Who uses Cytoscape.js?

[maxkfranz]

It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

• Organisation name
• Link to organisation site

[danieljue]

DARPA XDATA / Sotera Defense Solutions, Inc.
http://sotera.github.io/graphene/
http://www.darpa.mil/opencatalog/xdata.html

[maxkfranz]

Pathway Commons
http://www.pathwaycommons.org

[maxkfranz]

NDEx
http://home.ndexbio.org/

[maxkfranz]

Later:

GeneMANIA
http://genemania.org

[keiono]

Also, we are using it:

CyNetShare

http://cynetshare.ucsd.edu/

[ktei]

InfoTrack
http://www.infotrack.com.au/

[starkfree]

BioGRID
http://thebiogrid.org/
Example: http://thebiogrid.org/33257/network/saccharomyces-cerevisiae/msb2.html

[ghost]

dSysMap
http://dsysmap.irbbarcelona.org

[EDreven]

video instruction.
http://www.kartoteka.ru/vizual
The module itself is not free.

[keiono]

It's still in beta, but our embedded Jupyter (IPython) Notebook widget uses cytoscape.js:

https://github.com/idekerlab/py2cytoscape

[maxkfranz]

Intermine : University of Cambridge : http://intermine.org/

https://twitter.com/intermineorg/status/664410088623489024

[maxkfranz]

ARAS PLM : http://www.aras.com/

https://twitter.com/yoannmaingon/status/658042200165588992

[maxruby]

Visual Interaction GmbH: http://www.mygaze.com

[patbuergin-zz]

GIGRAPH – Network Visualization for Excel
https://gigraph.io
(non-commercial, private project)

[mabossert]

I use at Cray inc. as part of a front-end analytics application run on our supercomputers.
http://www.cray.com

[danmaclean]

PINet - http://pinet.tsl.ac.uk
Tool for The Sainsbury Laboratory network analyses

[YMA-MDL]

Ganister - http://www.ganister.eu/
Configuration management solution for Electronic/HighTech/Defense&Security companies

[maxkfranz]

Elsevier
https://www.elsevier.com/books-and-journals/content-innovation/interactive-network-viewer

[AoDev]

Trace: https://trace.risingstack.com/

Microservices Visualized
Anomaly detection, distributed transaction tracking and process monitoring for your services.

[michalhabala]

Graphlytic - Graph BI platform
http://graphlytic.sk/

[jfreyreg]

Abasy Atlas: A comprehensive atlas of systems, global network properties, and system-level elements shaping regulatory networks across bacteria
http://abasy.ccg.unam.mx

[diegoalonso78]

APID - Agile Protein Interactomes DataServer
http://apid.dep.usal.es
Example: http://cicblade.dep.usal.es:8080/APID/InteractionsNetworkApp.action?protein=P26951

[narseo]

ICSI Haystack Project to show tracking activity on mobile apps:

https://haystack.mobi/panopticon/

[Malalama]

A friend and I have been working on Musicalized, a Family Tree of All Music Genres:

http://en.musicalized.com/full

Happy to receive some feedback!

[lkarlslund]

My project Adalanche uses Cytoscape.js for visualizing attack paths in Active Directory (and other) systems.

https://github.com/lkarlslund/Adalanche

[sveinp]

T-rank uses Cytoscape for visualizing shareholder networks.

[anwaarulmustafa]

Organization Name: DGB Technologies
Website Link: https://www.dgbtek.com

[marlondumas]

Organization Name: Apromore
Website Link: https://apromore.com/
Example visualization: https://documentation.apromore.org/_images/220.png

[atakanahmetce]

Organization Name: CanSyL
Website Link: https://crossbar.kansil.org/
Example: https://crossbar.kansil.org/covid19_simplified.php

[mreichhoff]

HanziGraph (an educational tool for learners of Chinese and Japanese) uses CytoscapeJS. It's been recommended in a few places; also see the demo.

Website Link: https://hanzigraph.com
Repo: https://github.com/mreichhoff/HanziGraph

Thanks for the great library!

[fsmunoz]

The Budō Lineage Tree is a project I've just announced, and whose user-facing component is entirely based on Cytoscape.js . It parses a YAML based database (open to community input) of martial arts practitioners and their teachers and styles, and create a CYJS file, which is then visualised through the site using Cytoscape.js

Website: https://budotree.judoc.org/
Organisation: Frederico Muñoz, The Judo Documentation Project

[leecalcote]

Organization: Layer5
Project: Meshery

Thanks for all the work you do, @maxkfranz

[paulvb]

Organization: Companytracker
Website: https://www.companytracker.be/en

We use it to visualise relations between belgian businesses.

Thanks a lot for the great library, it covered everything that we needed!

[artturimatias]

Organization: Open Science Centre of University of Jyväskylä
Website: https://osc.jyu.fi/en
KuKaKo is a visual, open source tool for communicating (sometimes messy) connections between people and things in community. Cytoscape.js is used for rendering organisation graph.
github: https://github.com/OSC-JYU/KuKaKo

Thanks!

[sidharthv96]

Organization: Mermaid-JS
Project: Mermaid

We currently use Cytoscape for Mindmaps, but considering adopting it as the default layout engine to replace dagre.

[ExtReMLapin]

Arcade DB uses it for it's graph database

[ShriramVaradachari]

It would be nice to include a list of organisations that use Cytoscape.js in the docs.

Please include:

• Organisation name
• Link to organisation site

Organization - Stradegi Solutions
Link to website - www.nflows.com

[gxara]

NodeLand
Link to website - nodeland.io

It is a SaaS for note-taking and mind-mapping

[sighrobot]

Organization: Orchidex
Website: https://orchidex.org

We use Cytoscape.js + dagre for ancestry visualizations; also currently experimenting with other layouts for future visualizations