diff --git a/404.html b/404.html index d04545e..c267f3d 100644 --- a/404.html +++ b/404.html @@ -32,7 +32,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/LICENSE-text.html b/LICENSE-text.html index 967a6e5..7833b50 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/articles/index.html b/articles/index.html index cfc09b4..da7423e 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/articles/v1_introduction.html b/articles/v1_introduction.html index 61f8c74..e8cbd3c 100644 --- a/articles/v1_introduction.html +++ b/articles/v1_introduction.html @@ -32,7 +32,7 @@ SparseSignatures - 2.14.1 + 2.16.0 @@ -90,7 +90,7 @@

Robert

Arend Sidow

-

September 20, 2024

+

October 03, 2024

Source: vignettes/v1_introduction.rmd diff --git a/articles/v2_using_the_package.html b/articles/v2_using_the_package.html index a0db239..cf3ead2 100644 --- a/articles/v2_using_the_package.html +++ b/articles/v2_using_the_package.html @@ -32,7 +32,7 @@ SparseSignatures - 2.14.1 + 2.16.0 @@ -90,7 +90,7 @@

Robert

Arend Sidow

-

September 20, 2024

+

October 03, 2024

Source: vignettes/v2_using_the_package.rmd diff --git a/authors.html b/authors.html index 28465f6..065bfce 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 @@ -93,13 +93,13 @@

Citation

Ramazzotti D, Lal A, De Sano L, Sidow A (2024). SparseSignatures: SparseSignatures. -R package version 2.14.1, https://github.com/danro9685/SparseSignatures. +R package version 2.16.0, https://github.com/danro9685/SparseSignatures. 

@Manual{,
   title = {SparseSignatures: SparseSignatures},
   author = {Daniele Ramazzotti and Avantika Lal and Luca {De Sano} and Arend Sidow},
   year = {2024},
-  note = {R package version 2.14.1},
+  note = {R package version 2.16.0},
   url = {https://github.com/danro9685/SparseSignatures},
 }
diff --git a/index.html b/index.html index 580c60b..e630610 100644 --- a/index.html +++ b/index.html @@ -33,7 +33,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/pkgdown.yml b/pkgdown.yml index ef40518..ece2672 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -1,7 +1,7 @@ -pandoc: '3.3' +pandoc: '3.4' pkgdown: 2.1.1.9000 -pkgdown_sha: c0cbde4221b87c7e81273e804f210213129c3d83 +pkgdown_sha: 0cb9d38d1dc25946f01ee7500be9665985d8784e articles: v1_introduction: v1_introduction.html v2_using_the_package: v2_using_the_package.html -last_built: 2024-09-20T12:49Z +last_built: 2024-10-03T06:35Z diff --git a/reference/background.html b/reference/background.html index d279684..29d6a36 100644 --- a/reference/background.html +++ b/reference/background.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/background2.html b/reference/background2.html index dd3fcb6..8ce4ddc 100644 --- a/reference/background2.html +++ b/reference/background2.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/cv_example.html b/reference/cv_example.html index 180386d..56a95ee 100644 --- a/reference/cv_example.html +++ b/reference/cv_example.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/import.trinucleotides.counts.html b/reference/import.trinucleotides.counts.html index 3e6fd15..351d97e 100644 --- a/reference/import.trinucleotides.counts.html +++ b/reference/import.trinucleotides.counts.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/imported_data.html b/reference/imported_data.html index 4377d85..63cdb55 100644 --- a/reference/imported_data.html +++ b/reference/imported_data.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/index.html b/reference/index.html index 3ab6b9f..c29b290 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/lambdaRangeAlphaEvaluation.html b/reference/lambdaRangeAlphaEvaluation.html index 2aa53db..e36d8cc 100644 --- a/reference/lambdaRangeAlphaEvaluation.html +++ b/reference/lambdaRangeAlphaEvaluation.html @@ -18,7 +18,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/lambdaRangeBetaEvaluation.html b/reference/lambdaRangeBetaEvaluation.html index 1a91052..7e36945 100644 --- a/reference/lambdaRangeBetaEvaluation.html +++ b/reference/lambdaRangeBetaEvaluation.html @@ -18,7 +18,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/lambda_range_example.html b/reference/lambda_range_example.html index 9e4f6aa..b0308bd 100644 --- a/reference/lambda_range_example.html +++ b/reference/lambda_range_example.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/mutation_categories.html b/reference/mutation_categories.html index 928393c..6f428f1 100644 --- a/reference/mutation_categories.html +++ b/reference/mutation_categories.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/nmfLasso.html b/reference/nmfLasso.html index 20cfc2b..1390c81 100644 --- a/reference/nmfLasso.html +++ b/reference/nmfLasso.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/nmfLassoBootstrap.html b/reference/nmfLassoBootstrap.html index 2083111..510dd46 100644 --- a/reference/nmfLassoBootstrap.html +++ b/reference/nmfLassoBootstrap.html @@ -19,7 +19,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/nmfLassoCV.html b/reference/nmfLassoCV.html index 9abaac7..ca7235f 100644 --- a/reference/nmfLassoCV.html +++ b/reference/nmfLassoCV.html @@ -19,7 +19,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/nmf_LassoK_example.html b/reference/nmf_LassoK_example.html index 30228db..6b8dd03 100644 --- a/reference/nmf_LassoK_example.html +++ b/reference/nmf_LassoK_example.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/patients.html b/reference/patients.html index 677be60..065d2c7 100644 --- a/reference/patients.html +++ b/reference/patients.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/patients.plot.html b/reference/patients.plot.html index b8f0a4c..08d76b5 100644 --- a/reference/patients.plot.html +++ b/reference/patients.plot.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/sigAssignmentCV.html b/reference/sigAssignmentCV.html index 994ab4a..0e749be 100644 --- a/reference/sigAssignmentCV.html +++ b/reference/sigAssignmentCV.html @@ -19,7 +19,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/sigAssignmentEvaluation.html b/reference/sigAssignmentEvaluation.html index d154cd8..9df8f22 100644 --- a/reference/sigAssignmentEvaluation.html +++ b/reference/sigAssignmentEvaluation.html @@ -18,7 +18,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/sigAssignmentLasso.html b/reference/sigAssignmentLasso.html index 3e6c453..93ab194 100644 --- a/reference/sigAssignmentLasso.html +++ b/reference/sigAssignmentLasso.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/signatures.plot.html b/reference/signatures.plot.html index 3b50b3d..3f7a380 100644 --- a/reference/signatures.plot.html +++ b/reference/signatures.plot.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/ssm560_reduced.html b/reference/ssm560_reduced.html index cf2ddb1..5044367 100644 --- a/reference/ssm560_reduced.html +++ b/reference/ssm560_reduced.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/startingBetaEstimation.html b/reference/startingBetaEstimation.html index 8ed1541..6db74bb 100644 --- a/reference/startingBetaEstimation.html +++ b/reference/startingBetaEstimation.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0 diff --git a/reference/starting_betas_example.html b/reference/starting_betas_example.html index bf31858..d6826f7 100644 --- a/reference/starting_betas_example.html +++ b/reference/starting_betas_example.html @@ -17,7 +17,7 @@ SparseSignatures - 2.14.1 + 2.16.0