NAMESPACE

# Generated by roxygen2: do not edit by hand

export(getCNCounts)
export(getIDCounts)
export(getMNVCounts)
export(getSBSCounts)
export(groupsCNPlot)
export(groupsCXPlot)
export(groupsIDPlot)
export(groupsMNVPlot)
export(groupsSBSPlot)
export(patientsCNPlot)
export(patientsCXPlot)
export(patientsIDPlot)
export(patientsMNVPlot)
export(patientsSBSPlot)
export(signaturesAssignment)
export(signaturesCNPlot)
export(signaturesCV)
export(signaturesCXPlot)
export(signaturesDecomposition)
export(signaturesIDPlot)
export(signaturesMNVPlot)
export(signaturesSBSPlot)
export(signaturesSignificance)
import(BSgenome.Hsapiens.1000genomes.hs37d5)
import(GenomeInfoDb)
import(GenomicRanges)
import(IRanges)
import(RhpcBLASctl)
import(ggplot2)
import(glmnet)
import(gridExtra)
import(lsa)
import(nnls)
import(parallel)
importFrom(BSgenome,getSeq)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,complement)
importFrom(Biostrings,reverseComplement)
importFrom(Biostrings,subseq)
importFrom(MutationalPatterns,count_dbs_contexts)
importFrom(MutationalPatterns,count_indel_contexts)
importFrom(MutationalPatterns,get_dbs_context)
importFrom(MutationalPatterns,get_indel_context)
importFrom(MutationalPatterns,get_mut_type)
importFrom(S4Vectors,metadata)
importFrom(data.table,":=")
importFrom(data.table,.N)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(reshape2,melt)