diff --git a/documentation/demos/fcose-gene/code.js b/documentation/demos/fcose-gene/code.js
new file mode 100644
index 0000000000..02c23702d0
--- /dev/null
+++ b/documentation/demos/fcose-gene/code.js
@@ -0,0 +1,247 @@
+/* global Promise, fetch, window, cytoscape, document, tippy, _ */
+
+Promise.all([
+  fetch('cy-style.json')
+    .then(function(res) {
+      return res.json();
+    }),
+  fetch('data.json')
+    .then(function(res) {
+      return res.json();
+    })
+])
+  .then(function(dataArray) {
+    var h = function(tag, attrs, children){
+      var el = document.createElement(tag);
+
+      Object.keys(attrs).forEach(function(key){
+        var val = attrs[key];
+
+        el.setAttribute(key, val);
+      });
+
+      children.forEach(function(child){
+        el.appendChild(child);
+      });
+
+      return el;
+    };
+
+    var t = function(text){
+      var el = document.createTextNode(text);
+
+      return el;
+    };
+
+    var $ = document.querySelector.bind(document);
+
+    var cy = window.cy = cytoscape({
+      container: document.getElementById('cy'),
+      style: dataArray[0],
+      elements: dataArray[1],
+      layout: { name: 'grid' } // fixed, non-equal positions ensure deterministic fcose results
+    });
+
+    // values modified by sliders
+    var nodeRepulsionVal = 4500;
+    var idealEdgeLengthVal = 1;
+
+    var params = {
+      name: 'fcose',
+      nodeRepulsion: n => nodeRepulsionVal,
+      idealEdgeLength: e => idealEdgeLengthVal / e.data('weight'),
+      animate: true,
+      randomize: false
+    };
+    var layout = makeLayout({ animate: false });
+
+    layout.run();
+
+    var $btnParam = h('div', {
+      'class': 'param'
+    }, []);
+
+    var $config = $('#config');
+
+    $config.appendChild( $btnParam );
+
+    var sliders = [
+      {
+        label: 'Edge length',
+        update: sliderVal => idealEdgeLengthVal = sliderVal,
+        initVal: idealEdgeLengthVal,
+        min: 1,
+        max: 5,
+        step: 0.1
+      },
+
+      {
+        label: 'Node repulsion',
+        update: sliderVal => nodeRepulsionVal = sliderVal,
+        initVal: nodeRepulsionVal,
+        min: 4500,
+        max: 1000000,
+        step: 1
+      }
+    ];
+
+    var buttons = [
+      {
+        label: h('span', { 'class': 'fa fa-random' }, []),
+        layoutOpts: {
+          randomize: true,
+          animate: true
+        },
+        tooltip: 'Randomise'
+      },
+
+      {
+        label: h('span', { 'class': 'fa fa-play' }, []),
+        layoutOpts: {
+          randomize: false,
+          animate: true
+        },
+        tooltip: 'Step'
+      }
+    ];
+
+    sliders.forEach( makeSlider );
+
+    buttons.forEach( makeButton );
+
+    function makeLayout( opts ){
+      params.randomize = (opts || {}).randomize || false;
+
+      for( var i in opts ){
+        params[i] = opts[i];
+      }
+
+      return cy.layout( Object.assign({}, params) );
+    }
+
+    function makeSlider( opts ){
+      var $input = h('input', {
+        id: 'slider-'+opts.param,
+        type: 'range',
+        min: opts.min,
+        max: opts.max,
+        step: opts.step,
+        value: opts.initVal,
+        'class': 'slider'
+      }, []);
+
+      var $param = h('div', { 'class': 'param' }, []);
+
+      var $label = h('label', { 'class': 'label label-default', for: 'slider-'+opts.param }, [ t(opts.label) ]);
+
+      $param.appendChild( $label );
+      $param.appendChild( $input );
+
+      $config.appendChild( $param );
+
+      var update = _.throttle(function(){
+        opts.update(parseFloat($input.value));
+
+        layout.stop();
+        layout = makeLayout({ animate: true });
+        layout.run();
+      }, 1000/4, { trailing: true });
+
+      $input.addEventListener('input', update);
+      $input.addEventListener('change', update);
+    }
+
+    function makeButton( opts ){
+      var $button = h('button', { 'class': 'btn btn-default', title: opts.tooltip }, [ opts.label ]);
+
+      $btnParam.appendChild( $button );
+
+      $button.addEventListener('click', function(){
+        layout.stop();
+
+        layout = makeLayout( opts.layoutOpts );
+        layout.run();
+      });
+
+      return tippy( $button, {
+        content: opts.tooltip,
+        arrow: true,
+        placement: 'right'
+      } );
+    }
+
+    var makeTippy = function(node, html){
+      return tippy( node.popperRef(), {
+        html: html,
+        trigger: 'manual',
+        arrow: true,
+        placement: 'bottom',
+        hideOnClick: false,
+        interactive: true
+      } ).tooltips[0];
+    };
+
+    var hideTippy = function(node){
+      var tippy = node.data('tippy');
+
+      if(tippy != null){
+        tippy.hide();
+      }
+    };
+
+    var hideAllTippies = function(){
+      cy.nodes().forEach(hideTippy);
+    };
+
+    cy.on('tap', function(e){
+      if(e.target === cy){
+        hideAllTippies();
+      }
+    });
+
+    cy.on('tap', 'edge', function(e){
+      hideAllTippies();
+    });
+
+    cy.on('zoom pan', function(e){
+      hideAllTippies();
+    });
+
+    cy.nodes().forEach(function(n){
+      var g = n.data('name');
+
+      var $links = [
+        {
+          name: 'GeneCard',
+          url: 'http://www.genecards.org/cgi-bin/carddisp.pl?gene=' + g
+        },
+        {
+          name: 'UniProt search',
+          url: 'http://www.uniprot.org/uniprot/?query='+ g +'&fil=organism%3A%22Homo+sapiens+%28Human%29+%5B9606%5D%22&sort=score'
+        },
+        {
+          name: 'GeneMANIA',
+          url: 'http://genemania.org/search/human/' + g
+        }
+      ].map(function( link ){
+        return h('a', { target: '_blank', href: link.url, 'class': 'tip-link' }, [ t(link.name) ]);
+      });
+
+      var tippy = makeTippy(n, h('div', {}, $links));
+
+      n.data('tippy', tippy);
+
+      n.on('click', function(e){
+        tippy.show();
+
+        cy.nodes().not(n).forEach(hideTippy);
+      });
+    });
+
+    $('#config-toggle').addEventListener('click', function(){
+      $('body').classList.toggle('config-closed');
+
+      cy.resize();
+    });
+
+  });
diff --git a/documentation/demos/fcose-gene/cy-style.json b/documentation/demos/fcose-gene/cy-style.json
new file mode 100644
index 0000000000..c84be23f36
--- /dev/null
+++ b/documentation/demos/fcose-gene/cy-style.json
@@ -0,0 +1,144 @@
+[{
+  "selector": "core",
+  "style": {
+    "selection-box-color": "#AAD8FF",
+    "selection-box-border-color": "#8BB0D0",
+    "selection-box-opacity": "0.5"
+  }
+}, {
+  "selector": "node",
+  "style": {
+    "width": "mapData(score, 0, 0.006769776522008331, 20, 60)",
+    "height": "mapData(score, 0, 0.006769776522008331, 20, 60)",
+    "content": "data(name)",
+    "font-size": "12px",
+    "text-valign": "center",
+    "text-halign": "center",
+    "background-color": "#555",
+    "text-outline-color": "#555",
+    "text-outline-width": "2px",
+    "color": "#fff",
+    "overlay-padding": "6px",
+    "z-index": "10"
+  }
+}, {
+  "selector": "node[?attr]",
+  "style": {
+    "shape": "rectangle",
+    "background-color": "#aaa",
+    "text-outline-color": "#aaa",
+    "width": "16px",
+    "height": "16px",
+    "font-size": "6px",
+    "z-index": "1"
+  }
+}, {
+  "selector": "node[?query]",
+  "style": {
+    "background-clip": "none",
+    "background-fit": "contain"
+  }
+}, {
+  "selector": "node:selected",
+  "style": {
+    "border-width": "6px",
+    "border-color": "#AAD8FF",
+    "border-opacity": "0.5",
+    "background-color": "#77828C",
+    "text-outline-color": "#77828C"
+  }
+}, {
+  "selector": "edge",
+  "style": {
+    "curve-style": "haystack",
+    "haystack-radius": "0.5",
+    "opacity": "0.4",
+    "line-color": "#bbb",
+    "width": "mapData(weight, 0, 1, 1, 8)",
+    "overlay-padding": "3px"
+  }
+}, {
+  "selector": "node.unhighlighted",
+  "style": {
+    "opacity": "0.2"
+  }
+}, {
+  "selector": "edge.unhighlighted",
+  "style": {
+    "opacity": "0.05"
+  }
+}, {
+  "selector": ".highlighted",
+  "style": {
+    "z-index": "999999"
+  }
+}, {
+  "selector": "node.highlighted",
+  "style": {
+    "border-width": "6px",
+    "border-color": "#AAD8FF",
+    "border-opacity": "0.5",
+    "background-color": "#394855",
+    "text-outline-color": "#394855"
+  }
+}, {
+  "selector": "edge.filtered",
+  "style": {
+    "opacity": "0"
+  }
+}, {
+  "selector": "edge[group=\"coexp\"]",
+  "style": {
+    "line-color": "#d0b7d5"
+  }
+}, {
+  "selector": "edge[group=\"coloc\"]",
+  "style": {
+    "line-color": "#a0b3dc"
+  }
+}, {
+  "selector": "edge[group=\"gi\"]",
+  "style": {
+    "line-color": "#90e190"
+  }
+}, {
+  "selector": "edge[group=\"path\"]",
+  "style": {
+    "line-color": "#9bd8de"
+  }
+}, {
+  "selector": "edge[group=\"pi\"]",
+  "style": {
+    "line-color": "#eaa2a2"
+  }
+}, {
+  "selector": "edge[group=\"predict\"]",
+  "style": {
+    "line-color": "#f6c384"
+  }
+}, {
+  "selector": "edge[group=\"spd\"]",
+  "style": {
+    "line-color": "#dad4a2"
+  }
+}, {
+  "selector": "edge[group=\"spd_attr\"]",
+  "style": {
+    "line-color": "#D0D0D0"
+  }
+}, {
+  "selector": "edge[group=\"reg\"]",
+  "style": {
+    "line-color": "#D0D0D0"
+  }
+}, {
+  "selector": "edge[group=\"reg_attr\"]",
+  "style": {
+    "line-color": "#D0D0D0"
+  }
+}, {
+  "selector": "edge[group=\"user\"]",
+  "style": {
+    "line-color": "#f0ec86"
+  }
+}]
diff --git a/documentation/demos/fcose-gene/data.json b/documentation/demos/fcose-gene/data.json
new file mode 100644
index 0000000000..8b750a6753
--- /dev/null
+++ b/documentation/demos/fcose-gene/data.json
@@ -0,0 +1,12895 @@
+[{
+  "data": {
+    "id": "605755",
+    "idInt": 605755,
+    "name": "PCNA",
+    "score": 0.006769776522008331,
+    "query": true,
+    "gene": true
+  },
+  "position": {
+    "x": 481.0169597039117,
+    "y": 384.8210888234145
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn10273 fn6944 fn9471 fn10569 fn8023 fn6956 fn6935 fn8147 fn6939 fn6936 fn6629 fn7928 fn6947 fn8612 fn6957 fn8786 fn6246 fn9367 fn6945 fn6946 fn10024 fn10022 fn6811 fn9361 fn6279 fn6278 fn8569 fn7641 fn8568 fn6943"
+}, {
+  "data": {
+    "id": "611408",
+    "idInt": 611408,
+    "name": "FEN1",
+    "score": 0.006769776522008331,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 531.9740635094307,
+    "y": 464.8210898234145
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn10273 fn6944 fn9471 fn6284 fn6956 fn6935 fn8147 fn6939 fn6936 fn6949 fn6629 fn7952 fn6680 fn6957 fn8786 fn6676 fn10713 fn7495 fn7500 fn9361 fn6279 fn6278 fn8569 fn7641 fn8568"
+}, {
+  "data": {
+    "id": "612341",
+    "idInt": 612341,
+    "name": "RAD9A",
+    "score": 0.0028974131563619387,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 455.8128125018193,
+    "y": 555.4591537139819
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn6935 fn6219 fn6680 fn6676 fn10713 fn7552 fn7495"
+}, {
+  "data": {
+    "id": "608473",
+    "idInt": 608473,
+    "name": "RAD9B",
+    "score": 0.0026928704785200708,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 363.1144068403203,
+    "y": 515.7352912086707
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn6935"
+}, {
+  "data": {
+    "id": "611560",
+    "idInt": 611560,
+    "name": "APEX2",
+    "score": 0.0026215687185565106,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 689.1927803956215,
+    "y": 634.0100611862405
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": ""
+}, {
+  "data": {
+    "id": "600585",
+    "idInt": 600585,
+    "name": "POLD3",
+    "score": 0.0024938385347587078,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 118.3562364528364,
+    "y": 384.3877516879044
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn10273 fn6944 fn9471 fn10569 fn8823 fn9180 fn6956 fn6935 fn8147 fn6939 fn6936 fn6648 fn6947 fn6957 fn8786 fn6246 fn9367 fn9368 fn6945 fn6946 fn7921 fn6811 fn8380 fn6279 fn6278 fn8569 fn7641 fn8568 fn6943"
+}, {
+  "data": {
+    "id": "599889",
+    "idInt": 599889,
+    "name": "RAD51",
+    "score": 0.002453016748286352,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 759.7017646483837,
+    "y": 338.3207127700095
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn6931 fn9632 fn7950 fn9188 fn6956 fn6935 fn7338 fn6936 fn6949 fn6629 fn6957 fn6246 fn7453 fn7451 fn10024 fn7456 fn7454 fn7469 fn7467 fn10022 fn7552 fn7495 fn7463 fn7464 fn9361"
+}, {
+  "data": {
+    "id": "602299",
+    "idInt": 602299,
+    "name": "LIG1",
+    "score": 0.0023873089881679688,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 264.10227893804523,
+    "y": 631.7198779917306
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn10273 fn6944 fn9471 fn6956 fn6935 fn8147 fn6939 fn6936 fn6949 fn6957 fn8786 fn6945 fn6946 fn6279 fn6278 fn8569 fn7641 fn8568 fn6943"
+}, {
+  "data": {
+    "id": "603070",
+    "idInt": 603070,
+    "name": "RFC5",
+    "score": 0.0022841757103715943,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 282.21587939790476,
+    "y": 109.57476207336902
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn10273 fn9471 fn6956 fn6935 fn8147 fn6939 fn6936 fn6957 fn8786 fn6945 fn6946 fn6811 fn6279 fn6278 fn8569 fn7641 fn8568 fn6943"
+}, {
+  "data": {
+    "id": "610236",
+    "idInt": 610236,
+    "name": "RFC4",
+    "score": 0.002235382441847178,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 205.41323994659498,
+    "y": 122.2715768040765
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn10273 fn9471 fn6956 fn6935 fn8147 fn6939 fn6936 fn6957 fn8786 fn6945 fn6946 fn6811 fn6279 fn6278 fn8569 fn7641 fn8568 fn6943"
+}, {
+  "data": {
+    "id": "605365",
+    "idInt": 605365,
+    "name": "GADD45G",
+    "score": 0.0021779529408011977,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 335.2681018951896,
+    "y": 398.62289259289554
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": ""
+}, {
+  "data": {
+    "id": "599863",
+    "idInt": 599863,
+    "name": "RFC2",
+    "score": 0.001982524582665901,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 422.6986944382589,
+    "y": 59.422072599905285
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn10273 fn9471 fn6956 fn6935 fn8147 fn6939 fn6936 fn6957 fn8786 fn6945 fn6946 fn6811 fn6279 fn6278 fn8569 fn7641 fn8568 fn6943"
+}, {
+  "data": {
+    "id": "603700",
+    "idInt": 603700,
+    "name": "MSH6",
+    "score": 0.001946986634883574,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 524.5786092800173,
+    "y": 313.6721385565813
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn6931 fn9632 fn7950 fn9188 fn6956 fn7338 fn6629 fn6947 fn8612 fn6246 fn7453 fn7451 fn7456 fn7454 fn7469 fn7467 fn10022 fn7495 fn7500 fn7463 fn7464 fn9361"
+}, {
+  "data": {
+    "id": "605846",
+    "idInt": 605846,
+    "name": "RFC3",
+    "score": 0.0018726190118726893,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 192.72587571240607,
+    "y": 30.601237157877808
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn10273 fn6931 fn9632 fn7950 fn9188 fn9471 fn10569 fn6956 fn6935 fn8147 fn6939 fn7338 fn6936 fn6957 fn8786 fn7453 fn7451 fn6945 fn6946 fn7456 fn7454 fn7469 fn7467 fn6811 fn7463 fn7464 fn6279 fn6278 fn8569 fn7641 fn8568 fn6943"
+}, {
+  "data": {
+    "id": "600535",
+    "idInt": 600535,
+    "name": "UNG",
+    "score": 0.0018134484466597045,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 497.37919617137817,
+    "y": 693.0523864227225
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": "fn8023 fn7928"
+}, {
+  "data": {
+    "id": "599724",
+    "idInt": 599724,
+    "name": "RFC1",
+    "score": 0.001740600741472309,
+    "query": false,
+    "gene": true
+  },
+  "position": {
+    "x": 381.8836285591501,
+    "y": 194.7788667091606
+  },
+  "group": "nodes",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
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+    "rIntnId": 590,
+    "id": "e588"
+  },
+  "position": {},
+  "group": "edges",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": ""
+}, {
+  "data": {
+    "source": "599724",
+    "target": "603070",
+    "weight": 0.012506178,
+    "group": "spd",
+    "networkId": 1230,
+    "networkGroupId": 24,
+    "intn": true,
+    "rIntnId": 591,
+    "id": "e589"
+  },
+  "position": {},
+  "group": "edges",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": ""
+}, {
+  "data": {
+    "source": "599724",
+    "target": "610236",
+    "weight": 0.016794344,
+    "group": "spd",
+    "networkId": 1230,
+    "networkGroupId": 24,
+    "intn": true,
+    "rIntnId": 592,
+    "id": "e590"
+  },
+  "position": {},
+  "group": "edges",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": ""
+}, {
+  "data": {
+    "source": "599724",
+    "target": "599863",
+    "weight": 0.015911028,
+    "group": "spd",
+    "networkId": 1230,
+    "networkGroupId": 24,
+    "intn": true,
+    "rIntnId": 593,
+    "id": "e591"
+  },
+  "position": {},
+  "group": "edges",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": ""
+}, {
+  "data": {
+    "source": "599724",
+    "target": "605846",
+    "weight": 0.019493334,
+    "group": "spd",
+    "networkId": 1230,
+    "networkGroupId": 24,
+    "intn": true,
+    "rIntnId": 594,
+    "id": "e592"
+  },
+  "position": {},
+  "group": "edges",
+  "removed": false,
+  "selected": false,
+  "selectable": true,
+  "locked": false,
+  "grabbed": false,
+  "grabbable": true,
+  "classes": ""
+}]
diff --git a/documentation/demos/fcose-gene/index.html b/documentation/demos/fcose-gene/index.html
new file mode 100644
index 0000000000..382da47ce7
--- /dev/null
+++ b/documentation/demos/fcose-gene/index.html
@@ -0,0 +1,56 @@
+<!DOCTYPE html>
+<!-- This code is for demonstration purposes only.  You should not hotlink to Github, Rawgit, or files from the Cytoscape.js documentation in your production apps. -->
+<html>
+  <head>
+    <meta charset=utf-8 />
+    <meta name="viewport" content="user-scalable=no, initial-scale=1.0, minimum-scale=1.0, maximum-scale=1.0, minimal-ui">
+
+    <title>FCOSE/Cytoscape.js</title>
+    <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.3.0/css/font-awesome.min.css">
+    <link href="style.css" rel="stylesheet" />
+
+    <!-- polyfills so the demo works on old browsers, like IE -->
+		<script src="https://cdnjs.cloudflare.com/ajax/libs/classlist/1.2.20171210/classList.min.js"></script>
+    <script src="https://unpkg.com/bluebird@3.5.2/js/browser/bluebird.js"></script>
+    <script src="https://unpkg.com/whatwg-fetch@3.0.0/dist/fetch.umd.js"></script>
+
+    <!-- libs used by demo -->
+    <script src="https://cdnjs.cloudflare.com/ajax/libs/lodash.js/3.10.0/lodash.min.js"></script>
+    <script src="https://unpkg.com/popper.js@1.14.4/dist/umd/popper.js"></script>
+    <script src="https://unpkg.com/tippy.js@2.6.0/dist/tippy.all.js"></script>
+
+    <!-- cy libs -->
+    <!-- <script src="../../js/cytoscape.min.js"></script> -->
+    <script src="https://unpkg.com/cytoscape@3.30.4/dist/cytoscape.min.js"></script>
+    <script src="https://unpkg.com/layout-base@2.0.1/layout-base.js"></script>
+    <script src="https://unpkg.com/cose-base@2.2.0/cose-base.js"></script>
+    <script src="https://unpkg.com/cytoscape-fcose@2.2.0/cytoscape-fcose.js"></script>
+    <script src="https://unpkg.com/cytoscape-popper@1.0.2/cytoscape-popper.js"></script>
+
+    <!-- demo src-->
+    <script src="code.js"></script>
+  </head>
+  <body>
+    <div id="cy"></div>
+
+    <span class="fa fa-bars config-toggle" id="config-toggle"></span>
+
+    <div id="config" class="config">
+
+      <div class="preamble">
+        <span class="label label-info">FCOSE/Cytoscape.js demo</span>
+
+        <p>This is a demo of a graph of gene-gene interactions that uses FCOSE for layout and Cytoscape.js for its graph model and visualisation.  Use the controls below to alter the FCOSE layout parameters.</p>
+        <p>
+          Data by <a href="http://genemania.org">GeneMANIA</a><br/>
+          Visualisation by <a href="http://js.cytoscape.org">Cytoscape.js</a><br/>
+          Layout by <a href="https://github.com/iVis-at-Bilkent/cytoscape.js-fcose">FCOSE</a>
+        </p>
+        <p>
+          Note that FCOSE supports both non-compound and compound graphs.  For a compound graph, see <a href="https://ivis-at-bilkent.github.io/cytoscape.js-fcose/demo/demo-compound.html">another FCOSE demo</a>.
+        </p>
+      </div>
+
+    </div>
+  </body>
+</html>
diff --git a/documentation/demos/fcose-gene/style.css b/documentation/demos/fcose-gene/style.css
new file mode 100644
index 0000000000..888bd3ef60
--- /dev/null
+++ b/documentation/demos/fcose-gene/style.css
@@ -0,0 +1,101 @@
+
+html {
+  width: 100%;
+  height: 100%;
+}
+
+body {
+  font: 14px helvetica neue, helvetica, arial, sans-serif;
+  width: 100%;
+  height: 100%;
+  overflow: hidden;
+}
+
+#cy {
+  position: absolute;
+  left: 0;
+  top: 0;
+  bottom: 0;
+  right: 17em;
+}
+
+.config {
+  position: absolute;
+  right: 0;
+  top: 0;
+  bottom: 0;
+  width: 17em;
+  background: rgba(0, 0, 0, 0.666);
+  box-sizing: border-box;
+  padding: 1em;
+  color: #fff;
+  transition-property: opacity;
+  transition-duration: 250ms;
+  transition-timing-function: ease-out;
+  overflow: auto;
+  z-index: 1;
+}
+
+.param {
+  margin-bottom: 1em;
+}
+
+.preamble {
+  margin-bottom: 2em;
+}
+
+p {
+  margin: 0.5em 0;
+  font-size: 0.8em;
+}
+
+.param button {
+  width: 3em;
+  margin-right: 0.25em;
+  text-align: center;
+}
+
+a,
+a:hover {
+  color: #8BB0D0;
+}
+
+.label {
+  display: block;
+}
+
+.slider {
+  display: block;
+  width: 100%;
+  margin: 0;
+}
+
+.config-toggle {
+  position: absolute;
+  right: 0;
+  top: 0;
+  padding: 1em;
+  margin: 0.2em;
+  cursor: pointer;
+  color: #fff;
+  z-index: 9999999;
+}
+
+.config-closed .config {
+  opacity: 0;
+  pointer-events: none;
+}
+
+.config-closed #cy {
+  right: 0;
+}
+
+.tip-link {
+  display: block;
+}
+
+@media (max-width: 600px){
+  #cy {
+    right: 0;
+  }
+}
diff --git a/documentation/docmaker.json b/documentation/docmaker.json
index 0c1b81a79f..ba2c1f4754 100644
--- a/documentation/docmaker.json
+++ b/documentation/docmaker.json
@@ -33,7 +33,7 @@
       "name": "Demos",
       "md": "demos",
       "demos": [
-        { "name": "Cola.js gene-gene graph", "id": "colajs-graph" },
+        { "name": "FCOSE gene-gene graph", "id": "fcose-gene" },
         { "name": "Tokyo railways", "id": "tokyo-railways" },
         { "name": "Wine & cheese", "id": "wine-cheese-map", "github": "cytoscape/wineandcheesemap", "viewUrl": "http://wineandcheesemap.com" },
         { "name": "SBGN stylesheet", "id": "sbgn-stylesheet", "github": "PathwayCommons/cytoscape-sbgn-stylesheet" },
diff --git a/documentation/img/demos/fcose-gene.png b/documentation/img/demos/fcose-gene.png
new file mode 100644
index 0000000000..9db889a245
Binary files /dev/null and b/documentation/img/demos/fcose-gene.png differ
diff --git a/documentation/md/extensions.md b/documentation/md/extensions.md
index da872880d2..193f08e69e 100644
--- a/documentation/md/extensions.md
+++ b/documentation/md/extensions.md
@@ -133,17 +133,17 @@ cytoscape('collection', 'fooBar', function(){
 1. Use [rollup-starter-lib](https://github.com/rollup/rollup-starter-lib) to create the project's scaffolding.  Alternatively, manually generate the project configuration files with your favourite bundler.
 1. Use [Babel](https://babeljs.io) if you want to support older browsers with your extension.  The `rollup-starter-lib` repo has an example in the [`babel` branch](https://github.com/rollup/rollup-starter-lib/tree/babel).
 1. The default export of your extension should be a registration function, e.g.:
-  ```
-  export default function register(cytoscape){
-    cytoscape('collection', 'fooBar', fooBarFunction);
-  }
-  ```
+    ```
+    export default function register(cytoscape){
+      cytoscape('collection', 'fooBar', fooBarFunction);
+    }
+    ```
 1. You may want to support automatic registration for consumers who use traditional `<script>` tags to use your extension, i.e.:
-  ```
-  if(typeof window.cytoscape !== 'undefined'){
-    register(window.cytoscape);
-  }
-  ```
+    ```
+    if(typeof window.cytoscape !== 'undefined'){
+      register(window.cytoscape);
+    }
+    ```
 1. Document your extension's API in a `README.md` file in the root directory of your respository.
 1. [Publish your extension to npm](https://docs.npmjs.com/cli/publish).
 1. [Submit a request](https://github.com/cytoscape/cytoscape.js/issues/new?labels=documentation&title=List%20extension%20:%20%3Cyour%20extension%20name%3E&body=Please%20enter%20your%20Github%20URL%20and%20a%20one-line%20description) to have your extension listed in the documentation.
diff --git a/documentation/md/intro.md b/documentation/md/intro.md
index aa2b902f2f..ad3b309f78 100644
--- a/documentation/md/intro.md
+++ b/documentation/md/intro.md
@@ -23,6 +23,7 @@
     * npm
     * yarn
     * bower
+    * jspm
 * Supports the [R language](https://www.r-project.org/) via [RCyjs](http://www.bioconductor.org/packages/release/bioc/html/RCyjs.html)
 * Supports rendering images of graphs on Node.js with [Cytosnap](https://github.com/cytoscape/cytosnap)
 * Has a large suite of tests that can be run in the browser or the terminal
@@ -50,7 +51,7 @@
 
 * [Amazon](http://amazon.com)
 * [Apache Software Foundation](https://apache.org)
-* [Duo](https://duo.com)
+* [Cisco](https://www.cisco.com)
 * [Elastic](https://www.elastic.co/)
 * [Fujitsu](https://www.fujitsu.com)
 * [GitHub](https://github.com)
@@ -285,6 +286,7 @@ The library was created at the [Donnelly Centre](http://thedonnellycentre.utoron
 ## Packages
 
 * npm : `npm install cytoscape`
+* yarn : `yarn install cytoscape`
 * bower : `bower install cytoscape`
 * jspm : `jspm install npm:cytoscape`