manifest.json

{
  "name": "captk-preproc-zscore-norm",
  "label": "CaPTk - Preprocessing Z-score Normalization",
  "description": "This package provides z-score for image pre-processing.",
  "author": "CBICA",
  "maintainer": "D3b-TIRU <flywheel@d3b.center>",
  "source": "https://github.com/d3b-center/fw-captk-preproc-zscore-norm", 
  "url": "https://cbica.github.io/CaPTk/preprocessing_zScoreNorm.html",
  "version": "0.0.0-1",
  "license": "Apache-2.0",
  "custom": {
    "gear-builder": {
      "category": "analysis",
      "image": "chop.flywheel.io/captk-preproc-zscore-norm:0.0.0-1"
    },
    "flywheel": {
      "suite": "CaPTk"
    }
  },
  "inputs": {
    "input_image": {
      "base": "file",
      "description": "Input image to process.",
      "optional": false,
      "type": {
        "enum": [
          "nifti"
        ]
      }
    },
    "mask": {
      "base": "file",
      "description": "Input mask to process.",
      "optional": true,
      "type": {
        "enum": [
          "nifti"
        ]
      }
    }
  },
  "config": {
    "zNormQuant": {
      "description": "The Lower-Upper Quantile range to remove.",
      "type": "string",
      "default":"5,95"
    },
    "zNormCut": {
      "description": "The Lower-Upper Cut-off (multiple of stdDev) to remove.",
      "type": "string",
      "default":"3,3"
    }
  },
  "environment":{
    "CAPTK_VERSION":"1.8.1",
    "HOME":"/root",
    "HOSTNAME":"0b633f948575",
    "LD_LIBRARY_PATH":"/opt/captk/1.8.1/usr/",
    "MESA_GL_VERSION_OVERRIDE":"3.2",
    "OLDPWD":"/opt/captk/1.8.1/usr",
    "PATH":"/opt/captk/1.8.1/usr:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
    "PWD":"/opt/captk/1.8.1/usr",
    "QT_GRAPHICSSYSTEM":"native",
    "QT_X11_NO_MITSHM":"1",
    "SHLVL":"1",
    "TERM":"xterm"
  }
}