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Bug: annoFuse::annoFuse_single_sample with no filtered fusion calls errors out #86

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kgaonkar6 opened this issue Jan 6, 2021 · 0 comments
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@kgaonkar6
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Provide the command used or report the bug here

What version are you using?

Add error message here (if applicable)

https://cavatica.sbgenomics.com/u/kfdrc-harmonization/sd-bhjxbdqk-ad-hoc-annofuse/tasks/a5fc74b3-da0e-4683-ad2d-4298f1469d8f/stats/
2021-01-06T12:41:57.101146919Z 4: In fusion_filtering_QC(standardFusioncalls = standardFusioncalls, :
2021-01-06T12:41:57.101151409Z No fusion calls with readingframe: in-frameNo fusion calls with readingframe: frameshift
2021-01-06T12:41:57.101155305Z Execution halted

It seems no fusion call has atleast 1 junction read to support the fusion so in fusion_filtering_QC no fusion calls are left as output.

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Run sessionInfo() and post the output below
Was run on cavatica

@kgaonkar6 kgaonkar6 added the bug Something isn't working label Jan 6, 2021
@kgaonkar6 kgaonkar6 added enhancement New feature or request bug Something isn't working and removed bug Something isn't working enhancement New feature or request labels Apr 20, 2021
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