diff --git a/workflows/d3b-diskin-pathogenicity-preprocess-wf.cwl b/workflows/d3b-diskin-pathogenicity-preprocess-wf.cwl index bd26e18..79daf15 100644 --- a/workflows/d3b-diskin-pathogenicity-preprocess-wf.cwl +++ b/workflows/d3b-diskin-pathogenicity-preprocess-wf.cwl @@ -97,7 +97,7 @@ inputs: output_basename: {type: string, doc: "String that will be used in the output filenames.\ \ Be sure to be consistent with this as InterVar will use this too"} annovar_db: {type: File, doc: "Annovar Database with at minimum required resources\ - \ to InterVar", sbg:suggestedValue: {class: File, path: 648b2bf575423d2473af6ed8, + \ to InterVar", "sbg:suggestedValue": {class: File, path: 648b2bf575423d2473af6ed8, name: annovar_humandb_hg38_intervar.tgz}} annovar_db_str: {type: 'string?', doc: "Name of dir created when annovar db is un-tarred", default: "annovar_humandb_hg38_intervar"} @@ -117,12 +117,12 @@ inputs: bcftools_strip_info: {type: 'string?', doc: "csv string of columns to strip if needed\ \ to avoid conflict/improve performance of a tool, i.e INFO/CSQ", default: "^INFO/DP"} intervar_db: {type: File, doc: "InterVar Database from git repo + mim_genes.txt", - sbg:suggestedValue: {class: File, path: 648b2bf575423d2473af6ed6, name: intervardb_2021-08.tar.gz}} + "sbg:suggestedValue": {class: File, path: 648b2bf575423d2473af6ed6, name: intervardb_2021-08.tar.gz}} intervar_db_str: {type: 'string?', doc: "Name of dir created when intervar db is\ \ un-tarred", default: "intervardb"} intervar_ram: {type: 'int?', doc: "Min ram needed for task in GB", default: 32} autopvs1_db: {type: File, doc: "git repo files plus a user-provided fasta reference", - sbg:suggestedValue: {class: File, path: 648b2bf575423d2473af6ed7, name: autoPVS1_references_sym_updated.tar.gz}} + "sbg:suggestedValue": {class: File, path: 648b2bf575423d2473af6ed7, name: autoPVS1_references_sym_updated.tar.gz}} autopvs1_db_str: {type: 'string?', doc: "Name of dir created when annovar db is\ \ un-tarred", default: "data"} outputs: @@ -166,7 +166,7 @@ hints: - class: sbg:maxNumberOfParallelInstances value: 2 "sbg:links": -- id: 'https://github.com/d3b-center/D3b-Pathogenicity-Preprocessing/releases/tag/v1.0.1' +- id: 'https://github.com/d3b-center/D3b-Pathogenicity-Preprocessing/releases/tag/v1.0.2' label: github-release sbg:license: Apache License 2.0 sbg:publisher: KFDRC