From a28dc6eff93d23f87e874a17ce334fd252eb96b3 Mon Sep 17 00:00:00 2001
From: aadamk <adamkraya@d3b.center>
Date: Wed, 9 Oct 2024 11:08:07 -0400
Subject: [PATCH] Update run_analysis.sh

---
 analyses/post_clustering_associations/run_analysis.sh | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/analyses/post_clustering_associations/run_analysis.sh b/analyses/post_clustering_associations/run_analysis.sh
index d4b43cd..221e030 100644
--- a/analyses/post_clustering_associations/run_analysis.sh
+++ b/analyses/post_clustering_associations/run_analysis.sh
@@ -63,7 +63,7 @@ Rscript --vanilla 04-survival-curves_efs.R \
 --output_dir "${output_dir}/survival_efs"
 
 # sankey plots showing relationship between Multi-modal clusters and other clinical variables
-Rscript --vanilla 05-sankey-plots.R \
---cluster_file $cluster_file \
---histology_file $histology_file \
---plots_dir "${plots_dir}/sankey_plots"
+# Rscript --vanilla 05-sankey-plots.R \
+# --cluster_file $cluster_file \
+# --histology_file $histology_file \
+# --plots_dir "${plots_dir}/sankey_plots"