From c4404c5fe94b4571c40a9fdbd57727a914cf3651 Mon Sep 17 00:00:00 2001 From: Jo Lynne Rokita Date: Mon, 30 Sep 2024 13:33:13 -0400 Subject: [PATCH] update oncogene/TSG source --- README.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 23ed37f..31314dc 100644 --- a/README.md +++ b/README.md @@ -38,7 +38,8 @@ The fusion reference is a compilation of the annotations listed in the table bel | pfamID | http://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/pfamDesc.txt.gz | UCSC pfamID Description database | | Domain Location | http://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/ucscGenePfam.txt.gz | UCSC pfamID Description database | | TCGA fusions | https://tumorfusions.org/PanCanFusV2/downloads/pancanfus.txt.gz | TumorFusions: an integrative resource for cancer-associated transcript fusions PMID: 29099951 | -| Oncogenes | http://www.bushmanlab.org/assets/doc/allOnco_Feb2017.tsv | www.bushmanlab.org | +| Oncogenes | OncoKB - last updated 20240704 | https://www.oncokb.org/cancer-genes | +| Tumor suppressor genes (TSGs) | OncoKB - last updated 20240704 | https://www.oncokb.org/cancer-genes | | Tumor suppressor genes (TSGs) | https://bioinfo.uth.edu/TSGene/Human_TSGs.txt?csrt=5027697123997809089 | Tumor Suppressor Gene Database 2.0 PMIDs: 23066107, 26590405 | | Kinases | http://kinase.com/human/kinome/tables/Kincat_Hsap.08.02.xls | The protein kinase complement of the human genome PMID: 12471243 | | COSMIC genes | https://cancer.sanger.ac.uk/census | Catalogue of Somatic Mutations in Cancer |