CYTHON_FAST_THREAD_STATE && PY_VERSION_HEX >= 0x030C00A6 + if (unlikely(tstate->current_exception)) +#elif CYTHON_FAST_THREAD_STATE if (unlikely(tstate->curexc_type)) #else if (unlikely(PyErr_Occurred())) @@ -11915,12 +14661,21 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) #if CYTHON_USE_EXC_INFO_STACK { _PyErr_StackItem *exc_info = tstate->exc_info; + #if PY_VERSION_HEX >= 0x030B00a4 + tmp_value = exc_info->exc_value; + exc_info->exc_value = local_value; + tmp_type = NULL; + tmp_tb = NULL; + Py_XDECREF(local_type); + Py_XDECREF(local_tb); + #else tmp_type = exc_info->exc_type; tmp_value = exc_info->exc_value; tmp_tb = exc_info->exc_traceback; exc_info->exc_type = local_type; exc_info->exc_value = local_value; exc_info->exc_traceback = local_tb; + #endif } #else tmp_type = tstate->exc_type; @@ -11947,10 +14702,23 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) return -1; } +/* PyObjectCall2Args */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) { + PyObject *args[3] = {NULL, arg1, arg2}; + return __Pyx_PyObject_FastCall(function, args+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); +} + +/* PyObjectCallOneArg */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { + PyObject *args[2] = {NULL, arg}; + return __Pyx_PyObject_FastCall(func, args+1, 1 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); +} + /* PyObjectGetMethod */ static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) { PyObject *attr; #if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP + __Pyx_TypeName type_name; PyTypeObject *tp = Py_TYPE(obj); PyObject *descr; descrgetfunc f = NULL; @@ -11967,11 +14735,13 @@ static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **me descr = _PyType_Lookup(tp, name); if (likely(descr != NULL)) { Py_INCREF(descr); -#if PY_MAJOR_VERSION >= 3 +#if defined(Py_TPFLAGS_METHOD_DESCRIPTOR) && Py_TPFLAGS_METHOD_DESCRIPTOR + if (__Pyx_PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_METHOD_DESCRIPTOR)) +#elif PY_MAJOR_VERSION >= 3 #ifdef __Pyx_CyFunction_USED - if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr))) + if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr))) #else - if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type))) + if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type))) #endif #else #ifdef __Pyx_CyFunction_USED @@ -12012,18 +14782,20 @@ static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **me Py_DECREF(descr); goto try_unpack; } - if (descr != NULL) { + if (likely(descr != NULL)) { *method = descr; return 0; } + type_name = __Pyx_PyType_GetName(tp); PyErr_Format(PyExc_AttributeError, #if PY_MAJOR_VERSION >= 3 - "'%.50s' object has no attribute '%U'", - tp->tp_name, name); + "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", + type_name, name); #else - "'%.50s' object has no attribute '%.400s'", - tp->tp_name, PyString_AS_STRING(name)); + "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'", + type_name, PyString_AS_STRING(name)); #endif + __Pyx_DECREF_TypeName(type_name); return 0; #else attr = __Pyx_PyObject_GetAttrStr(obj, name); @@ -12044,12 +14816,21 @@ static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **me } /* PyObjectCallMethod1 */ +#if !(CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2) static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) { PyObject *result = __Pyx_PyObject_CallOneArg(method, arg); Py_DECREF(method); return result; } +#endif static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) { +#if CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2 + PyObject *args[2] = {obj, arg}; + (void) __Pyx_PyObject_GetMethod; + (void) __Pyx_PyObject_CallOneArg; + (void) __Pyx_PyObject_Call2Args; + return PyObject_VectorcallMethod(method_name, args, 2 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL); +#else PyObject *method = NULL, *result; int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); if (likely(is_method)) { @@ -12059,6 +14840,7 @@ static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name } if (unlikely(!method)) return NULL; return __Pyx__PyObject_CallMethod1(method, arg); +#endif } /* append */ @@ -12077,7 +14859,7 @@ static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) { /* set_iter */ static CYTHON_INLINE PyObject* __Pyx_set_iterator(PyObject* iterable, int is_set, Py_ssize_t* p_orig_length, int* p_source_is_set) { -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 is_set = is_set || likely(PySet_CheckExact(iterable) || PyFrozenSet_CheckExact(iterable)); *p_source_is_set = is_set; if (likely(is_set)) { @@ -12086,7 +14868,7 @@ static CYTHON_INLINE PyObject* __Pyx_set_iterator(PyObject* iterable, int is_set return iterable; } #else - (void)is_set; + CYTHON_UNUSED_VAR(is_set); *p_source_is_set = 0; #endif *p_orig_length = 0; @@ -12096,16 +14878,16 @@ static CYTHON_INLINE int __Pyx_set_iter_next( PyObject* iter_obj, Py_ssize_t orig_length, Py_ssize_t* ppos, PyObject **value, int source_is_set) { - if (!CYTHON_COMPILING_IN_CPYTHON || unlikely(!source_is_set)) { + if (!CYTHON_COMPILING_IN_CPYTHON || PY_VERSION_HEX >= 0x030d0000 || unlikely(!source_is_set)) { *value = PyIter_Next(iter_obj); if (unlikely(!*value)) { return __Pyx_IterFinish(); } - (void)orig_length; - (void)ppos; + CYTHON_UNUSED_VAR(orig_length); + CYTHON_UNUSED_VAR(ppos); return 1; } -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 if (unlikely(PySet_GET_SIZE(iter_obj) != orig_length)) { PyErr_SetString( PyExc_RuntimeError, @@ -12125,6 +14907,12 @@ static CYTHON_INLINE int __Pyx_set_iter_next( return 0; } +/* PyObjectCallNoArg */ +static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { + PyObject *arg[2] = {NULL, NULL}; + return __Pyx_PyObject_FastCall(func, arg + 1, 0 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); +} + /* PyObjectCallMethod0 */ static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) { PyObject *method = NULL, *result = NULL; @@ -12190,7 +14978,7 @@ static int __Pyx_unpack_tuple2_generic(PyObject* tuple, PyObject** pvalue1, PyOb iter = PyObject_GetIter(tuple); if (unlikely(!iter)) goto bad; if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; } - iternext = Py_TYPE(iter)->tp_iternext; + iternext = __Pyx_PyObject_GetIterNextFunc(iter); value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; } value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; } if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad; @@ -12210,6 +14998,9 @@ static int __Pyx_unpack_tuple2_generic(PyObject* tuple, PyObject** pvalue1, PyOb } /* dict_iter */ +#if CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 +#include +#endif static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name, Py_ssize_t* p_orig_length, int* p_source_is_dict) { is_dict = is_dict || likely(PyDict_CheckExact(iterable)); @@ -12322,56 +15113,281 @@ static CYTHON_INLINE int __Pyx_dict_iter_next( return 1; } +/* FixUpExtensionType */ +#if CYTHON_USE_TYPE_SPECS +static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type) { +#if PY_VERSION_HEX > 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API + CYTHON_UNUSED_VAR(spec); + CYTHON_UNUSED_VAR(type); +#else + const PyType_Slot *slot = spec->slots; + while (slot && slot->slot && slot->slot != Py_tp_members) + slot++; + if (slot && slot->slot == Py_tp_members) { + int changed = 0; +#if !(PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON) + const +#endif + PyMemberDef *memb = (PyMemberDef*) slot->pfunc; + while (memb && memb->name) { + if (memb->name[0] == '_' && memb->name[1] == '_') { +#if PY_VERSION_HEX < 0x030900b1 + if (strcmp(memb->name, "__weaklistoffset__") == 0) { + assert(memb->type == T_PYSSIZET); + assert(memb->flags == READONLY); + type->tp_weaklistoffset = memb->offset; + changed = 1; + } + else if (strcmp(memb->name, "__dictoffset__") == 0) { + assert(memb->type == T_PYSSIZET); + assert(memb->flags == READONLY); + type->tp_dictoffset = memb->offset; + changed = 1; + } +#if CYTHON_METH_FASTCALL + else if (strcmp(memb->name, "__vectorcalloffset__") == 0) { + assert(memb->type == T_PYSSIZET); + assert(memb->flags == READONLY); +#if PY_VERSION_HEX >= 0x030800b4 + type->tp_vectorcall_offset = memb->offset; +#else + type->tp_print = (printfunc) memb->offset; +#endif + changed = 1; + } +#endif +#else + if ((0)); +#endif +#if PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON + else if (strcmp(memb->name, "__module__") == 0) { + PyObject *descr; + assert(memb->type == T_OBJECT); + assert(memb->flags == 0 || memb->flags == READONLY); + descr = PyDescr_NewMember(type, memb); + if (unlikely(!descr)) + return -1; + if (unlikely(PyDict_SetItem(type->tp_dict, PyDescr_NAME(descr), descr) < 0)) { + Py_DECREF(descr); + return -1; + } + Py_DECREF(descr); + changed = 1; + } +#endif + } + memb++; + } + if (changed) + PyType_Modified(type); + } +#endif + return 0; +} +#endif + +/* FetchSharedCythonModule */ +static PyObject *__Pyx_FetchSharedCythonABIModule(void) { + return __Pyx_PyImport_AddModuleRef((char*) __PYX_ABI_MODULE_NAME); +} + /* FetchCommonType */ +static int __Pyx_VerifyCachedType(PyObject *cached_type, + const char *name, + Py_ssize_t basicsize, + Py_ssize_t expected_basicsize) { + if (!PyType_Check(cached_type)) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s is not a type object", name); + return -1; + } + if (basicsize != expected_basicsize) { + PyErr_Format(PyExc_TypeError, + "Shared Cython type %.200s has the wrong size, try recompiling", + name); + return -1; + } + return 0; +} +#if !CYTHON_USE_TYPE_SPECS static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { - PyObject* fake_module; - PyTypeObject* cached_type = NULL; - fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI); - if (!fake_module) return NULL; - Py_INCREF(fake_module); - cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name); + PyObject* abi_module; + const char* object_name; + PyTypeObject *cached_type = NULL; + abi_module = __Pyx_FetchSharedCythonABIModule(); + if (!abi_module) return NULL; + object_name = strrchr(type->tp_name, '.'); + object_name = object_name ? object_name+1 : type->tp_name; + cached_type = (PyTypeObject*) PyObject_GetAttrString(abi_module, object_name); if (cached_type) { - if (!PyType_Check((PyObject*)cached_type)) { - PyErr_Format(PyExc_TypeError, - "Shared Cython type %.200s is not a type object", - type->tp_name); + if (__Pyx_VerifyCachedType( + (PyObject *)cached_type, + object_name, + cached_type->tp_basicsize, + type->tp_basicsize) < 0) { goto bad; } - if (cached_type->tp_basicsize != type->tp_basicsize) { - PyErr_Format(PyExc_TypeError, - "Shared Cython type %.200s has the wrong size, try recompiling", - type->tp_name); + goto done; + } + if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; + PyErr_Clear(); + if (PyType_Ready(type) < 0) goto bad; + if (PyObject_SetAttrString(abi_module, object_name, (PyObject *)type) < 0) + goto bad; + Py_INCREF(type); + cached_type = type; +done: + Py_DECREF(abi_module); + return cached_type; +bad: + Py_XDECREF(cached_type); + cached_type = NULL; + goto done; +} +#else +static PyTypeObject *__Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases) { + PyObject *abi_module, *cached_type = NULL; + const char* object_name = strrchr(spec->name, '.'); + object_name = object_name ? object_name+1 : spec->name; + abi_module = __Pyx_FetchSharedCythonABIModule(); + if (!abi_module) return NULL; + cached_type = PyObject_GetAttrString(abi_module, object_name); + if (cached_type) { + Py_ssize_t basicsize; +#if CYTHON_COMPILING_IN_LIMITED_API + PyObject *py_basicsize; + py_basicsize = PyObject_GetAttrString(cached_type, "__basicsize__"); + if (unlikely(!py_basicsize)) goto bad; + basicsize = PyLong_AsSsize_t(py_basicsize); + Py_DECREF(py_basicsize); + py_basicsize = 0; + if (unlikely(basicsize == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; +#else + basicsize = likely(PyType_Check(cached_type)) ? ((PyTypeObject*) cached_type)->tp_basicsize : -1; +#endif + if (__Pyx_VerifyCachedType( + cached_type, + object_name, + basicsize, + spec->basicsize) < 0) { goto bad; } - } else { - if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; - PyErr_Clear(); - if (PyType_Ready(type) < 0) goto bad; - if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0) - goto bad; - Py_INCREF(type); - cached_type = type; + goto done; } + if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; + PyErr_Clear(); + CYTHON_UNUSED_VAR(module); + cached_type = __Pyx_PyType_FromModuleAndSpec(abi_module, spec, bases); + if (unlikely(!cached_type)) goto bad; + if (unlikely(__Pyx_fix_up_extension_type_from_spec(spec, (PyTypeObject *) cached_type) < 0)) goto bad; + if (PyObject_SetAttrString(abi_module, object_name, cached_type) < 0) goto bad; done: - Py_DECREF(fake_module); - return cached_type; + Py_DECREF(abi_module); + assert(cached_type == NULL || PyType_Check(cached_type)); + return (PyTypeObject *) cached_type; bad: Py_XDECREF(cached_type); cached_type = NULL; goto done; } +#endif + +/* PyVectorcallFastCallDict */ +#if CYTHON_METH_FASTCALL +static PyObject *__Pyx_PyVectorcall_FastCallDict_kw(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) +{ + PyObject *res = NULL; + PyObject *kwnames; + PyObject **newargs; + PyObject **kwvalues; + Py_ssize_t i, pos; + size_t j; + PyObject *key, *value; + unsigned long keys_are_strings; + Py_ssize_t nkw = PyDict_GET_SIZE(kw); + newargs = (PyObject **)PyMem_Malloc((nargs + (size_t)nkw) * sizeof(args[0])); + if (unlikely(newargs == NULL)) { + PyErr_NoMemory(); + return NULL; + } + for (j = 0; j < nargs; j++) newargs[j] = args[j]; + kwnames = PyTuple_New(nkw); + if (unlikely(kwnames == NULL)) { + PyMem_Free(newargs); + return NULL; + } + kwvalues = newargs + nargs; + pos = i = 0; + keys_are_strings = Py_TPFLAGS_UNICODE_SUBCLASS; + while (PyDict_Next(kw, &pos, &key, &value)) { + keys_are_strings &= Py_TYPE(key)->tp_flags; + Py_INCREF(key); + Py_INCREF(value); + PyTuple_SET_ITEM(kwnames, i, key); + kwvalues[i] = value; + i++; + } + if (unlikely(!keys_are_strings)) { + PyErr_SetString(PyExc_TypeError, "keywords must be strings"); + goto cleanup; + } + res = vc(func, newargs, nargs, kwnames); +cleanup: + Py_DECREF(kwnames); + for (i = 0; i < nkw; i++) + Py_DECREF(kwvalues[i]); + PyMem_Free(newargs); + return res; +} +static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) +{ + if (likely(kw == NULL) || PyDict_GET_SIZE(kw) == 0) { + return vc(func, args, nargs, NULL); + } + return __Pyx_PyVectorcall_FastCallDict_kw(func, vc, args, nargs, kw); +} +#endif /* CythonFunctionShared */ -#include +#if CYTHON_COMPILING_IN_LIMITED_API +static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { + if (__Pyx_CyFunction_Check(func)) { + return PyCFunction_GetFunction(((__pyx_CyFunctionObject*)func)->func) == (PyCFunction) cfunc; + } else if (PyCFunction_Check(func)) { + return PyCFunction_GetFunction(func) == (PyCFunction) cfunc; + } + return 0; +} +#else +static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { + return __Pyx_CyOrPyCFunction_Check(func) && __Pyx_CyOrPyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; +} +#endif +static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj) { +#if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API + __Pyx_Py_XDECREF_SET( + __Pyx_CyFunction_GetClassObj(f), + ((classobj) ? __Pyx_NewRef(classobj) : NULL)); +#else + __Pyx_Py_XDECREF_SET( + ((PyCMethodObject *) (f))->mm_class, + (PyTypeObject*)((classobj) ? __Pyx_NewRef(classobj) : NULL)); +#endif +} static PyObject * -__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure) +__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, void *closure) { + CYTHON_UNUSED_VAR(closure); if (unlikely(op->func_doc == NULL)) { - if (op->func.m_ml->ml_doc) { +#if CYTHON_COMPILING_IN_LIMITED_API + op->func_doc = PyObject_GetAttrString(op->func, "__doc__"); + if (unlikely(!op->func_doc)) return NULL; +#else + if (((PyCFunctionObject*)op)->m_ml->ml_doc) { #if PY_MAJOR_VERSION >= 3 - op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc); + op->func_doc = PyUnicode_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); #else - op->func_doc = PyString_FromString(op->func.m_ml->ml_doc); + op->func_doc = PyString_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); #endif if (unlikely(op->func_doc == NULL)) return NULL; @@ -12379,30 +15395,33 @@ __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure Py_INCREF(Py_None); return Py_None; } +#endif } Py_INCREF(op->func_doc); return op->func_doc; } static int -__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context) +__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, void *context) { - PyObject *tmp = op->func_doc; + CYTHON_UNUSED_VAR(context); if (value == NULL) { value = Py_None; } Py_INCREF(value); - op->func_doc = value; - Py_XDECREF(tmp); + __Pyx_Py_XDECREF_SET(op->func_doc, value); return 0; } static PyObject * -__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) +__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, void *context) { + CYTHON_UNUSED_VAR(context); if (unlikely(op->func_name == NULL)) { -#if PY_MAJOR_VERSION >= 3 - op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name); +#if CYTHON_COMPILING_IN_LIMITED_API + op->func_name = PyObject_GetAttrString(op->func, "__name__"); +#elif PY_MAJOR_VERSION >= 3 + op->func_name = PyUnicode_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); #else - op->func_name = PyString_InternFromString(op->func.m_ml->ml_name); + op->func_name = PyString_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); #endif if (unlikely(op->func_name == NULL)) return NULL; @@ -12411,9 +15430,9 @@ __Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *contex return op->func_name; } static int -__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context) +__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, void *context) { - PyObject *tmp; + CYTHON_UNUSED_VAR(context); #if PY_MAJOR_VERSION >= 3 if (unlikely(value == NULL || !PyUnicode_Check(value))) #else @@ -12424,22 +15443,21 @@ __Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UN "__name__ must be set to a string object"); return -1; } - tmp = op->func_name; Py_INCREF(value); - op->func_name = value; - Py_XDECREF(tmp); + __Pyx_Py_XDECREF_SET(op->func_name, value); return 0; } static PyObject * -__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) +__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, void *context) { + CYTHON_UNUSED_VAR(context); Py_INCREF(op->func_qualname); return op->func_qualname; } static int -__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context) +__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, void *context) { - PyObject *tmp; + CYTHON_UNUSED_VAR(context); #if PY_MAJOR_VERSION >= 3 if (unlikely(value == NULL || !PyUnicode_Check(value))) #else @@ -12450,25 +15468,14 @@ __Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, CYTHO "__qualname__ must be set to a string object"); return -1; } - tmp = op->func_qualname; Py_INCREF(value); - op->func_qualname = value; - Py_XDECREF(tmp); + __Pyx_Py_XDECREF_SET(op->func_qualname, value); return 0; } static PyObject * -__Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure) -{ - PyObject *self; - self = m->func_closure; - if (self == NULL) - self = Py_None; - Py_INCREF(self); - return self; -} -static PyObject * -__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) +__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, void *context) { + CYTHON_UNUSED_VAR(context); if (unlikely(op->func_dict == NULL)) { op->func_dict = PyDict_New(); if (unlikely(op->func_dict == NULL)) @@ -12478,9 +15485,9 @@ __Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *contex return op->func_dict; } static int -__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context) +__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, void *context) { - PyObject *tmp; + CYTHON_UNUSED_VAR(context); if (unlikely(value == NULL)) { PyErr_SetString(PyExc_TypeError, "function's dictionary may not be deleted"); @@ -12491,28 +15498,30 @@ __Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UN "setting function's dictionary to a non-dict"); return -1; } - tmp = op->func_dict; Py_INCREF(value); - op->func_dict = value; - Py_XDECREF(tmp); + __Pyx_Py_XDECREF_SET(op->func_dict, value); return 0; } static PyObject * -__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) +__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, void *context) { + CYTHON_UNUSED_VAR(context); Py_INCREF(op->func_globals); return op->func_globals; } static PyObject * -__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) +__Pyx_CyFunction_get_closure(__pyx_CyFunctionObject *op, void *context) { + CYTHON_UNUSED_VAR(op); + CYTHON_UNUSED_VAR(context); Py_INCREF(Py_None); return Py_None; } static PyObject * -__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) +__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, void *context) { PyObject* result = (op->func_code) ? op->func_code : Py_None; + CYTHON_UNUSED_VAR(context); Py_INCREF(result); return result; } @@ -12528,10 +15537,10 @@ __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); Py_INCREF(op->defaults_kwdict); #else - op->defaults_tuple = PySequence_ITEM(res, 0); + op->defaults_tuple = __Pyx_PySequence_ITEM(res, 0); if (unlikely(!op->defaults_tuple)) result = -1; else { - op->defaults_kwdict = PySequence_ITEM(res, 1); + op->defaults_kwdict = __Pyx_PySequence_ITEM(res, 1); if (unlikely(!op->defaults_kwdict)) result = -1; } #endif @@ -12539,27 +15548,28 @@ __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { return result; } static int -__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, CYTHON_UNUSED void *context) { - PyObject* tmp; +__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { + CYTHON_UNUSED_VAR(context); if (!value) { value = Py_None; - } else if (value != Py_None && !PyTuple_Check(value)) { + } else if (unlikely(value != Py_None && !PyTuple_Check(value))) { PyErr_SetString(PyExc_TypeError, "__defaults__ must be set to a tuple object"); return -1; } + PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__defaults__ will not " + "currently affect the values used in function calls", 1); Py_INCREF(value); - tmp = op->defaults_tuple; - op->defaults_tuple = value; - Py_XDECREF(tmp); + __Pyx_Py_XDECREF_SET(op->defaults_tuple, value); return 0; } static PyObject * -__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) { +__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, void *context) { PyObject* result = op->defaults_tuple; + CYTHON_UNUSED_VAR(context); if (unlikely(!result)) { if (op->defaults_getter) { - if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; result = op->defaults_tuple; } else { result = Py_None; @@ -12569,27 +15579,28 @@ __Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *co return result; } static int -__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, CYTHON_UNUSED void *context) { - PyObject* tmp; +__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { + CYTHON_UNUSED_VAR(context); if (!value) { value = Py_None; - } else if (value != Py_None && !PyDict_Check(value)) { + } else if (unlikely(value != Py_None && !PyDict_Check(value))) { PyErr_SetString(PyExc_TypeError, "__kwdefaults__ must be set to a dict object"); return -1; } + PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__kwdefaults__ will not " + "currently affect the values used in function calls", 1); Py_INCREF(value); - tmp = op->defaults_kwdict; - op->defaults_kwdict = value; - Py_XDECREF(tmp); + __Pyx_Py_XDECREF_SET(op->defaults_kwdict, value); return 0; } static PyObject * -__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) { +__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, void *context) { PyObject* result = op->defaults_kwdict; + CYTHON_UNUSED_VAR(context); if (unlikely(!result)) { if (op->defaults_getter) { - if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL; + if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; result = op->defaults_kwdict; } else { result = Py_None; @@ -12599,24 +15610,23 @@ __Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, CYTHON_UNUSED void * return result; } static int -__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, CYTHON_UNUSED void *context) { - PyObject* tmp; +__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, void *context) { + CYTHON_UNUSED_VAR(context); if (!value || value == Py_None) { value = NULL; - } else if (!PyDict_Check(value)) { + } else if (unlikely(!PyDict_Check(value))) { PyErr_SetString(PyExc_TypeError, "__annotations__ must be set to a dict object"); return -1; } Py_XINCREF(value); - tmp = op->func_annotations; - op->func_annotations = value; - Py_XDECREF(tmp); + __Pyx_Py_XDECREF_SET(op->func_annotations, value); return 0; } static PyObject * -__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) { +__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, void *context) { PyObject* result = op->func_annotations; + CYTHON_UNUSED_VAR(context); if (unlikely(!result)) { result = PyDict_New(); if (unlikely(!result)) return NULL; @@ -12625,13 +15635,62 @@ __Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, CYTHON_UNUSED void Py_INCREF(result); return result; } +static PyObject * +__Pyx_CyFunction_get_is_coroutine(__pyx_CyFunctionObject *op, void *context) { + int is_coroutine; + CYTHON_UNUSED_VAR(context); + if (op->func_is_coroutine) { + return __Pyx_NewRef(op->func_is_coroutine); + } + is_coroutine = op->flags & __Pyx_CYFUNCTION_COROUTINE; +#if PY_VERSION_HEX >= 0x03050000 + if (is_coroutine) { + PyObject *module, *fromlist, *marker = __pyx_n_s_is_coroutine; + fromlist = PyList_New(1); + if (unlikely(!fromlist)) return NULL; + Py_INCREF(marker); +#if CYTHON_ASSUME_SAFE_MACROS + PyList_SET_ITEM(fromlist, 0, marker); +#else + if (unlikely(PyList_SetItem(fromlist, 0, marker) < 0)) { + Py_DECREF(marker); + Py_DECREF(fromlist); + return NULL; + } +#endif + module = PyImport_ImportModuleLevelObject(__pyx_n_s_asyncio_coroutines, NULL, NULL, fromlist, 0); + Py_DECREF(fromlist); + if (unlikely(!module)) goto ignore; + op->func_is_coroutine = __Pyx_PyObject_GetAttrStr(module, marker); + Py_DECREF(module); + if (likely(op->func_is_coroutine)) { + return __Pyx_NewRef(op->func_is_coroutine); + } +ignore: + PyErr_Clear(); + } +#endif + op->func_is_coroutine = __Pyx_PyBool_FromLong(is_coroutine); + return __Pyx_NewRef(op->func_is_coroutine); +} +#if CYTHON_COMPILING_IN_LIMITED_API +static PyObject * +__Pyx_CyFunction_get_module(__pyx_CyFunctionObject *op, void *context) { + CYTHON_UNUSED_VAR(context); + return PyObject_GetAttrString(op->func, "__module__"); +} +static int +__Pyx_CyFunction_set_module(__pyx_CyFunctionObject *op, PyObject* value, void *context) { + CYTHON_UNUSED_VAR(context); + return PyObject_SetAttrString(op->func, "__module__", value); +} +#endif static PyGetSetDef __pyx_CyFunction_getsets[] = { {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, - {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0}, {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, @@ -12644,49 +15703,88 @@ static PyGetSetDef __pyx_CyFunction_getsets[] = { {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, + {(char *) "_is_coroutine", (getter)__Pyx_CyFunction_get_is_coroutine, 0, 0, 0}, +#if CYTHON_COMPILING_IN_LIMITED_API + {"__module__", (getter)__Pyx_CyFunction_get_module, (setter)__Pyx_CyFunction_set_module, 0, 0}, +#endif {0, 0, 0, 0, 0} }; static PyMemberDef __pyx_CyFunction_members[] = { - {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), PY_WRITE_RESTRICTED, 0}, +#if !CYTHON_COMPILING_IN_LIMITED_API + {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), 0, 0}, +#endif +#if CYTHON_USE_TYPE_SPECS + {(char *) "__dictoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_dict), READONLY, 0}, +#if CYTHON_METH_FASTCALL +#if CYTHON_BACKPORT_VECTORCALL + {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_vectorcall), READONLY, 0}, +#else +#if !CYTHON_COMPILING_IN_LIMITED_API + {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(PyCFunctionObject, vectorcall), READONLY, 0}, +#endif +#endif +#endif +#if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API + {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_weakreflist), READONLY, 0}, +#else + {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(PyCFunctionObject, m_weakreflist), READONLY, 0}, +#endif +#endif {0, 0, 0, 0, 0} }; static PyObject * -__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args) +__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, PyObject *args) { + CYTHON_UNUSED_VAR(args); #if PY_MAJOR_VERSION >= 3 Py_INCREF(m->func_qualname); return m->func_qualname; #else - return PyString_FromString(m->func.m_ml->ml_name); + return PyString_FromString(((PyCFunctionObject*)m)->m_ml->ml_name); #endif } static PyMethodDef __pyx_CyFunction_methods[] = { {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, {0, 0, 0, 0} }; -#if PY_VERSION_HEX < 0x030500A0 +#if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) #else -#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist) +#define __Pyx_CyFunction_weakreflist(cyfunc) (((PyCFunctionObject*)cyfunc)->m_weakreflist) #endif static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef *ml, int flags, PyObject* qualname, PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { +#if !CYTHON_COMPILING_IN_LIMITED_API + PyCFunctionObject *cf = (PyCFunctionObject*) op; +#endif if (unlikely(op == NULL)) return NULL; +#if CYTHON_COMPILING_IN_LIMITED_API + op->func = PyCFunction_NewEx(ml, (PyObject*)op, module); + if (unlikely(!op->func)) return NULL; +#endif op->flags = flags; __Pyx_CyFunction_weakreflist(op) = NULL; - op->func.m_ml = ml; - op->func.m_self = (PyObject *) op; +#if !CYTHON_COMPILING_IN_LIMITED_API + cf->m_ml = ml; + cf->m_self = (PyObject *) op; +#endif Py_XINCREF(closure); op->func_closure = closure; +#if !CYTHON_COMPILING_IN_LIMITED_API Py_XINCREF(module); - op->func.m_module = module; + cf->m_module = module; +#endif op->func_dict = NULL; op->func_name = NULL; Py_INCREF(qualname); op->func_qualname = qualname; op->func_doc = NULL; +#if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API op->func_classobj = NULL; +#else + ((PyCMethodObject*)op)->mm_class = NULL; +#endif op->func_globals = globals; Py_INCREF(op->func_globals); Py_XINCREF(code); @@ -12698,23 +15796,62 @@ static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef * op->defaults_kwdict = NULL; op->defaults_getter = NULL; op->func_annotations = NULL; + op->func_is_coroutine = NULL; +#if CYTHON_METH_FASTCALL + switch (ml->ml_flags & (METH_VARARGS | METH_FASTCALL | METH_NOARGS | METH_O | METH_KEYWORDS | METH_METHOD)) { + case METH_NOARGS: + __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_NOARGS; + break; + case METH_O: + __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_O; + break; + case METH_METHOD | METH_FASTCALL | METH_KEYWORDS: + __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD; + break; + case METH_FASTCALL | METH_KEYWORDS: + __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS; + break; + case METH_VARARGS | METH_KEYWORDS: + __Pyx_CyFunction_func_vectorcall(op) = NULL; + break; + default: + PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); + Py_DECREF(op); + return NULL; + } +#endif return (PyObject *) op; } static int __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) { Py_CLEAR(m->func_closure); - Py_CLEAR(m->func.m_module); +#if CYTHON_COMPILING_IN_LIMITED_API + Py_CLEAR(m->func); +#else + Py_CLEAR(((PyCFunctionObject*)m)->m_module); +#endif Py_CLEAR(m->func_dict); Py_CLEAR(m->func_name); Py_CLEAR(m->func_qualname); Py_CLEAR(m->func_doc); Py_CLEAR(m->func_globals); Py_CLEAR(m->func_code); - Py_CLEAR(m->func_classobj); +#if !CYTHON_COMPILING_IN_LIMITED_API +#if PY_VERSION_HEX < 0x030900B1 + Py_CLEAR(__Pyx_CyFunction_GetClassObj(m)); +#else + { + PyObject *cls = (PyObject*) ((PyCMethodObject *) (m))->mm_class; + ((PyCMethodObject *) (m))->mm_class = NULL; + Py_XDECREF(cls); + } +#endif +#endif Py_CLEAR(m->defaults_tuple); Py_CLEAR(m->defaults_kwdict); Py_CLEAR(m->func_annotations); + Py_CLEAR(m->func_is_coroutine); if (m->defaults) { PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); int i; @@ -12730,7 +15867,7 @@ static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m) if (__Pyx_CyFunction_weakreflist(m) != NULL) PyObject_ClearWeakRefs((PyObject *) m); __Pyx_CyFunction_clear(m); - PyObject_GC_Del(m); + __Pyx_PyHeapTypeObject_GC_Del(m); } static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) { @@ -12740,16 +15877,23 @@ static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) { Py_VISIT(m->func_closure); - Py_VISIT(m->func.m_module); +#if CYTHON_COMPILING_IN_LIMITED_API + Py_VISIT(m->func); +#else + Py_VISIT(((PyCFunctionObject*)m)->m_module); +#endif Py_VISIT(m->func_dict); Py_VISIT(m->func_name); Py_VISIT(m->func_qualname); Py_VISIT(m->func_doc); Py_VISIT(m->func_globals); Py_VISIT(m->func_code); - Py_VISIT(m->func_classobj); +#if !CYTHON_COMPILING_IN_LIMITED_API + Py_VISIT(__Pyx_CyFunction_GetClassObj(m)); +#endif Py_VISIT(m->defaults_tuple); Py_VISIT(m->defaults_kwdict); + Py_VISIT(m->func_is_coroutine); if (m->defaults) { PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); int i; @@ -12758,24 +15902,6 @@ static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, } return 0; } -static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type) -{ -#if PY_MAJOR_VERSION < 3 - __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; - if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) { - Py_INCREF(func); - return func; - } - if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) { - if (type == NULL) - type = (PyObject *)(Py_TYPE(obj)); - return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type))); - } - if (obj == Py_None) - obj = NULL; -#endif - return __Pyx_PyMethod_New(func, obj, type); -} static PyObject* __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) { @@ -12788,10 +15914,22 @@ __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) #endif } static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { +#if CYTHON_COMPILING_IN_LIMITED_API + PyObject *f = ((__pyx_CyFunctionObject*)func)->func; + PyObject *py_name = NULL; + PyCFunction meth; + int flags; + meth = PyCFunction_GetFunction(f); + if (unlikely(!meth)) return NULL; + flags = PyCFunction_GetFlags(f); + if (unlikely(flags < 0)) return NULL; +#else PyCFunctionObject* f = (PyCFunctionObject*)func; PyCFunction meth = f->m_ml->ml_meth; + int flags = f->m_ml->ml_flags; +#endif Py_ssize_t size; - switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { + switch (flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { case METH_VARARGS: if (likely(kw == NULL || PyDict_Size(kw) == 0)) return (*meth)(self, arg); @@ -12800,24 +15938,43 @@ static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, Py return (*(PyCFunctionWithKeywords)(void*)meth)(self, arg, kw); case METH_NOARGS: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { +#if CYTHON_ASSUME_SAFE_MACROS size = PyTuple_GET_SIZE(arg); +#else + size = PyTuple_Size(arg); + if (unlikely(size < 0)) return NULL; +#endif if (likely(size == 0)) return (*meth)(self, NULL); +#if CYTHON_COMPILING_IN_LIMITED_API + py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); + if (!py_name) return NULL; + PyErr_Format(PyExc_TypeError, + "%.200S() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", + py_name, size); + Py_DECREF(py_name); +#else PyErr_Format(PyExc_TypeError, "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", f->m_ml->ml_name, size); +#endif return NULL; } break; case METH_O: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { +#if CYTHON_ASSUME_SAFE_MACROS size = PyTuple_GET_SIZE(arg); +#else + size = PyTuple_Size(arg); + if (unlikely(size < 0)) return NULL; +#endif if (likely(size == 1)) { PyObject *result, *arg0; #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS arg0 = PyTuple_GET_ITEM(arg, 0); #else - arg0 = PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL; + arg0 = __Pyx_PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL; #endif result = (*meth)(self, arg0); #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) @@ -12825,33 +15982,72 @@ static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, Py #endif return result; } +#if CYTHON_COMPILING_IN_LIMITED_API + py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); + if (!py_name) return NULL; + PyErr_Format(PyExc_TypeError, + "%.200S() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", + py_name, size); + Py_DECREF(py_name); +#else PyErr_Format(PyExc_TypeError, "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", f->m_ml->ml_name, size); +#endif return NULL; } break; default: - PyErr_SetString(PyExc_SystemError, "Bad call flags in " - "__Pyx_CyFunction_Call. METH_OLDARGS is no " - "longer supported!"); + PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); return NULL; } +#if CYTHON_COMPILING_IN_LIMITED_API + py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); + if (!py_name) return NULL; + PyErr_Format(PyExc_TypeError, "%.200S() takes no keyword arguments", + py_name); + Py_DECREF(py_name); +#else PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", f->m_ml->ml_name); +#endif return NULL; } static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { - return __Pyx_CyFunction_CallMethod(func, ((PyCFunctionObject*)func)->m_self, arg, kw); + PyObject *self, *result; +#if CYTHON_COMPILING_IN_LIMITED_API + self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)func)->func); + if (unlikely(!self) && PyErr_Occurred()) return NULL; +#else + self = ((PyCFunctionObject*)func)->m_self; +#endif + result = __Pyx_CyFunction_CallMethod(func, self, arg, kw); + return result; } static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { PyObject *result; __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; +#if CYTHON_METH_FASTCALL + __pyx_vectorcallfunc vc = __Pyx_CyFunction_func_vectorcall(cyfunc); + if (vc) { +#if CYTHON_ASSUME_SAFE_MACROS + return __Pyx_PyVectorcall_FastCallDict(func, vc, &PyTuple_GET_ITEM(args, 0), (size_t)PyTuple_GET_SIZE(args), kw); +#else + (void) &__Pyx_PyVectorcall_FastCallDict; + return PyVectorcall_Call(func, args, kw); +#endif + } +#endif if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { Py_ssize_t argc; PyObject *new_args; PyObject *self; +#if CYTHON_ASSUME_SAFE_MACROS argc = PyTuple_GET_SIZE(args); +#else + argc = PyTuple_Size(args); + if (unlikely(!argc) < 0) return NULL; +#endif new_args = PyTuple_GetSlice(args, 1, argc); if (unlikely(!new_args)) return NULL; @@ -12875,13 +16071,175 @@ static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, P } return result; } +#if CYTHON_METH_FASTCALL +static CYTHON_INLINE int __Pyx_CyFunction_Vectorcall_CheckArgs(__pyx_CyFunctionObject *cyfunc, Py_ssize_t nargs, PyObject *kwnames) +{ + int ret = 0; + if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { + if (unlikely(nargs < 1)) { + PyErr_Format(PyExc_TypeError, "%.200s() needs an argument", + ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); + return -1; + } + ret = 1; + } + if (unlikely(kwnames) && unlikely(PyTuple_GET_SIZE(kwnames))) { + PyErr_Format(PyExc_TypeError, + "%.200s() takes no keyword arguments", ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); + return -1; + } + return ret; +} +static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) +{ + __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; + PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; +#if CYTHON_BACKPORT_VECTORCALL + Py_ssize_t nargs = (Py_ssize_t)nargsf; +#else + Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); +#endif + PyObject *self; + switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { + case 1: + self = args[0]; + args += 1; + nargs -= 1; + break; + case 0: + self = ((PyCFunctionObject*)cyfunc)->m_self; + break; + default: + return NULL; + } + if (unlikely(nargs != 0)) { + PyErr_Format(PyExc_TypeError, + "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", + def->ml_name, nargs); + return NULL; + } + return def->ml_meth(self, NULL); +} +static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) +{ + __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; + PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; +#if CYTHON_BACKPORT_VECTORCALL + Py_ssize_t nargs = (Py_ssize_t)nargsf; +#else + Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); +#endif + PyObject *self; + switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { + case 1: + self = args[0]; + args += 1; + nargs -= 1; + break; + case 0: + self = ((PyCFunctionObject*)cyfunc)->m_self; + break; + default: + return NULL; + } + if (unlikely(nargs != 1)) { + PyErr_Format(PyExc_TypeError, + "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", + def->ml_name, nargs); + return NULL; + } + return def->ml_meth(self, args[0]); +} +static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) +{ + __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; + PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; +#if CYTHON_BACKPORT_VECTORCALL + Py_ssize_t nargs = (Py_ssize_t)nargsf; +#else + Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); +#endif + PyObject *self; + switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { + case 1: + self = args[0]; + args += 1; + nargs -= 1; + break; + case 0: + self = ((PyCFunctionObject*)cyfunc)->m_self; + break; + default: + return NULL; + } + return ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))def->ml_meth)(self, args, nargs, kwnames); +} +static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) +{ + __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; + PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; + PyTypeObject *cls = (PyTypeObject *) __Pyx_CyFunction_GetClassObj(cyfunc); +#if CYTHON_BACKPORT_VECTORCALL + Py_ssize_t nargs = (Py_ssize_t)nargsf; +#else + Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); +#endif + PyObject *self; + switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { + case 1: + self = args[0]; + args += 1; + nargs -= 1; + break; + case 0: + self = ((PyCFunctionObject*)cyfunc)->m_self; + break; + default: + return NULL; + } + return ((__Pyx_PyCMethod)(void(*)(void))def->ml_meth)(self, cls, args, (size_t)nargs, kwnames); +} +#endif +#if CYTHON_USE_TYPE_SPECS +static PyType_Slot __pyx_CyFunctionType_slots[] = { + {Py_tp_dealloc, (void *)__Pyx_CyFunction_dealloc}, + {Py_tp_repr, (void *)__Pyx_CyFunction_repr}, + {Py_tp_call, (void *)__Pyx_CyFunction_CallAsMethod}, + {Py_tp_traverse, (void *)__Pyx_CyFunction_traverse}, + {Py_tp_clear, (void *)__Pyx_CyFunction_clear}, + {Py_tp_methods, (void *)__pyx_CyFunction_methods}, + {Py_tp_members, (void *)__pyx_CyFunction_members}, + {Py_tp_getset, (void *)__pyx_CyFunction_getsets}, + {Py_tp_descr_get, (void *)__Pyx_PyMethod_New}, + {0, 0}, +}; +static PyType_Spec __pyx_CyFunctionType_spec = { + __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", + sizeof(__pyx_CyFunctionObject), + 0, +#ifdef Py_TPFLAGS_METHOD_DESCRIPTOR + Py_TPFLAGS_METHOD_DESCRIPTOR | +#endif +#if (defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL) + _Py_TPFLAGS_HAVE_VECTORCALL | +#endif + Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, + __pyx_CyFunctionType_slots +}; +#else static PyTypeObject __pyx_CyFunctionType_type = { PyVarObject_HEAD_INIT(0, 0) - "cython_function_or_method", + __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", sizeof(__pyx_CyFunctionObject), 0, (destructor) __Pyx_CyFunction_dealloc, +#if !CYTHON_METH_FASTCALL 0, +#elif CYTHON_BACKPORT_VECTORCALL + (printfunc)offsetof(__pyx_CyFunctionObject, func_vectorcall), +#else + offsetof(PyCFunctionObject, vectorcall), +#endif 0, 0, #if PY_MAJOR_VERSION < 3 @@ -12899,7 +16257,13 @@ static PyTypeObject __pyx_CyFunctionType_type = { 0, 0, 0, - Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC, +#ifdef Py_TPFLAGS_METHOD_DESCRIPTOR + Py_TPFLAGS_METHOD_DESCRIPTOR | +#endif +#if defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL + _Py_TPFLAGS_HAVE_VECTORCALL | +#endif + Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, 0, (traverseproc) __Pyx_CyFunction_traverse, (inquiry) __Pyx_CyFunction_clear, @@ -12916,7 +16280,7 @@ static PyTypeObject __pyx_CyFunctionType_type = { __pyx_CyFunction_getsets, 0, 0, - __Pyx_CyFunction_descr_get, + __Pyx_PyMethod_New, 0, offsetof(__pyx_CyFunctionObject, func_dict), 0, @@ -12937,15 +16301,24 @@ static PyTypeObject __pyx_CyFunctionType_type = { #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, #endif -#if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000 +#if __PYX_NEED_TP_PRINT_SLOT + 0, +#endif +#if PY_VERSION_HEX >= 0x030C0000 0, #endif -#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 +#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, #endif }; -static int __pyx_CyFunction_init(void) { +#endif +static int __pyx_CyFunction_init(PyObject *module) { +#if CYTHON_USE_TYPE_SPECS + __pyx_CyFunctionType = __Pyx_FetchCommonTypeFromSpec(module, &__pyx_CyFunctionType_spec, NULL); +#else + CYTHON_UNUSED_VAR(module); __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); +#endif if (unlikely(__pyx_CyFunctionType == NULL)) { return -1; } @@ -12979,178 +16352,35 @@ static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, Py /* CythonFunction */ static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname, - PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { - PyObject *op = __Pyx_CyFunction_Init( - PyObject_GC_New(__pyx_CyFunctionObject, __pyx_CyFunctionType), - ml, flags, qualname, closure, module, globals, code - ); - if (likely(op)) { - PyObject_GC_Track(op); - } - return op; -} - -/* BytesEquals */ -static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) { -#if CYTHON_COMPILING_IN_PYPY - return PyObject_RichCompareBool(s1, s2, equals); -#else - if (s1 == s2) { - return (equals == Py_EQ); - } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) { - const char *ps1, *ps2; - Py_ssize_t length = PyBytes_GET_SIZE(s1); - if (length != PyBytes_GET_SIZE(s2)) - return (equals == Py_NE); - ps1 = PyBytes_AS_STRING(s1); - ps2 = PyBytes_AS_STRING(s2); - if (ps1[0] != ps2[0]) { - return (equals == Py_NE); - } else if (length == 1) { - return (equals == Py_EQ); - } else { - int result; -#if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000) - Py_hash_t hash1, hash2; - hash1 = ((PyBytesObject*)s1)->ob_shash; - hash2 = ((PyBytesObject*)s2)->ob_shash; - if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { - return (equals == Py_NE); - } -#endif - result = memcmp(ps1, ps2, (size_t)length); - return (equals == Py_EQ) ? (result == 0) : (result != 0); - } - } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) { - return (equals == Py_NE); - } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) { - return (equals == Py_NE); - } else { - int result; - PyObject* py_result = PyObject_RichCompare(s1, s2, equals); - if (!py_result) - return -1; - result = __Pyx_PyObject_IsTrue(py_result); - Py_DECREF(py_result); - return result; - } -#endif -} - -/* UnicodeEquals */ -static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) { -#if CYTHON_COMPILING_IN_PYPY - return PyObject_RichCompareBool(s1, s2, equals); -#else -#if PY_MAJOR_VERSION < 3 - PyObject* owned_ref = NULL; -#endif - int s1_is_unicode, s2_is_unicode; - if (s1 == s2) { - goto return_eq; - } - s1_is_unicode = PyUnicode_CheckExact(s1); - s2_is_unicode = PyUnicode_CheckExact(s2); -#if PY_MAJOR_VERSION < 3 - if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) { - owned_ref = PyUnicode_FromObject(s2); - if (unlikely(!owned_ref)) - return -1; - s2 = owned_ref; - s2_is_unicode = 1; - } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) { - owned_ref = PyUnicode_FromObject(s1); - if (unlikely(!owned_ref)) - return -1; - s1 = owned_ref; - s1_is_unicode = 1; - } else if (((!s2_is_unicode) & (!s1_is_unicode))) { - return __Pyx_PyBytes_Equals(s1, s2, equals); - } -#endif - if (s1_is_unicode & s2_is_unicode) { - Py_ssize_t length; - int kind; - void *data1, *data2; - if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0)) - return -1; - length = __Pyx_PyUnicode_GET_LENGTH(s1); - if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) { - goto return_ne; - } -#if CYTHON_USE_UNICODE_INTERNALS - { - Py_hash_t hash1, hash2; - #if CYTHON_PEP393_ENABLED - hash1 = ((PyASCIIObject*)s1)->hash; - hash2 = ((PyASCIIObject*)s2)->hash; - #else - hash1 = ((PyUnicodeObject*)s1)->hash; - hash2 = ((PyUnicodeObject*)s2)->hash; - #endif - if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { - goto return_ne; - } - } -#endif - kind = __Pyx_PyUnicode_KIND(s1); - if (kind != __Pyx_PyUnicode_KIND(s2)) { - goto return_ne; - } - data1 = __Pyx_PyUnicode_DATA(s1); - data2 = __Pyx_PyUnicode_DATA(s2); - if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) { - goto return_ne; - } else if (length == 1) { - goto return_eq; - } else { - int result = memcmp(data1, data2, (size_t)(length * kind)); - #if PY_MAJOR_VERSION < 3 - Py_XDECREF(owned_ref); - #endif - return (equals == Py_EQ) ? (result == 0) : (result != 0); - } - } else if ((s1 == Py_None) & s2_is_unicode) { - goto return_ne; - } else if ((s2 == Py_None) & s1_is_unicode) { - goto return_ne; - } else { - int result; - PyObject* py_result = PyObject_RichCompare(s1, s2, equals); - #if PY_MAJOR_VERSION < 3 - Py_XDECREF(owned_ref); - #endif - if (!py_result) - return -1; - result = __Pyx_PyObject_IsTrue(py_result); - Py_DECREF(py_result); - return result; + PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { + PyObject *op = __Pyx_CyFunction_Init( + PyObject_GC_New(__pyx_CyFunctionObject, __pyx_CyFunctionType), + ml, flags, qualname, closure, module, globals, code + ); + if (likely(op)) { + PyObject_GC_Track(op); } -return_eq: - #if PY_MAJOR_VERSION < 3 - Py_XDECREF(owned_ref); - #endif - return (equals == Py_EQ); -return_ne: - #if PY_MAJOR_VERSION < 3 - Py_XDECREF(owned_ref); - #endif - return (equals == Py_NE); -#endif + return op; } /* StringJoin */ -#if !CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values) { - return PyObject_CallMethodObjArgs(sep, __pyx_n_s_join, values, NULL); -} + (void) __Pyx_PyObject_CallMethod1; +#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION < 3 + return _PyString_Join(sep, values); +#elif CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 + return _PyBytes_Join(sep, values); +#else + return __Pyx_PyObject_CallMethod1(sep, __pyx_n_s_join, values); #endif +} /* SliceObject */ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice, - int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) { + int has_cstart, int has_cstop, int wraparound) { + __Pyx_TypeName obj_type_name; #if CYTHON_USE_TYPE_SLOTS PyMappingMethods* mp; #if PY_MAJOR_VERSION < 3 @@ -13189,9 +16419,13 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj, } return ms->sq_slice(obj, cstart, cstop); } +#else + CYTHON_UNUSED_VAR(wraparound); #endif mp = Py_TYPE(obj)->tp_as_mapping; if (likely(mp && mp->mp_subscript)) +#else + CYTHON_UNUSED_VAR(wraparound); #endif { PyObject* result; @@ -13237,40 +16471,43 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj, } return result; } + obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, - "'%.200s' object is unsliceable", Py_TYPE(obj)->tp_name); + "'" __Pyx_FMT_TYPENAME "' object is unsliceable", obj_type_name); + __Pyx_DECREF_TypeName(obj_type_name); bad: return NULL; } /* PyIntCompare */ -static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED long inplace) { +static CYTHON_INLINE int __Pyx_PyInt_BoolEqObjC(PyObject *op1, PyObject *op2, long intval, long inplace) { + CYTHON_MAYBE_UNUSED_VAR(intval); + CYTHON_UNUSED_VAR(inplace); if (op1 == op2) { - Py_RETURN_TRUE; + return 1; } #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(op1))) { const long b = intval; long a = PyInt_AS_LONG(op1); - if (a == b) Py_RETURN_TRUE; else Py_RETURN_FALSE; + return (a == b); } #endif #if CYTHON_USE_PYLONG_INTERNALS if (likely(PyLong_CheckExact(op1))) { int unequal; unsigned long uintval; - Py_ssize_t size = Py_SIZE(op1); - const digit* digits = ((PyLongObject*)op1)->ob_digit; + Py_ssize_t size = __Pyx_PyLong_DigitCount(op1); + const digit* digits = __Pyx_PyLong_Digits(op1); if (intval == 0) { - if (size == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE; + return (__Pyx_PyLong_IsZero(op1) == 1); } else if (intval < 0) { - if (size >= 0) - Py_RETURN_FALSE; + if (__Pyx_PyLong_IsNonNeg(op1)) + return 0; intval = -intval; - size = -size; } else { - if (size <= 0) - Py_RETURN_FALSE; + if (__Pyx_PyLong_IsNeg(op1)) + return 0; } uintval = (unsigned long) intval; #if PyLong_SHIFT * 4 < SIZEOF_LONG*8 @@ -13298,47 +16535,27 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, } else #endif unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK)); - if (unequal == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE; + return (unequal == 0); } #endif if (PyFloat_CheckExact(op1)) { const long b = intval; +#if CYTHON_COMPILING_IN_LIMITED_API + double a = __pyx_PyFloat_AsDouble(op1); +#else double a = PyFloat_AS_DOUBLE(op1); - if ((double)a == (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE; +#endif + return ((double)a == (double)b); } - return ( + return __Pyx_PyObject_IsTrueAndDecref( PyObject_RichCompare(op1, op2, Py_EQ)); } -/* PyErrFetchRestore */ -#if CYTHON_FAST_THREAD_STATE -static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { - PyObject *tmp_type, *tmp_value, *tmp_tb; - tmp_type = tstate->curexc_type; - tmp_value = tstate->curexc_value; - tmp_tb = tstate->curexc_traceback; - tstate->curexc_type = type; - tstate->curexc_value = value; - tstate->curexc_traceback = tb; - Py_XDECREF(tmp_type); - Py_XDECREF(tmp_value); - Py_XDECREF(tmp_tb); -} -static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { - *type = tstate->curexc_type; - *value = tstate->curexc_value; - *tb = tstate->curexc_traceback; - tstate->curexc_type = 0; - tstate->curexc_value = 0; - tstate->curexc_traceback = 0; -} -#endif - /* RaiseException */ #if PY_MAJOR_VERSION < 3 -static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, - CYTHON_UNUSED PyObject *cause) { +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { __Pyx_PyThreadState_declare + CYTHON_UNUSED_VAR(cause); Py_XINCREF(type); if (!value || value == Py_None) value = NULL; @@ -13471,13 +16688,9 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject } PyErr_SetObject(type, value); if (tb) { -#if CYTHON_COMPILING_IN_PYPY - PyObject *tmp_type, *tmp_value, *tmp_tb; - PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); - Py_INCREF(tb); - PyErr_Restore(tmp_type, tmp_value, tb); - Py_XDECREF(tmp_tb); -#else + #if PY_VERSION_HEX >= 0x030C00A6 + PyException_SetTraceback(value, tb); + #elif CYTHON_FAST_THREAD_STATE PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { @@ -13485,6 +16698,12 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject tstate->curexc_traceback = tb; Py_XDECREF(tmp_tb); } +#else + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); + Py_INCREF(tb); + PyErr_Restore(tmp_type, tmp_value, tb); + Py_XDECREF(tmp_tb); #endif } bad: @@ -13493,70 +16712,231 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject } #endif +/* PyIntBinop */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_MultiplyObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { + CYTHON_MAYBE_UNUSED_VAR(intval); + CYTHON_MAYBE_UNUSED_VAR(inplace); + CYTHON_UNUSED_VAR(zerodivision_check); + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op1))) { + const long b = intval; + long a = PyInt_AS_LONG(op1); + +#ifdef HAVE_LONG_LONG + if (sizeof(PY_LONG_LONG) > sizeof(long)) { + PY_LONG_LONG result = (PY_LONG_LONG)a * (PY_LONG_LONG)b; + return (result >= LONG_MIN && result <= LONG_MAX) ? + PyInt_FromLong((long)result) : PyLong_FromLongLong(result); + } +#endif +#if CYTHON_USE_TYPE_SLOTS + return PyInt_Type.tp_as_number->nb_multiply(op1, op2); +#else + return PyNumber_Multiply(op1, op2); +#endif + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op1))) { + const long b = intval; + long a, x; +#ifdef HAVE_LONG_LONG + const PY_LONG_LONG llb = intval; + PY_LONG_LONG lla, llx; +#endif + if (unlikely(__Pyx_PyLong_IsZero(op1))) { + return __Pyx_NewRef(op1); + } + if (likely(__Pyx_PyLong_IsCompact(op1))) { + a = __Pyx_PyLong_CompactValue(op1); + } else { + const digit* digits = __Pyx_PyLong_Digits(op1); + const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(op1); + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT+30) { + a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + #ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT+30) { + lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; + #endif + } + CYTHON_FALLTHROUGH; + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT+30) { + a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + #ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT+30) { + lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; + #endif + } + CYTHON_FALLTHROUGH; + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT+30) { + a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + #ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT+30) { + lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; + #endif + } + CYTHON_FALLTHROUGH; + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT+30) { + a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + #ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT+30) { + lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; + #endif + } + CYTHON_FALLTHROUGH; + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT+30) { + a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + #ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT+30) { + lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; + #endif + } + CYTHON_FALLTHROUGH; + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT+30) { + a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + #ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT+30) { + lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; + #endif + } + CYTHON_FALLTHROUGH; + default: return PyLong_Type.tp_as_number->nb_multiply(op1, op2); + } + } + CYTHON_UNUSED_VAR(a); + CYTHON_UNUSED_VAR(b); + #ifdef HAVE_LONG_LONG + lla = a; + goto long_long; + #else + return PyLong_Type.tp_as_number->nb_multiply(op1, op2); + #endif + return PyLong_FromLong(x); +#ifdef HAVE_LONG_LONG + long_long: + llx = lla * llb; + return PyLong_FromLongLong(llx); +#endif + + + } + #endif + if (PyFloat_CheckExact(op1)) { + const long b = intval; +#if CYTHON_COMPILING_IN_LIMITED_API + double a = __pyx_PyFloat_AsDouble(op1); +#else + double a = PyFloat_AS_DOUBLE(op1); +#endif + double result; + + PyFPE_START_PROTECT("multiply", return NULL) + result = ((double)a) * (double)b; + PyFPE_END_PROTECT(result) + return PyFloat_FromDouble(result); + } + return (inplace ? PyNumber_InPlaceMultiply : PyNumber_Multiply)(op1, op2); +} +#endif + /* ObjectGetItem */ #if CYTHON_USE_TYPE_SLOTS -static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject* index) { +static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject *index) { PyObject *runerr = NULL; Py_ssize_t key_value; - PySequenceMethods *m = Py_TYPE(obj)->tp_as_sequence; - if (unlikely(!(m && m->sq_item))) { - PyErr_Format(PyExc_TypeError, "'%.200s' object is not subscriptable", Py_TYPE(obj)->tp_name); - return NULL; - } key_value = __Pyx_PyIndex_AsSsize_t(index); if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) { return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1); } if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) { + __Pyx_TypeName index_type_name = __Pyx_PyType_GetName(Py_TYPE(index)); PyErr_Clear(); - PyErr_Format(PyExc_IndexError, "cannot fit '%.200s' into an index-sized integer", Py_TYPE(index)->tp_name); + PyErr_Format(PyExc_IndexError, + "cannot fit '" __Pyx_FMT_TYPENAME "' into an index-sized integer", index_type_name); + __Pyx_DECREF_TypeName(index_type_name); + } + return NULL; +} +static PyObject *__Pyx_PyObject_GetItem_Slow(PyObject *obj, PyObject *key) { + __Pyx_TypeName obj_type_name; + if (likely(PyType_Check(obj))) { + PyObject *meth = __Pyx_PyObject_GetAttrStrNoError(obj, __pyx_n_s_class_getitem); + if (!meth) { + PyErr_Clear(); + } else { + PyObject *result = __Pyx_PyObject_CallOneArg(meth, key); + Py_DECREF(meth); + return result; + } } + obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); + PyErr_Format(PyExc_TypeError, + "'" __Pyx_FMT_TYPENAME "' object is not subscriptable", obj_type_name); + __Pyx_DECREF_TypeName(obj_type_name); return NULL; } -static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key) { - PyMappingMethods *m = Py_TYPE(obj)->tp_as_mapping; - if (likely(m && m->mp_subscript)) { - return m->mp_subscript(obj, key); +static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key) { + PyTypeObject *tp = Py_TYPE(obj); + PyMappingMethods *mm = tp->tp_as_mapping; + PySequenceMethods *sm = tp->tp_as_sequence; + if (likely(mm && mm->mp_subscript)) { + return mm->mp_subscript(obj, key); + } + if (likely(sm && sm->sq_item)) { + return __Pyx_PyObject_GetIndex(obj, key); } - return __Pyx_PyObject_GetIndex(obj, key); + return __Pyx_PyObject_GetItem_Slow(obj, key); } #endif /* Import */ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { - PyObject *empty_list = 0; PyObject *module = 0; - PyObject *global_dict = 0; PyObject *empty_dict = 0; - PyObject *list; + PyObject *empty_list = 0; #if PY_MAJOR_VERSION < 3 PyObject *py_import; py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); - if (!py_import) + if (unlikely(!py_import)) goto bad; - #endif - if (from_list) - list = from_list; - else { + if (!from_list) { empty_list = PyList_New(0); - if (!empty_list) + if (unlikely(!empty_list)) goto bad; - list = empty_list; + from_list = empty_list; } - global_dict = PyModule_GetDict(__pyx_m); - if (!global_dict) - goto bad; + #endif empty_dict = PyDict_New(); - if (!empty_dict) + if (unlikely(!empty_dict)) goto bad; { #if PY_MAJOR_VERSION >= 3 if (level == -1) { - if ((1) && (strchr(__Pyx_MODULE_NAME, '.'))) { + if (strchr(__Pyx_MODULE_NAME, '.') != NULL) { module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, 1); - if (!module) { - if (!PyErr_ExceptionMatches(PyExc_ImportError)) + name, __pyx_d, empty_dict, from_list, 1); + if (unlikely(!module)) { + if (unlikely(!PyErr_ExceptionMatches(PyExc_ImportError))) goto bad; PyErr_Clear(); } @@ -13567,30 +16947,187 @@ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { if (!module) { #if PY_MAJOR_VERSION < 3 PyObject *py_level = PyInt_FromLong(level); - if (!py_level) + if (unlikely(!py_level)) goto bad; module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, (PyObject *)NULL); + name, __pyx_d, empty_dict, from_list, py_level, (PyObject *)NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, level); + name, __pyx_d, empty_dict, from_list, level); #endif } } bad: + Py_XDECREF(empty_dict); + Py_XDECREF(empty_list); #if PY_MAJOR_VERSION < 3 Py_XDECREF(py_import); #endif - Py_XDECREF(empty_list); - Py_XDECREF(empty_dict); return module; } +/* ImportDottedModule */ +#if PY_MAJOR_VERSION >= 3 +static PyObject *__Pyx__ImportDottedModule_Error(PyObject *name, PyObject *parts_tuple, Py_ssize_t count) { + PyObject *partial_name = NULL, *slice = NULL, *sep = NULL; + if (unlikely(PyErr_Occurred())) { + PyErr_Clear(); + } + if (likely(PyTuple_GET_SIZE(parts_tuple) == count)) { + partial_name = name; + } else { + slice = PySequence_GetSlice(parts_tuple, 0, count); + if (unlikely(!slice)) + goto bad; + sep = PyUnicode_FromStringAndSize(".", 1); + if (unlikely(!sep)) + goto bad; + partial_name = PyUnicode_Join(sep, slice); + } + PyErr_Format( +#if PY_MAJOR_VERSION < 3 + PyExc_ImportError, + "No module named '%s'", PyString_AS_STRING(partial_name)); +#else +#if PY_VERSION_HEX >= 0x030600B1 + PyExc_ModuleNotFoundError, +#else + PyExc_ImportError, +#endif + "No module named '%U'", partial_name); +#endif +bad: + Py_XDECREF(sep); + Py_XDECREF(slice); + Py_XDECREF(partial_name); + return NULL; +} +#endif +#if PY_MAJOR_VERSION >= 3 +static PyObject *__Pyx__ImportDottedModule_Lookup(PyObject *name) { + PyObject *imported_module; +#if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400) + PyObject *modules = PyImport_GetModuleDict(); + if (unlikely(!modules)) + return NULL; + imported_module = __Pyx_PyDict_GetItemStr(modules, name); + Py_XINCREF(imported_module); +#else + imported_module = PyImport_GetModule(name); +#endif + return imported_module; +} +#endif +#if PY_MAJOR_VERSION >= 3 +static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple) { + Py_ssize_t i, nparts; + nparts = PyTuple_GET_SIZE(parts_tuple); + for (i=1; i < nparts && module; i++) { + PyObject *part, *submodule; +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + part = PyTuple_GET_ITEM(parts_tuple, i); +#else + part = PySequence_ITEM(parts_tuple, i); +#endif + submodule = __Pyx_PyObject_GetAttrStrNoError(module, part); +#if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) + Py_DECREF(part); +#endif + Py_DECREF(module); + module = submodule; + } + if (unlikely(!module)) { + return __Pyx__ImportDottedModule_Error(name, parts_tuple, i); + } + return module; +} +#endif +static PyObject *__Pyx__ImportDottedModule(PyObject *name, PyObject *parts_tuple) { +#if PY_MAJOR_VERSION < 3 + PyObject *module, *from_list, *star = __pyx_n_s__10; + CYTHON_UNUSED_VAR(parts_tuple); + from_list = PyList_New(1); + if (unlikely(!from_list)) + return NULL; + Py_INCREF(star); + PyList_SET_ITEM(from_list, 0, star); + module = __Pyx_Import(name, from_list, 0); + Py_DECREF(from_list); + return module; +#else + PyObject *imported_module; + PyObject *module = __Pyx_Import(name, NULL, 0); + if (!parts_tuple || unlikely(!module)) + return module; + imported_module = __Pyx__ImportDottedModule_Lookup(name); + if (likely(imported_module)) { + Py_DECREF(module); + return imported_module; + } + PyErr_Clear(); + return __Pyx_ImportDottedModule_WalkParts(module, name, parts_tuple); +#endif +} +static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple) { +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030400B1 + PyObject *module = __Pyx__ImportDottedModule_Lookup(name); + if (likely(module)) { + PyObject *spec = __Pyx_PyObject_GetAttrStrNoError(module, __pyx_n_s_spec); + if (likely(spec)) { + PyObject *unsafe = __Pyx_PyObject_GetAttrStrNoError(spec, __pyx_n_s_initializing); + if (likely(!unsafe || !__Pyx_PyObject_IsTrue(unsafe))) { + Py_DECREF(spec); + spec = NULL; + } + Py_XDECREF(unsafe); + } + if (likely(!spec)) { + PyErr_Clear(); + return module; + } + Py_DECREF(spec); + Py_DECREF(module); + } else if (PyErr_Occurred()) { + PyErr_Clear(); + } +#endif + return __Pyx__ImportDottedModule(name, parts_tuple); +} + /* ImportFrom */ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { + const char* module_name_str = 0; + PyObject* module_name = 0; + PyObject* module_dot = 0; + PyObject* full_name = 0; + PyErr_Clear(); + module_name_str = PyModule_GetName(module); + if (unlikely(!module_name_str)) { goto modbad; } + module_name = PyUnicode_FromString(module_name_str); + if (unlikely(!module_name)) { goto modbad; } + module_dot = PyUnicode_Concat(module_name, __pyx_kp_u__11); + if (unlikely(!module_dot)) { goto modbad; } + full_name = PyUnicode_Concat(module_dot, name); + if (unlikely(!full_name)) { goto modbad; } + #if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400) + { + PyObject *modules = PyImport_GetModuleDict(); + if (unlikely(!modules)) + goto modbad; + value = PyObject_GetItem(modules, full_name); + } + #else + value = PyImport_GetModule(full_name); + #endif + modbad: + Py_XDECREF(full_name); + Py_XDECREF(module_dot); + Py_XDECREF(module_name); + } + if (unlikely(!value)) { PyErr_Format(PyExc_ImportError, #if PY_MAJOR_VERSION < 3 "cannot import name %.230s", PyString_AS_STRING(name)); @@ -13603,12 +17140,13 @@ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { /* CLineInTraceback */ #ifndef CYTHON_CLINE_IN_TRACEBACK -static int __Pyx_CLineForTraceback(CYTHON_UNUSED PyThreadState *tstate, int c_line) { +static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) { PyObject *use_cline; PyObject *ptype, *pvalue, *ptraceback; #if CYTHON_COMPILING_IN_CPYTHON PyObject **cython_runtime_dict; #endif + CYTHON_MAYBE_UNUSED_VAR(tstate); if (unlikely(!__pyx_cython_runtime)) { return c_line; } @@ -13622,7 +17160,7 @@ static int __Pyx_CLineForTraceback(CYTHON_UNUSED PyThreadState *tstate, int c_li } else #endif { - PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStrNoError(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); if (use_cline_obj) { use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; Py_DECREF(use_cline_obj); @@ -13644,6 +17182,7 @@ static int __Pyx_CLineForTraceback(CYTHON_UNUSED PyThreadState *tstate, int c_li #endif /* CodeObjectCache */ +#if !CYTHON_COMPILING_IN_LIMITED_API static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { @@ -13722,17 +17261,101 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { __pyx_code_cache.count++; Py_INCREF(code_object); } +#endif /* AddTraceback */ #include "compile.h" #include "frameobject.h" #include "traceback.h" -#if PY_VERSION_HEX >= 0x030b00a6 +#if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API #ifndef Py_BUILD_CORE #define Py_BUILD_CORE 1 #endif #include "internal/pycore_frame.h" #endif +#if CYTHON_COMPILING_IN_LIMITED_API +static PyObject *__Pyx_PyCode_Replace_For_AddTraceback(PyObject *code, PyObject *scratch_dict, + PyObject *firstlineno, PyObject *name) { + PyObject *replace = NULL; + if (unlikely(PyDict_SetItemString(scratch_dict, "co_firstlineno", firstlineno))) return NULL; + if (unlikely(PyDict_SetItemString(scratch_dict, "co_name", name))) return NULL; + replace = PyObject_GetAttrString(code, "replace"); + if (likely(replace)) { + PyObject *result; + result = PyObject_Call(replace, __pyx_empty_tuple, scratch_dict); + Py_DECREF(replace); + return result; + } + PyErr_Clear(); + #if __PYX_LIMITED_VERSION_HEX < 0x030780000 + { + PyObject *compiled = NULL, *result = NULL; + if (unlikely(PyDict_SetItemString(scratch_dict, "code", code))) return NULL; + if (unlikely(PyDict_SetItemString(scratch_dict, "type", (PyObject*)(&PyType_Type)))) return NULL; + compiled = Py_CompileString( + "out = type(code)(\n" + " code.co_argcount, code.co_kwonlyargcount, code.co_nlocals, code.co_stacksize,\n" + " code.co_flags, code.co_code, code.co_consts, code.co_names,\n" + " code.co_varnames, code.co_filename, co_name, co_firstlineno,\n" + " code.co_lnotab)\n", "", Py_file_input); + if (!compiled) return NULL; + result = PyEval_EvalCode(compiled, scratch_dict, scratch_dict); + Py_DECREF(compiled); + if (!result) PyErr_Print(); + Py_DECREF(result); + result = PyDict_GetItemString(scratch_dict, "out"); + if (result) Py_INCREF(result); + return result; + } + #else + return NULL; + #endif +} +static void __Pyx_AddTraceback(const char *funcname, int c_line, + int py_line, const char *filename) { + PyObject *code_object = NULL, *py_py_line = NULL, *py_funcname = NULL, *dict = NULL; + PyObject *replace = NULL, *getframe = NULL, *frame = NULL; + PyObject *exc_type, *exc_value, *exc_traceback; + int success = 0; + if (c_line) { + (void) __pyx_cfilenm; + (void) __Pyx_CLineForTraceback(__Pyx_PyThreadState_Current, c_line); + } + PyErr_Fetch(&exc_type, &exc_value, &exc_traceback); + code_object = Py_CompileString("_getframe()", filename, Py_eval_input); + if (unlikely(!code_object)) goto bad; + py_py_line = PyLong_FromLong(py_line); + if (unlikely(!py_py_line)) goto bad; + py_funcname = PyUnicode_FromString(funcname); + if (unlikely(!py_funcname)) goto bad; + dict = PyDict_New(); + if (unlikely(!dict)) goto bad; + { + PyObject *old_code_object = code_object; + code_object = __Pyx_PyCode_Replace_For_AddTraceback(code_object, dict, py_py_line, py_funcname); + Py_DECREF(old_code_object); + } + if (unlikely(!code_object)) goto bad; + getframe = PySys_GetObject("_getframe"); + if (unlikely(!getframe)) goto bad; + if (unlikely(PyDict_SetItemString(dict, "_getframe", getframe))) goto bad; + frame = PyEval_EvalCode(code_object, dict, dict); + if (unlikely(!frame) || frame == Py_None) goto bad; + success = 1; + bad: + PyErr_Restore(exc_type, exc_value, exc_traceback); + Py_XDECREF(code_object); + Py_XDECREF(py_py_line); + Py_XDECREF(py_funcname); + Py_XDECREF(dict); + Py_XDECREF(replace); + if (success) { + PyTraceBack_Here( + (struct _frame*)frame); + } + Py_XDECREF(frame); +} +#else static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( const char *funcname, int c_line, int py_line, const char *filename) { @@ -13767,6 +17390,7 @@ static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( 0, 0, 0, + 0, __pyx_empty_bytes, /*PyObject *code,*/ __pyx_empty_tuple, /*PyObject *consts,*/ __pyx_empty_tuple, /*PyObject *names,*/ @@ -13782,7 +17406,7 @@ static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( #else py_code = PyCode_NewEmpty(filename, funcname, py_line); #endif - Py_XDECREF(py_funcname); // XDECREF since it's only set on Py3 if cline + Py_XDECREF(py_funcname); return py_code; bad: Py_XDECREF(py_funcname); @@ -13829,6 +17453,7 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, Py_XDECREF(py_code); Py_XDECREF(py_frame); } +#endif /* CIntFromPyVerify */ #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ @@ -13865,7 +17490,7 @@ static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *x) { const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { - if (sizeof(unsigned int) < sizeof(long)) { + if ((sizeof(unsigned int) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(unsigned int, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); @@ -13879,40 +17504,45 @@ static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *x) { if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS - const digit* digits = ((PyLongObject*)x)->ob_digit; - switch (Py_SIZE(x)) { - case 0: return (unsigned int) 0; - case 1: __PYX_VERIFY_RETURN_INT(unsigned int, digit, digits[0]) - case 2: - if (8 * sizeof(unsigned int) > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned int) >= 2 * PyLong_SHIFT) { - return (unsigned int) (((((unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])); + if (unlikely(__Pyx_PyLong_IsNeg(x))) { + goto raise_neg_overflow; + } else if (__Pyx_PyLong_IsCompact(x)) { + __PYX_VERIFY_RETURN_INT(unsigned int, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) + } else { + const digit* digits = __Pyx_PyLong_Digits(x); + assert(__Pyx_PyLong_DigitCount(x) > 1); + switch (__Pyx_PyLong_DigitCount(x)) { + case 2: + if ((8 * sizeof(unsigned int) > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned int) >= 2 * PyLong_SHIFT)) { + return (unsigned int) (((((unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])); + } } - } - break; - case 3: - if (8 * sizeof(unsigned int) > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned int) >= 3 * PyLong_SHIFT) { - return (unsigned int) (((((((unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])); + break; + case 3: + if ((8 * sizeof(unsigned int) > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned int) >= 3 * PyLong_SHIFT)) { + return (unsigned int) (((((((unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])); + } } - } - break; - case 4: - if (8 * sizeof(unsigned int) > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned int) >= 4 * PyLong_SHIFT) { - return (unsigned int) (((((((((unsigned int)digits[3]) << PyLong_SHIFT) | (unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])); + break; + case 4: + if ((8 * sizeof(unsigned int) > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned int) >= 4 * PyLong_SHIFT)) { + return (unsigned int) (((((((((unsigned int)digits[3]) << PyLong_SHIFT) | (unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])); + } } - } - break; + break; + } } #endif -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } @@ -13925,109 +17555,181 @@ static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *x) { goto raise_neg_overflow; } #endif - if (sizeof(unsigned int) <= sizeof(unsigned long)) { + if ((sizeof(unsigned int) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(unsigned int, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG - } else if (sizeof(unsigned int) <= sizeof(unsigned PY_LONG_LONG)) { + } else if ((sizeof(unsigned int) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(unsigned int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS - const digit* digits = ((PyLongObject*)x)->ob_digit; - switch (Py_SIZE(x)) { - case 0: return (unsigned int) 0; - case -1: __PYX_VERIFY_RETURN_INT(unsigned int, sdigit, (sdigit) (-(sdigit)digits[0])) - case 1: __PYX_VERIFY_RETURN_INT(unsigned int, digit, +digits[0]) - case -2: - if (8 * sizeof(unsigned int) - 1 > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned int) - 1 > 2 * PyLong_SHIFT) { - return (unsigned int) (((unsigned int)-1)*(((((unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); - } - } - break; - case 2: - if (8 * sizeof(unsigned int) > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned int) - 1 > 2 * PyLong_SHIFT) { - return (unsigned int) ((((((unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); - } - } - break; - case -3: - if (8 * sizeof(unsigned int) - 1 > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned int) - 1 > 3 * PyLong_SHIFT) { - return (unsigned int) (((unsigned int)-1)*(((((((unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + if (__Pyx_PyLong_IsCompact(x)) { + __PYX_VERIFY_RETURN_INT(unsigned int, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) + } else { + const digit* digits = __Pyx_PyLong_Digits(x); + assert(__Pyx_PyLong_DigitCount(x) > 1); + switch (__Pyx_PyLong_SignedDigitCount(x)) { + case -2: + if ((8 * sizeof(unsigned int) - 1 > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned int) - 1 > 2 * PyLong_SHIFT)) { + return (unsigned int) (((unsigned int)-1)*(((((unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + } } - } - break; - case 3: - if (8 * sizeof(unsigned int) > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned int) - 1 > 3 * PyLong_SHIFT) { - return (unsigned int) ((((((((unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + break; + case 2: + if ((8 * sizeof(unsigned int) > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned int) - 1 > 2 * PyLong_SHIFT)) { + return (unsigned int) ((((((unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + } } - } - break; - case -4: - if (8 * sizeof(unsigned int) - 1 > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned int) - 1 > 4 * PyLong_SHIFT) { - return (unsigned int) (((unsigned int)-1)*(((((((((unsigned int)digits[3]) << PyLong_SHIFT) | (unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + break; + case -3: + if ((8 * sizeof(unsigned int) - 1 > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned int) - 1 > 3 * PyLong_SHIFT)) { + return (unsigned int) (((unsigned int)-1)*(((((((unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + } } - } - break; - case 4: - if (8 * sizeof(unsigned int) > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned int) - 1 > 4 * PyLong_SHIFT) { - return (unsigned int) ((((((((((unsigned int)digits[3]) << PyLong_SHIFT) | (unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + break; + case 3: + if ((8 * sizeof(unsigned int) > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned int) - 1 > 3 * PyLong_SHIFT)) { + return (unsigned int) ((((((((unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + } } - } - break; + break; + case -4: + if ((8 * sizeof(unsigned int) - 1 > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned int) - 1 > 4 * PyLong_SHIFT)) { + return (unsigned int) (((unsigned int)-1)*(((((((((unsigned int)digits[3]) << PyLong_SHIFT) | (unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + } + } + break; + case 4: + if ((8 * sizeof(unsigned int) > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned int) - 1 > 4 * PyLong_SHIFT)) { + return (unsigned int) ((((((((((unsigned int)digits[3]) << PyLong_SHIFT) | (unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]))); + } + } + break; + } } #endif - if (sizeof(unsigned int) <= sizeof(long)) { + if ((sizeof(unsigned int) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(unsigned int, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG - } else if (sizeof(unsigned int) <= sizeof(PY_LONG_LONG)) { + } else if ((sizeof(unsigned int) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(unsigned int, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else unsigned int val; PyObject *v = __Pyx_PyNumber_IntOrLong(x); - #if PY_MAJOR_VERSION < 3 +#if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } - #endif +#endif if (likely(v)) { + int ret = -1; +#if PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); + ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); +#else + PyObject *stepval = NULL, *mask = NULL, *shift = NULL; + int bits, remaining_bits, is_negative = 0; + long idigit; + int chunk_size = (sizeof(long) < 8) ? 30 : 62; + if (unlikely(!PyLong_CheckExact(v))) { + PyObject *tmp = v; + v = PyNumber_Long(v); + assert(PyLong_CheckExact(v)); + Py_DECREF(tmp); + if (unlikely(!v)) return (unsigned int) -1; + } +#if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + if (Py_SIZE(x) == 0) + return (unsigned int) 0; + is_negative = Py_SIZE(x) < 0; +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (unsigned int) -1; + is_negative = result == 1; + } +#endif + if (is_unsigned && unlikely(is_negative)) { + goto raise_neg_overflow; + } else if (is_negative) { + stepval = PyNumber_Invert(v); + if (unlikely(!stepval)) + return (unsigned int) -1; + } else { + stepval = __Pyx_NewRef(v); + } + val = (unsigned int) 0; + mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; + shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; + for (bits = 0; bits < (int) sizeof(unsigned int) * 8 - chunk_size; bits += chunk_size) { + PyObject *tmp, *digit; + digit = PyNumber_And(stepval, mask); + if (unlikely(!digit)) goto done; + idigit = PyLong_AsLong(digit); + Py_DECREF(digit); + if (unlikely(idigit < 0)) goto done; + tmp = PyNumber_Rshift(stepval, shift); + if (unlikely(!tmp)) goto done; + Py_DECREF(stepval); stepval = tmp; + val |= ((unsigned int) idigit) << bits; + #if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + if (Py_SIZE(stepval) == 0) + goto unpacking_done; + #endif + } + idigit = PyLong_AsLong(stepval); + if (unlikely(idigit < 0)) goto done; + remaining_bits = ((int) sizeof(unsigned int) * 8) - bits - (is_unsigned ? 0 : 1); + if (unlikely(idigit >= (1L << remaining_bits))) + goto raise_overflow; + val |= ((unsigned int) idigit) << bits; + #if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + unpacking_done: + #endif + if (!is_unsigned) { + if (unlikely(val & (((unsigned int) 1) << (sizeof(unsigned int) * 8 - 1)))) + goto raise_overflow; + if (is_negative) + val = ~val; + } + ret = 0; + done: + Py_XDECREF(shift); + Py_XDECREF(mask); + Py_XDECREF(stepval); +#endif Py_DECREF(v); if (likely(!ret)) return val; } -#endif return (unsigned int) -1; } } else { @@ -14061,7 +17763,7 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { - if (sizeof(int) < sizeof(long)) { + if ((sizeof(int) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); @@ -14075,40 +17777,45 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS - const digit* digits = ((PyLongObject*)x)->ob_digit; - switch (Py_SIZE(x)) { - case 0: return (int) 0; - case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0]) - case 2: - if (8 * sizeof(int) > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) { - return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + if (unlikely(__Pyx_PyLong_IsNeg(x))) { + goto raise_neg_overflow; + } else if (__Pyx_PyLong_IsCompact(x)) { + __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) + } else { + const digit* digits = __Pyx_PyLong_Digits(x); + assert(__Pyx_PyLong_DigitCount(x) > 1); + switch (__Pyx_PyLong_DigitCount(x)) { + case 2: + if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(int) >= 2 * PyLong_SHIFT)) { + return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } } - } - break; - case 3: - if (8 * sizeof(int) > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) { - return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + break; + case 3: + if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(int) >= 3 * PyLong_SHIFT)) { + return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } } - } - break; - case 4: - if (8 * sizeof(int) > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) { - return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + break; + case 4: + if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(int) >= 4 * PyLong_SHIFT)) { + return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } } - } - break; + break; + } } #endif -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } @@ -14121,109 +17828,181 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { goto raise_neg_overflow; } #endif - if (sizeof(int) <= sizeof(unsigned long)) { + if ((sizeof(int) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG - } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + } else if ((sizeof(int) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS - const digit* digits = ((PyLongObject*)x)->ob_digit; - switch (Py_SIZE(x)) { - case 0: return (int) 0; - case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0])) - case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0]) - case -2: - if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { - return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + if (__Pyx_PyLong_IsCompact(x)) { + __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) + } else { + const digit* digits = __Pyx_PyLong_Digits(x); + assert(__Pyx_PyLong_DigitCount(x) > 1); + switch (__Pyx_PyLong_SignedDigitCount(x)) { + case -2: + if ((8 * sizeof(int) - 1 > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { + return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } } - } - break; - case 2: - if (8 * sizeof(int) > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { - return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + break; + case 2: + if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { + return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } } - } - break; - case -3: - if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { - return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + break; + case -3: + if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { + return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } } - } - break; - case 3: - if (8 * sizeof(int) > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { - return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + break; + case 3: + if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { + return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } } - } - break; - case -4: - if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { - return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + break; + case -4: + if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { + return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } } - } - break; - case 4: - if (8 * sizeof(int) > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { - return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + break; + case 4: + if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { + return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } } - } - break; + break; + } } #endif - if (sizeof(int) <= sizeof(long)) { + if ((sizeof(int) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG - } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + } else if ((sizeof(int) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else int val; PyObject *v = __Pyx_PyNumber_IntOrLong(x); - #if PY_MAJOR_VERSION < 3 +#if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } - #endif +#endif if (likely(v)) { + int ret = -1; +#if PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); + ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); +#else + PyObject *stepval = NULL, *mask = NULL, *shift = NULL; + int bits, remaining_bits, is_negative = 0; + long idigit; + int chunk_size = (sizeof(long) < 8) ? 30 : 62; + if (unlikely(!PyLong_CheckExact(v))) { + PyObject *tmp = v; + v = PyNumber_Long(v); + assert(PyLong_CheckExact(v)); + Py_DECREF(tmp); + if (unlikely(!v)) return (int) -1; + } +#if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + if (Py_SIZE(x) == 0) + return (int) 0; + is_negative = Py_SIZE(x) < 0; +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (int) -1; + is_negative = result == 1; + } +#endif + if (is_unsigned && unlikely(is_negative)) { + goto raise_neg_overflow; + } else if (is_negative) { + stepval = PyNumber_Invert(v); + if (unlikely(!stepval)) + return (int) -1; + } else { + stepval = __Pyx_NewRef(v); + } + val = (int) 0; + mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; + shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; + for (bits = 0; bits < (int) sizeof(int) * 8 - chunk_size; bits += chunk_size) { + PyObject *tmp, *digit; + digit = PyNumber_And(stepval, mask); + if (unlikely(!digit)) goto done; + idigit = PyLong_AsLong(digit); + Py_DECREF(digit); + if (unlikely(idigit < 0)) goto done; + tmp = PyNumber_Rshift(stepval, shift); + if (unlikely(!tmp)) goto done; + Py_DECREF(stepval); stepval = tmp; + val |= ((int) idigit) << bits; + #if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + if (Py_SIZE(stepval) == 0) + goto unpacking_done; + #endif + } + idigit = PyLong_AsLong(stepval); + if (unlikely(idigit < 0)) goto done; + remaining_bits = ((int) sizeof(int) * 8) - bits - (is_unsigned ? 0 : 1); + if (unlikely(idigit >= (1L << remaining_bits))) + goto raise_overflow; + val |= ((int) idigit) << bits; + #if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + unpacking_done: + #endif + if (!is_unsigned) { + if (unlikely(val & (((int) 1) << (sizeof(int) * 8 - 1)))) + goto raise_overflow; + if (is_negative) + val = ~val; + } + ret = 0; + done: + Py_XDECREF(shift); + Py_XDECREF(mask); + Py_XDECREF(stepval); +#endif Py_DECREF(v); if (likely(!ret)) return val; } -#endif return (int) -1; } } else { @@ -14277,8 +18056,34 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; +#if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 return _PyLong_FromByteArray(bytes, sizeof(int), little, !is_unsigned); +#else + PyObject *from_bytes, *result = NULL; + PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; + from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); + if (!from_bytes) return NULL; + py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int)); + if (!py_bytes) goto limited_bad; + order_str = PyUnicode_FromString(little ? "little" : "big"); + if (!order_str) goto limited_bad; + arg_tuple = PyTuple_Pack(2, py_bytes, order_str); + if (!arg_tuple) goto limited_bad; + if (!is_unsigned) { + kwds = PyDict_New(); + if (!kwds) goto limited_bad; + if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; + } + result = PyObject_Call(from_bytes, arg_tuple, kwds); + limited_bad: + Py_XDECREF(kwds); + Py_XDECREF(arg_tuple); + Py_XDECREF(order_str); + Py_XDECREF(py_bytes); + Py_XDECREF(from_bytes); + return result; +#endif } } @@ -14315,8 +18120,34 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value) { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; +#if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 return _PyLong_FromByteArray(bytes, sizeof(unsigned int), little, !is_unsigned); +#else + PyObject *from_bytes, *result = NULL; + PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; + from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); + if (!from_bytes) return NULL; + py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(unsigned int)); + if (!py_bytes) goto limited_bad; + order_str = PyUnicode_FromString(little ? "little" : "big"); + if (!order_str) goto limited_bad; + arg_tuple = PyTuple_Pack(2, py_bytes, order_str); + if (!arg_tuple) goto limited_bad; + if (!is_unsigned) { + kwds = PyDict_New(); + if (!kwds) goto limited_bad; + if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; + } + result = PyObject_Call(from_bytes, arg_tuple, kwds); + limited_bad: + Py_XDECREF(kwds); + Py_XDECREF(arg_tuple); + Py_XDECREF(order_str); + Py_XDECREF(py_bytes); + Py_XDECREF(from_bytes); + return result; +#endif } } @@ -14353,8 +18184,34 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; +#if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); +#else + PyObject *from_bytes, *result = NULL; + PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; + from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); + if (!from_bytes) return NULL; + py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(long)); + if (!py_bytes) goto limited_bad; + order_str = PyUnicode_FromString(little ? "little" : "big"); + if (!order_str) goto limited_bad; + arg_tuple = PyTuple_Pack(2, py_bytes, order_str); + if (!arg_tuple) goto limited_bad; + if (!is_unsigned) { + kwds = PyDict_New(); + if (!kwds) goto limited_bad; + if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; + } + result = PyObject_Call(from_bytes, arg_tuple, kwds); + limited_bad: + Py_XDECREF(kwds); + Py_XDECREF(arg_tuple); + Py_XDECREF(order_str); + Py_XDECREF(py_bytes); + Py_XDECREF(from_bytes); + return result; +#endif } } @@ -14391,8 +18248,34 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_PY_LONG_LONG(unsigned P { int one = 1; int little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&value; +#if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 return _PyLong_FromByteArray(bytes, sizeof(unsigned PY_LONG_LONG), little, !is_unsigned); +#else + PyObject *from_bytes, *result = NULL; + PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; + from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); + if (!from_bytes) return NULL; + py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(unsigned PY_LONG_LONG)); + if (!py_bytes) goto limited_bad; + order_str = PyUnicode_FromString(little ? "little" : "big"); + if (!order_str) goto limited_bad; + arg_tuple = PyTuple_Pack(2, py_bytes, order_str); + if (!arg_tuple) goto limited_bad; + if (!is_unsigned) { + kwds = PyDict_New(); + if (!kwds) goto limited_bad; + if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; + } + result = PyObject_Call(from_bytes, arg_tuple, kwds); + limited_bad: + Py_XDECREF(kwds); + Py_XDECREF(arg_tuple); + Py_XDECREF(order_str); + Py_XDECREF(py_bytes); + Py_XDECREF(from_bytes); + return result; +#endif } } @@ -14409,7 +18292,7 @@ static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_As_unsigned_PY_LONG_LONG( const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { - if (sizeof(unsigned PY_LONG_LONG) < sizeof(long)) { + if ((sizeof(unsigned PY_LONG_LONG) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); @@ -14423,40 +18306,45 @@ static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_As_unsigned_PY_LONG_LONG( if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS - const digit* digits = ((PyLongObject*)x)->ob_digit; - switch (Py_SIZE(x)) { - case 0: return (unsigned PY_LONG_LONG) 0; - case 1: __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, digit, digits[0]) - case 2: - if (8 * sizeof(unsigned PY_LONG_LONG) > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned PY_LONG_LONG) >= 2 * PyLong_SHIFT) { - return (unsigned PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + if (unlikely(__Pyx_PyLong_IsNeg(x))) { + goto raise_neg_overflow; + } else if (__Pyx_PyLong_IsCompact(x)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) + } else { + const digit* digits = __Pyx_PyLong_Digits(x); + assert(__Pyx_PyLong_DigitCount(x) > 1); + switch (__Pyx_PyLong_DigitCount(x)) { + case 2: + if ((8 * sizeof(unsigned PY_LONG_LONG) > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned PY_LONG_LONG) >= 2 * PyLong_SHIFT)) { + return (unsigned PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + } } - } - break; - case 3: - if (8 * sizeof(unsigned PY_LONG_LONG) > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned PY_LONG_LONG) >= 3 * PyLong_SHIFT) { - return (unsigned PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + break; + case 3: + if ((8 * sizeof(unsigned PY_LONG_LONG) > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned PY_LONG_LONG) >= 3 * PyLong_SHIFT)) { + return (unsigned PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + } } - } - break; - case 4: - if (8 * sizeof(unsigned PY_LONG_LONG) > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned PY_LONG_LONG) >= 4 * PyLong_SHIFT) { - return (unsigned PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + break; + case 4: + if ((8 * sizeof(unsigned PY_LONG_LONG) > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned PY_LONG_LONG) >= 4 * PyLong_SHIFT)) { + return (unsigned PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + } } - } - break; + break; + } } #endif -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } @@ -14469,109 +18357,181 @@ static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_As_unsigned_PY_LONG_LONG( goto raise_neg_overflow; } #endif - if (sizeof(unsigned PY_LONG_LONG) <= sizeof(unsigned long)) { + if ((sizeof(unsigned PY_LONG_LONG) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(unsigned PY_LONG_LONG, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG - } else if (sizeof(unsigned PY_LONG_LONG) <= sizeof(unsigned PY_LONG_LONG)) { + } else if ((sizeof(unsigned PY_LONG_LONG) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(unsigned PY_LONG_LONG, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS - const digit* digits = ((PyLongObject*)x)->ob_digit; - switch (Py_SIZE(x)) { - case 0: return (unsigned PY_LONG_LONG) 0; - case -1: __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, sdigit, (sdigit) (-(sdigit)digits[0])) - case 1: __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, digit, +digits[0]) - case -2: - if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { - return (unsigned PY_LONG_LONG) (((unsigned PY_LONG_LONG)-1)*(((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + if (__Pyx_PyLong_IsCompact(x)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) + } else { + const digit* digits = __Pyx_PyLong_Digits(x); + assert(__Pyx_PyLong_DigitCount(x) > 1); + switch (__Pyx_PyLong_SignedDigitCount(x)) { + case -2: + if ((8 * sizeof(unsigned PY_LONG_LONG) - 1 > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT)) { + return (unsigned PY_LONG_LONG) (((unsigned PY_LONG_LONG)-1)*(((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + } } - } - break; - case 2: - if (8 * sizeof(unsigned PY_LONG_LONG) > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { - return (unsigned PY_LONG_LONG) ((((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + break; + case 2: + if ((8 * sizeof(unsigned PY_LONG_LONG) > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT)) { + return (unsigned PY_LONG_LONG) ((((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + } } - } - break; - case -3: - if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { - return (unsigned PY_LONG_LONG) (((unsigned PY_LONG_LONG)-1)*(((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + break; + case -3: + if ((8 * sizeof(unsigned PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT)) { + return (unsigned PY_LONG_LONG) (((unsigned PY_LONG_LONG)-1)*(((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + } } - } - break; - case 3: - if (8 * sizeof(unsigned PY_LONG_LONG) > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { - return (unsigned PY_LONG_LONG) ((((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + break; + case 3: + if ((8 * sizeof(unsigned PY_LONG_LONG) > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT)) { + return (unsigned PY_LONG_LONG) ((((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + } } - } - break; - case -4: - if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { - return (unsigned PY_LONG_LONG) (((unsigned PY_LONG_LONG)-1)*(((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + break; + case -4: + if ((8 * sizeof(unsigned PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT)) { + return (unsigned PY_LONG_LONG) (((unsigned PY_LONG_LONG)-1)*(((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + } } - } - break; - case 4: - if (8 * sizeof(unsigned PY_LONG_LONG) > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { - return (unsigned PY_LONG_LONG) ((((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + break; + case 4: + if ((8 * sizeof(unsigned PY_LONG_LONG) > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(unsigned PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT)) { + return (unsigned PY_LONG_LONG) ((((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]))); + } } - } - break; + break; + } } #endif - if (sizeof(unsigned PY_LONG_LONG) <= sizeof(long)) { + if ((sizeof(unsigned PY_LONG_LONG) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(unsigned PY_LONG_LONG, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG - } else if (sizeof(unsigned PY_LONG_LONG) <= sizeof(PY_LONG_LONG)) { + } else if ((sizeof(unsigned PY_LONG_LONG) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(unsigned PY_LONG_LONG, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else unsigned PY_LONG_LONG val; PyObject *v = __Pyx_PyNumber_IntOrLong(x); - #if PY_MAJOR_VERSION < 3 +#if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } - #endif +#endif if (likely(v)) { + int ret = -1; +#if PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); + ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); +#else + PyObject *stepval = NULL, *mask = NULL, *shift = NULL; + int bits, remaining_bits, is_negative = 0; + long idigit; + int chunk_size = (sizeof(long) < 8) ? 30 : 62; + if (unlikely(!PyLong_CheckExact(v))) { + PyObject *tmp = v; + v = PyNumber_Long(v); + assert(PyLong_CheckExact(v)); + Py_DECREF(tmp); + if (unlikely(!v)) return (unsigned PY_LONG_LONG) -1; + } +#if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + if (Py_SIZE(x) == 0) + return (unsigned PY_LONG_LONG) 0; + is_negative = Py_SIZE(x) < 0; +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (unsigned PY_LONG_LONG) -1; + is_negative = result == 1; + } +#endif + if (is_unsigned && unlikely(is_negative)) { + goto raise_neg_overflow; + } else if (is_negative) { + stepval = PyNumber_Invert(v); + if (unlikely(!stepval)) + return (unsigned PY_LONG_LONG) -1; + } else { + stepval = __Pyx_NewRef(v); + } + val = (unsigned PY_LONG_LONG) 0; + mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; + shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; + for (bits = 0; bits < (int) sizeof(unsigned PY_LONG_LONG) * 8 - chunk_size; bits += chunk_size) { + PyObject *tmp, *digit; + digit = PyNumber_And(stepval, mask); + if (unlikely(!digit)) goto done; + idigit = PyLong_AsLong(digit); + Py_DECREF(digit); + if (unlikely(idigit < 0)) goto done; + tmp = PyNumber_Rshift(stepval, shift); + if (unlikely(!tmp)) goto done; + Py_DECREF(stepval); stepval = tmp; + val |= ((unsigned PY_LONG_LONG) idigit) << bits; + #if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + if (Py_SIZE(stepval) == 0) + goto unpacking_done; + #endif + } + idigit = PyLong_AsLong(stepval); + if (unlikely(idigit < 0)) goto done; + remaining_bits = ((int) sizeof(unsigned PY_LONG_LONG) * 8) - bits - (is_unsigned ? 0 : 1); + if (unlikely(idigit >= (1L << remaining_bits))) + goto raise_overflow; + val |= ((unsigned PY_LONG_LONG) idigit) << bits; + #if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + unpacking_done: + #endif + if (!is_unsigned) { + if (unlikely(val & (((unsigned PY_LONG_LONG) 1) << (sizeof(unsigned PY_LONG_LONG) * 8 - 1)))) + goto raise_overflow; + if (is_negative) + val = ~val; + } + ret = 0; + done: + Py_XDECREF(shift); + Py_XDECREF(mask); + Py_XDECREF(stepval); +#endif Py_DECREF(v); if (likely(!ret)) return val; } -#endif return (unsigned PY_LONG_LONG) -1; } } else { @@ -14592,6 +18552,22 @@ static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_As_unsigned_PY_LONG_LONG( return (unsigned PY_LONG_LONG) -1; } +/* FormatTypeName */ +#if CYTHON_COMPILING_IN_LIMITED_API +static __Pyx_TypeName +__Pyx_PyType_GetName(PyTypeObject* tp) +{ + PyObject *name = __Pyx_PyObject_GetAttrStr((PyObject *)tp, + __pyx_n_s_name); + if (unlikely(name == NULL) || unlikely(!PyUnicode_Check(name))) { + PyErr_Clear(); + Py_XDECREF(name); + name = __Pyx_NewRef(__pyx_n_s__25); + } + return name; +} +#endif + /* CIntFromPy */ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC @@ -14605,7 +18581,7 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { - if (sizeof(long) < sizeof(long)) { + if ((sizeof(long) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); @@ -14619,40 +18595,45 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { if (likely(PyLong_Check(x))) { if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS - const digit* digits = ((PyLongObject*)x)->ob_digit; - switch (Py_SIZE(x)) { - case 0: return (long) 0; - case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0]) - case 2: - if (8 * sizeof(long) > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) { - return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + if (unlikely(__Pyx_PyLong_IsNeg(x))) { + goto raise_neg_overflow; + } else if (__Pyx_PyLong_IsCompact(x)) { + __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) + } else { + const digit* digits = __Pyx_PyLong_Digits(x); + assert(__Pyx_PyLong_DigitCount(x) > 1); + switch (__Pyx_PyLong_DigitCount(x)) { + case 2: + if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(long) >= 2 * PyLong_SHIFT)) { + return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } } - } - break; - case 3: - if (8 * sizeof(long) > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) { - return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + break; + case 3: + if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(long) >= 3 * PyLong_SHIFT)) { + return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } } - } - break; - case 4: - if (8 * sizeof(long) > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) { - return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + break; + case 4: + if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(long) >= 4 * PyLong_SHIFT)) { + return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } } - } - break; + break; + } } #endif -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } @@ -14665,109 +18646,181 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { goto raise_neg_overflow; } #endif - if (sizeof(long) <= sizeof(unsigned long)) { + if ((sizeof(long) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG - } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + } else if ((sizeof(long) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS - const digit* digits = ((PyLongObject*)x)->ob_digit; - switch (Py_SIZE(x)) { - case 0: return (long) 0; - case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0])) - case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0]) - case -2: - if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { - return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + if (__Pyx_PyLong_IsCompact(x)) { + __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) + } else { + const digit* digits = __Pyx_PyLong_Digits(x); + assert(__Pyx_PyLong_DigitCount(x) > 1); + switch (__Pyx_PyLong_SignedDigitCount(x)) { + case -2: + if ((8 * sizeof(long) - 1 > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { + return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } } - } - break; - case 2: - if (8 * sizeof(long) > 1 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { - return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + break; + case 2: + if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { + return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } } - } - break; - case -3: - if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { - return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + break; + case -3: + if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { + return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } } - } - break; - case 3: - if (8 * sizeof(long) > 2 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { - return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + break; + case 3: + if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { + return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } } - } - break; - case -4: - if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { - return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + break; + case -4: + if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { + return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } } - } - break; - case 4: - if (8 * sizeof(long) > 3 * PyLong_SHIFT) { - if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) - } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { - return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + break; + case 4: + if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { + if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { + return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } } - } - break; + break; + } } #endif - if (sizeof(long) <= sizeof(long)) { + if ((sizeof(long) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG - } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + } else if ((sizeof(long) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { -#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) - PyErr_SetString(PyExc_RuntimeError, - "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); -#else long val; PyObject *v = __Pyx_PyNumber_IntOrLong(x); - #if PY_MAJOR_VERSION < 3 +#if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; v = PyNumber_Long(tmp); Py_DECREF(tmp); } - #endif +#endif if (likely(v)) { + int ret = -1; +#if PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; - int ret = _PyLong_AsByteArray((PyLongObject *)v, - bytes, sizeof(val), - is_little, !is_unsigned); + ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); +#else + PyObject *stepval = NULL, *mask = NULL, *shift = NULL; + int bits, remaining_bits, is_negative = 0; + long idigit; + int chunk_size = (sizeof(long) < 8) ? 30 : 62; + if (unlikely(!PyLong_CheckExact(v))) { + PyObject *tmp = v; + v = PyNumber_Long(v); + assert(PyLong_CheckExact(v)); + Py_DECREF(tmp); + if (unlikely(!v)) return (long) -1; + } +#if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + if (Py_SIZE(x) == 0) + return (long) 0; + is_negative = Py_SIZE(x) < 0; +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (long) -1; + is_negative = result == 1; + } +#endif + if (is_unsigned && unlikely(is_negative)) { + goto raise_neg_overflow; + } else if (is_negative) { + stepval = PyNumber_Invert(v); + if (unlikely(!stepval)) + return (long) -1; + } else { + stepval = __Pyx_NewRef(v); + } + val = (long) 0; + mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; + shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; + for (bits = 0; bits < (int) sizeof(long) * 8 - chunk_size; bits += chunk_size) { + PyObject *tmp, *digit; + digit = PyNumber_And(stepval, mask); + if (unlikely(!digit)) goto done; + idigit = PyLong_AsLong(digit); + Py_DECREF(digit); + if (unlikely(idigit < 0)) goto done; + tmp = PyNumber_Rshift(stepval, shift); + if (unlikely(!tmp)) goto done; + Py_DECREF(stepval); stepval = tmp; + val |= ((long) idigit) << bits; + #if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + if (Py_SIZE(stepval) == 0) + goto unpacking_done; + #endif + } + idigit = PyLong_AsLong(stepval); + if (unlikely(idigit < 0)) goto done; + remaining_bits = ((int) sizeof(long) * 8) - bits - (is_unsigned ? 0 : 1); + if (unlikely(idigit >= (1L << remaining_bits))) + goto raise_overflow; + val |= ((long) idigit) << bits; + #if CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030B0000 + unpacking_done: + #endif + if (!is_unsigned) { + if (unlikely(val & (((long) 1) << (sizeof(long) * 8 - 1)))) + goto raise_overflow; + if (is_negative) + val = ~val; + } + ret = 0; + done: + Py_XDECREF(shift); + Py_XDECREF(mask); + Py_XDECREF(stepval); +#endif Py_DECREF(v); if (likely(!ret)) return val; } -#endif return (long) -1; } } else { @@ -14792,7 +18845,7 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { #if CYTHON_COMPILING_IN_CPYTHON static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) { while (a) { - a = a->tp_base; + a = __Pyx_PyType_GetSlot(a, tp_base, PyTypeObject*); if (a == b) return 1; } @@ -14813,6 +18866,22 @@ static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) { } return __Pyx_InBases(a, b); } +static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b) { + PyObject *mro; + if (cls == a || cls == b) return 1; + mro = cls->tp_mro; + if (likely(mro)) { + Py_ssize_t i, n; + n = PyTuple_GET_SIZE(mro); + for (i = 0; i < n; i++) { + PyObject *base = PyTuple_GET_ITEM(mro, i); + if (base == (PyObject *)a || base == (PyObject *)b) + return 1; + } + return 0; + } + return __Pyx_InBases(cls, a) || __Pyx_InBases(cls, b); +} #if PY_MAJOR_VERSION == 2 static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) { PyObject *exception, *value, *tb; @@ -14837,11 +18906,11 @@ static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc } #else static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) { - int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0; - if (!res) { - res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2); + if (exc_type1) { + return __Pyx_IsAnySubtype2((PyTypeObject*)err, (PyTypeObject*)exc_type1, (PyTypeObject*)exc_type2); + } else { + return __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2); } - return res; } #endif static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { @@ -14889,47 +18958,78 @@ static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObj #endif /* CheckBinaryVersion */ -static int __Pyx_check_binary_version(void) { - char ctversion[5]; - int same=1, i, found_dot; - const char* rt_from_call = Py_GetVersion(); - PyOS_snprintf(ctversion, 5, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); - found_dot = 0; - for (i = 0; i < 4; i++) { - if (!ctversion[i]) { - same = (rt_from_call[i] < '0' || rt_from_call[i] > '9'); - break; +static unsigned long __Pyx_get_runtime_version(void) { +#if __PYX_LIMITED_VERSION_HEX >= 0x030B00A4 + return Py_Version & ~0xFFUL; +#else + const char* rt_version = Py_GetVersion(); + unsigned long version = 0; + unsigned long factor = 0x01000000UL; + unsigned int digit = 0; + int i = 0; + while (factor) { + while ('0' <= rt_version[i] && rt_version[i] <= '9') { + digit = digit * 10 + (unsigned int) (rt_version[i] - '0'); + ++i; } - if (rt_from_call[i] != ctversion[i]) { - same = 0; + version += factor * digit; + if (rt_version[i] != '.') break; - } + digit = 0; + factor >>= 8; + ++i; } - if (!same) { - char rtversion[5] = {'\0'}; + return version; +#endif +} +static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer) { + const unsigned long MAJOR_MINOR = 0xFFFF0000UL; + if ((rt_version & MAJOR_MINOR) == (ct_version & MAJOR_MINOR)) + return 0; + if (likely(allow_newer && (rt_version & MAJOR_MINOR) > (ct_version & MAJOR_MINOR))) + return 1; + { char message[200]; - for (i=0; i<4; ++i) { - if (rt_from_call[i] == '.') { - if (found_dot) break; - found_dot = 1; - } else if (rt_from_call[i] < '0' || rt_from_call[i] > '9') { - break; - } - rtversion[i] = rt_from_call[i]; - } PyOS_snprintf(message, sizeof(message), - "compiletime version %s of module '%.100s' " - "does not match runtime version %s", - ctversion, __Pyx_MODULE_NAME, rtversion); + "compile time Python version %d.%d " + "of module '%.100s' " + "%s " + "runtime version %d.%d", + (int) (ct_version >> 24), (int) ((ct_version >> 16) & 0xFF), + __Pyx_MODULE_NAME, + (allow_newer) ? "was newer than" : "does not match", + (int) (rt_version >> 24), (int) ((rt_version >> 16) & 0xFF) + ); return PyErr_WarnEx(NULL, message, 1); } - return 0; } /* InitStrings */ +#if PY_MAJOR_VERSION >= 3 +static int __Pyx_InitString(__Pyx_StringTabEntry t, PyObject **str) { + if (t.is_unicode | t.is_str) { + if (t.intern) { + *str = PyUnicode_InternFromString(t.s); + } else if (t.encoding) { + *str = PyUnicode_Decode(t.s, t.n - 1, t.encoding, NULL); + } else { + *str = PyUnicode_FromStringAndSize(t.s, t.n - 1); + } + } else { + *str = PyBytes_FromStringAndSize(t.s, t.n - 1); + } + if (!*str) + return -1; + if (PyObject_Hash(*str) == -1) + return -1; + return 0; +} +#endif static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { - #if PY_MAJOR_VERSION < 3 + #if PY_MAJOR_VERSION >= 3 + __Pyx_InitString(*t, t->p); + #else if (t->is_unicode) { *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); } else if (t->intern) { @@ -14937,30 +19037,34 @@ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { } else { *t->p = PyString_FromStringAndSize(t->s, t->n - 1); } - #else - if (t->is_unicode | t->is_str) { - if (t->intern) { - *t->p = PyUnicode_InternFromString(t->s); - } else if (t->encoding) { - *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); - } else { - *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); - } - } else { - *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); - } - #endif if (!*t->p) return -1; if (PyObject_Hash(*t->p) == -1) return -1; + #endif ++t; } return 0; } +#include +static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s) { + size_t len = strlen(s); + if (unlikely(len > (size_t) PY_SSIZE_T_MAX)) { + PyErr_SetString(PyExc_OverflowError, "byte string is too long"); + return -1; + } + return (Py_ssize_t) len; +} static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { - return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); + Py_ssize_t len = __Pyx_ssize_strlen(c_str); + if (unlikely(len < 0)) return NULL; + return __Pyx_PyUnicode_FromStringAndSize(c_str, len); +} +static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char* c_str) { + Py_ssize_t len = __Pyx_ssize_strlen(c_str); + if (unlikely(len < 0)) return NULL; + return PyByteArray_FromStringAndSize(c_str, len); } static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; @@ -15015,7 +19119,7 @@ static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ return __Pyx_PyUnicode_AsStringAndSize(o, length); } else #endif -#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) +#if (!CYTHON_COMPILING_IN_PYPY && !CYTHON_COMPILING_IN_LIMITED_API) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); @@ -15044,22 +19148,26 @@ static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) { return retval; } static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) { + __Pyx_TypeName result_type_name = __Pyx_PyType_GetName(Py_TYPE(result)); #if PY_MAJOR_VERSION >= 3 if (PyLong_Check(result)) { if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1, - "__int__ returned non-int (type %.200s). " - "The ability to return an instance of a strict subclass of int " - "is deprecated, and may be removed in a future version of Python.", - Py_TYPE(result)->tp_name)) { + "__int__ returned non-int (type " __Pyx_FMT_TYPENAME "). " + "The ability to return an instance of a strict subclass of int is deprecated, " + "and may be removed in a future version of Python.", + result_type_name)) { + __Pyx_DECREF_TypeName(result_type_name); Py_DECREF(result); return NULL; } + __Pyx_DECREF_TypeName(result_type_name); return result; } #endif PyErr_Format(PyExc_TypeError, - "__%.4s__ returned non-%.4s (type %.200s)", - type_name, type_name, Py_TYPE(result)->tp_name); + "__%.4s__ returned non-%.4s (type " __Pyx_FMT_TYPENAME ")", + type_name, type_name, result_type_name); + __Pyx_DECREF_TypeName(result_type_name); Py_DECREF(result); return NULL; } @@ -15125,13 +19233,11 @@ static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { #endif if (likely(PyLong_CheckExact(b))) { #if CYTHON_USE_PYLONG_INTERNALS - const digit* digits = ((PyLongObject*)b)->ob_digit; - const Py_ssize_t size = Py_SIZE(b); - if (likely(__Pyx_sst_abs(size) <= 1)) { - ival = likely(size) ? digits[0] : 0; - if (size == -1) ival = -ival; - return ival; + if (likely(__Pyx_PyLong_IsCompact(b))) { + return __Pyx_PyLong_CompactValue(b); } else { + const digit* digits = __Pyx_PyLong_Digits(b); + const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(b); switch (size) { case 2: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { @@ -15199,4 +19305,12 @@ static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { } +/* #### Code section: utility_code_pragmas_end ### */ +#ifdef _MSC_VER +#pragma warning( pop ) +#endif + + + +/* #### Code section: end ### */ #endif /* Py_PYTHON_H */ diff --git a/nanovar/nv_bam_parser.pyx b/nanovar/nv_bam_parser.pyx index cd7c94a..92e38c4 100644 --- a/nanovar/nv_bam_parser.pyx +++ b/nanovar/nv_bam_parser.pyx @@ -107,9 +107,11 @@ def bam_parse(bam, unsigned int minlen, float splitpct, unsigned int minalign, s if repeat_dict[sup]: pass except KeyError: - repeat_dict[sup] = '' - fasta.write('>' + sup + '\n' + fail_qual_seq[sup] + '\n') - rlendict[sup] = fail_qual_len[sup] + # Some supplementary alignments do not have primary alignments (in the case of a subset BAM), thus sequence not found and read sequence excluded + if sup in fail_qual_seq: + repeat_dict[sup] = '' + fasta.write('>' + sup + '\n' + fail_qual_seq[sup] + '\n') + rlendict[sup] = fail_qual_len[sup] fasta.close() fasta2.close() total_subdata, total_lines, contig_collect, total_out, detect_out = [], [], [], [], [] diff --git a/nanovar/version.py b/nanovar/version.py index f49459c..51bbb3f 100644 --- a/nanovar/version.py +++ b/nanovar/version.py @@ -1 +1 @@ -__version__ = "1.6.1" +__version__ = "1.6.2"