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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<!--
Copyright 2019-2024 DATA @ UHN. See the NOTICE file
distributed with this work for additional information
regarding copyright ownership.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>io.uhndata.cards</groupId>
<artifactId>cards-parent</artifactId>
<version>2-SNAPSHOT</version>
<packaging>pom</packaging>
<name>CARDS - Parent POM</name>
<description>CARDS is a software tool providing an easy-to-use Web interface and standardized database back-end for collecting medical data.</description>
<url>https://cards.uhndata.io/</url>
<inceptionYear>2019</inceptionYear>
<licenses>
<license>
<name>Apache License, Version 2.0</name>
<url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
<distribution>repo</distribution>
</license>
</licenses>
<scm>
<connection>scm:git:git://github.com/data-team-uhn/cards-parent.git</connection>
<developerConnection>scm:git:[email protected]:data-team-uhn/cards-parent.git</developerConnection>
<url>https://github.com/data-team-uhn/cards-parent/tree/master/</url>
<tag>HEAD</tag>
</scm>
<organization>
<name>DATA Team at UHN</name>
<url>https://uhndata.io/</url>
</organization>
<distributionManagement>
<site>
<id>nexus.phenotips.org</id>
<url>dav:https://nexus.phenotips.org/nexus/content/sites/site/${project.groupId}/${project.artifactId}/${project.version}</url>
</site>
<repository>
<id>nexus.phenotips.org</id>
<name>Maven2 Remote Repository for Releases</name>
<url>https://nexus.phenotips.org/nexus/content/repositories/releases</url>
</repository>
<snapshotRepository>
<id>nexus.phenotips.org</id>
<name>Maven2 Development Repository for Snapshots</name>
<url>https://nexus.phenotips.org/nexus/content/repositories/snapshots</url>
</snapshotRepository>
</distributionManagement>
<repositories>
<repository>
<id>phenotips-releases</id>
<name>PhenoTips Releases repository</name>
<url>https://nexus.phenotips.org/nexus/content/repositories/releases/</url>
<releases>
<enabled>true</enabled>
<checksumPolicy>fail</checksumPolicy>
</releases>
<snapshots>
<enabled>false</enabled>
<checksumPolicy>fail</checksumPolicy>
</snapshots>
</repository>
<repository>
<id>phenotips-snapshots</id>
<name>PhenoTips Snapshots repository</name>
<url>https://nexus.phenotips.org/nexus/content/repositories/snapshots/</url>
<releases>
<enabled>false</enabled>
<checksumPolicy>fail</checksumPolicy>
</releases>
<snapshots>
<enabled>true</enabled>
<checksumPolicy>fail</checksumPolicy>
</snapshots>
</repository>
<repository>
<id>phenotips-externals</id>
<name>PhenoTips external repositories mirror</name>
<url>https://nexus.phenotips.org/nexus/content/groups/public/</url>
<releases>
<enabled>true</enabled>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
<repository>
<id>apache-snapshots</id>
<name>Apache snapshots</name>
<url>https://repository.apache.org/content/groups/snapshots/</url>
<releases>
<enabled>false</enabled>
</releases>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
</repositories>
<pluginRepositories>
<pluginRepository>
<id>phenotips-externals</id>
<name>PhenoTips external repositories mirror</name>
<url>https://nexus.phenotips.org/nexus/content/groups/public/</url>
<releases>
<enabled>true</enabled>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
</pluginRepository>
<pluginRepository>
<id>phenotips-external-snapshots</id>
<name>PhenoTips external snapshot repositories mirror</name>
<url>https://nexus.phenotips.org/nexus/content/groups/public-snapshots/</url>
<releases>
<enabled>false</enabled>
</releases>
<snapshots>
<enabled>true</enabled>
</snapshots>
</pluginRepository>
</pluginRepositories>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<app.name>Clinical ARchive for Data Science</app.name>
<platform.name>CARDS</platform.name>
<!-- Versions for commonly used dependencies -->
<asm.version>9.3</asm.version>
<composum.nodes.version>4.1.1</composum.nodes.version>
<jackson.version>2.13.5</jackson.version>
<groovy.version>3.0.10</groovy.version>
<slf4j.version>1.7.36</slf4j.version>
<jackrabbit.version>2.21.20</jackrabbit.version>
<oak.version>1.44.0</oak.version>
<!-- These influence optional parts the build process -->
<enforcer.skip>false</enforcer.skip>
<checkstyle.skip>false</checkstyle.skip>
<dependencyCheck.skip>false</dependencyCheck.skip>
<coverage.instructionRatio>1.00</coverage.instructionRatio>
<webpackArguments>--mode=development</webpackArguments>
</properties>
<dependencyManagement>
<dependencies>
<!-- Common dependencies -->
<dependency>
<groupId>javax.json</groupId>
<artifactId>javax.json-api</artifactId>
<version>1.1.4</version>
</dependency>
<!-- Apache Commons -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.12.0</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.11.0</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-text</artifactId>
<version>1.10.0</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.4</version>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.2.2</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-csv</artifactId>
<version>1.9.0</version>
</dependency>
<!-- Everybody logs -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>log4j-over-slf4j</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.2.11</version>
</dependency>
<!-- OSGI -->
<dependency>
<groupId>org.osgi</groupId>
<artifactId>osgi.core</artifactId>
<version>8.0.0</version>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.service.component</artifactId>
<version>1.4.0</version>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.service.component.annotations</artifactId>
<version>1.4.0</version>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.service.event</artifactId>
<version>1.4.1</version>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.service.metatype.annotations</artifactId>
<version>1.4.1</version>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.annotation.versioning</artifactId>
<version>1.1.2</version>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>osgi.cmpn</artifactId>
<version>6.0.0</version>
<scope>provided</scope>
</dependency>
<!-- Platform dependencies -->
<!-- Servlet engine -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.1.0</version>
<scope>provided</scope>
</dependency>
<!-- JCR -->
<dependency>
<groupId>javax.jcr</groupId>
<artifactId>jcr</artifactId>
<version>2.0</version>
</dependency>
<dependency>
<groupId>org.apache.jackrabbit</groupId>
<artifactId>jackrabbit-jcr-commons</artifactId>
<version>${jackrabbit.version}</version>
</dependency>
<dependency>
<groupId>org.apache.jackrabbit</groupId>
<artifactId>jackrabbit-spi-commons</artifactId>
<version>${jackrabbit.version}</version>
</dependency>
<!-- Oak -->
<dependency>
<groupId>org.apache.jackrabbit</groupId>
<artifactId>oak-jackrabbit-api</artifactId>
<version>${oak.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.jackrabbit</groupId>
<artifactId>oak-api</artifactId>
<version>${oak.version}</version>
</dependency>
<dependency>
<groupId>org.apache.jackrabbit</groupId>
<artifactId>oak-core</artifactId>
<version>${oak.version}</version>
</dependency>
<dependency>
<groupId>org.apache.jackrabbit</groupId>
<artifactId>oak-core-spi</artifactId>
<version>${oak.version}</version>
</dependency>
<dependency>
<groupId>org.apache.jackrabbit</groupId>
<artifactId>oak-store-spi</artifactId>
<version>${oak.version}</version>
</dependency>
<dependency>
<groupId>org.apache.jackrabbit</groupId>
<artifactId>oak-security-spi</artifactId>
<version>${oak.version}</version>
</dependency>
<!-- Sling -->
<dependency>
<groupId>org.apache.sling</groupId>
<artifactId>org.apache.sling.api</artifactId>
<version>2.27.0</version>
</dependency>
<dependency>
<groupId>org.apache.sling</groupId>
<artifactId>org.apache.sling.servlets.annotations</artifactId>
<version>1.2.6</version>
</dependency>
<dependency>
<groupId>org.apache.sling</groupId>
<artifactId>org.apache.sling.servlets.post</artifactId>
<version>2.5.0</version>
</dependency>
<dependency>
<groupId>org.apache.sling</groupId>
<artifactId>org.apache.sling.scripting.sightly.runtime</artifactId>
<version>1.2.6-1.4.0</version>
</dependency>
<dependency>
<groupId>org.apache.sling</groupId>
<artifactId>org.apache.sling.commons.scheduler</artifactId>
<version>2.7.12</version>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.framework</artifactId>
<version>1.9.0</version>
</dependency>
<!-- TEST -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.2</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<version>1.10.19</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>32.0.1-jre</version>
</dependency>
<dependency>
<groupId>com.google.code.findbugs</groupId>
<artifactId>jsr305</artifactId>
<version>3.0.2</version>
</dependency>
<dependency>
<groupId>net.jcip</groupId>
<artifactId>jcip-annotations</artifactId>
<version>1.0</version>
</dependency>
</dependencies>
</dependencyManagement>
<build>
<defaultGoal>install</defaultGoal>
<extensions>
<extension>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-webdav-jackrabbit</artifactId>
<version>3.5.1</version>
</extension>
</extensions>
<plugins>
<!-- Enable the slingfeature packaging type -->
<plugin>
<groupId>org.apache.sling</groupId>
<artifactId>slingfeature-maven-plugin</artifactId>
<extensions>true</extensions>
</plugin>
<!-- Show compiler warnings -->
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<compilerArgument>-Xlint:all</compilerArgument>
<showWarnings>true</showWarnings>
<showDeprecation>true</showDeprecation>
<failOnWarning>true</failOnWarning>
</configuration>
</plugin>
<!-- Run Checkstyle on Java code-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
</plugin>
<!-- Validate HTL files -->
<plugin>
<groupId>org.apache.sling</groupId>
<artifactId>htl-maven-plugin</artifactId>
</plugin>
<!-- Check that declared dependencies match what's actually used -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<executions>
<execution>
<id>check-dependencies</id>
<goals>
<goal>analyze-only</goal>
</goals>
<configuration>
<failOnWarning>true</failOnWarning>
<ignoreNonCompile>true</ignoreNonCompile>
<skip>${dependencyCheck.skip}</skip>
</configuration>
</execution>
</executions>
</plugin>
<!-- Fail the build if the test coverage is below a given value. -->
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.7</version>
<executions>
<execution>
<id>jacoco-prepare</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
<execution>
<id>jacoco-check</id>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
<configuration>
<rules>
<rule>
<limits>
<limit>
<counter>INSTRUCTION</counter>
<minimum>${coverage.instructionRatio}</minimum>
</limit>
</limits>
</rule>
</rules>
</configuration>
</plugin>
<!-- Check that all Maven plugins have versions defined -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-enforcer-plugin</artifactId>
<executions>
<execution>
<id>enforce-plugins</id>
<goals>
<goal>enforce</goal>
</goals>
<configuration>
<rules>
<requirePluginVersions>
<message>Best Practice is to always define plugin versions!</message>
<banLatest>false</banLatest>
<banRelease>false</banRelease>
<banSnapshots>false</banSnapshots>
</requirePluginVersions>
</rules>
</configuration>
</execution>
</executions>
<configuration>
<skip>${enforcer.skip}</skip>
</configuration>
</plugin>
<!-- Check that each source file has the right license header. -->
<plugin>
<groupId>org.apache.rat</groupId>
<artifactId>apache-rat-plugin</artifactId>
<version>0.13</version>
<configuration>
<excludes combine.children="append">
<!-- Used by maven-remote-resources-plugin -->
<exclude>src/main/appended-resources/META-INF/*</exclude>
<!-- Don't check anything in target -->
<exclude>**/target/**</exclude>
<!-- Exclude frontend generated code -->
<exclude>**/frontend/node/**</exclude>
<exclude>**/node_modules/**</exclude>
<exclude>**/frontend/dist/**</exclude>
<exclude>**/webpack.config.js</exclude>
<exclude>**/yarn.lock</exclude>
<!-- Exclude JSON files since comments are not supported -->
<exclude>**/*.json</exclude>
<!-- Exclude CSV files since comments are not supported -->
<exclude>**/*.csv</exclude>
<!-- Exclude .token files since comments are not supported -->
<exclude>**/*.token</exclude>
<!-- Documentation files in markdown format -->
<exclude>**/*.md</exclude>
<!-- File hashes -->
<exclude>**/*.sha256sum</exclude>
<!-- Ignore "hidden" files and folders -->
<exclude>**/.*</exclude>
<exclude>**/.*/**</exclude>
<!-- bnd -->
<exclude>bnd.bnd</exclude>
<!-- Ignore file with data for testing -->
<exclude>**/hpo-test.obo</exclude>
<exclude>**/chebi-test.obo</exclude>
<!-- Ignore generated files that are not checked into git anyways -->
<exclude>compose-cluster/docker-compose.yml</exclude>
<exclude>compose-cluster/initializer/initialize_all.sh</exclude>
<exclude>compose-cluster/mongos/mongo-router.conf</exclude>
<exclude>compose-cluster/shard*/**</exclude>
<exclude>compose-cluster/secrets/**</exclude>
<exclude>compose-cluster/SSL_CONFIG/**</exclude>
<exclude>compose-cluster/SLING/**</exclude>
<exclude>compose-cluster/CARDS_LOGS/**</exclude>
<!-- Ignore data/template files used for generating UI Extensions / ExtensionPoints -->
<exclude>**/Development/ExtensionPointResources/**</exclude>
<!-- Ignore email template files since we do not send a license in notification emails -->
<exclude>**/mailTemplates/**</exclude>
<!-- No license in mailcap file -->
<exclude>mailcap</exclude>
<!-- No license in the project-specific identifiers -->
<exclude>project_code.txt</exclude>
<exclude>project_name.txt</exclude>
</excludes>
</configuration>
<executions>
<execution>
<id>rat-check</id>
<phase>verify</phase>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- Deploy a copy locally, to avoid coflicts with other builds -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<executions>
<execution>
<id>local-deploy</id>
<phase>verify</phase>
<goals>
<goal>deploy</goal>
</goals>
<configuration>
<altDeploymentRepository>localBuild::default::file://.mvnrepo</altDeploymentRepository>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-enforcer-plugin</artifactId>
<!-- Lock down plugin version for build reproducibility -->
<version>3.0.0</version>
</plugin>
<!-- Apply checkstyle rules and fail the build in case of errors. -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<!-- Lock down plugin version for build reproducibility -->
<version>3.2.1</version>
<dependencies>
<dependency>
<groupId>com.puppycrawl.tools</groupId>
<artifactId>checkstyle</artifactId>
<version>10.7.0</version>
</dependency>
</dependencies>
<configuration>
<consoleOutput>true</consoleOutput>
<skip>${checkstyle.skip}</skip>
</configuration>
<executions>
<execution>
<id>source-checkstyle</id>
<goals>
<goal>check</goal>
</goals>
<configuration>
<checkstyleRules>
<module name="Checker">
<!--
======================================================================================
Checks that do not require a TreeWalker (sorted alphabetically)
======================================================================================
-->
<module name="FileLength" />
<module name="FileTabCharacter" />
<!-- We don't use Checkstyle's facility to check license headers since it's too limited for our needs.
Instead we use http://code.google.com/p/maven-license-plugin/
<module name="Header">
<property name="headerFile" value="${checkstyle.header.file}" />
<property name="ignoreLines" value="4,5,6,7" />
</module>
-->
<module name="LineLength">
<!-- @(\w+\.)+\w+::\w+\( stands for JSNI method calls: @my.package.MyClass::myMethod() -->
<property name="ignorePattern" value="(@version|@see|@link|^import|@(\w+\.)+\w+::\w+\()" />
<property name="max" value="120" />
</module>
<module name="NewlineAtEndOfFile">
<property name="fileExtensions" value="java, xml, js, css, vm" />
</module>
<module name="NewlineAtEndOfFile">
<property name="lineSeparator" value="crlf" />
<property name="fileExtensions" value="bat" />
</module>
<module name="NewlineAtEndOfFile">
<property name="lineSeparator" value="lf" />
<property name="fileExtensions" value="sh" />
</module>
<!-- We'd like to use this one but there's no option to exclude our internal packages
<module name="PackageHtml" />
-->
<!-- No @author tags -->
<module name="RegexpSingleline">
<property name="format" value="@author" />
<property name="message" value="No @author tag allowed" />
</module>
<module name="RegexpSingleline">
<property name="format" value="\s+$" />
</module>
<module name="SuppressWarningsFilter" />
<!-- We cannot use this rule as it fails on our license headers, considering them as copy-pastes!
<module name="StrictDuplicateCode" />
-->
<!-- We actually have a lot of incomplete translations so we can't really afford this rule
<module name="Translation" />
-->
<module name="UniqueProperties" />
<!--
======================================================================================
Checks that require a TreeWalker (sorted alphabetically)
======================================================================================
-->
<module name="TreeWalker">
<!-- Note: for some checks we have defined a warning severity instead of the default error
severity. This is because we'd like to make the build fail on error for those checks
but there are errors to fix first -->
<!-- Not used because we want to use abstract classes as SPI declarations, without requiring an ugly Abstract* prefix -->
<!--module name="AbstractClassName"/-->
<module name="AnnotationLocation">
<property name="allowSamelineSingleParameterlessAnnotation" value="false" />
</module>
<!-- Not used because we prefer annotations on separate lines, as enforced by AnnotationLocation -->
<!--module name="AnnotationOnSameLine"/-->
<module name="AnonInnerLength" />
<!--module name="ArrayTrailingComma"/-->
<module name="ArrayTypeStyle" />
<module name="AtclauseOrder">
<property name="tagOrder" value="@param, @return, @throws, @exception, @see, @version, @since, @deprecated" />
</module>
<!-- We allow escapes so that the source code can be checked out on non-UTF systems -->
<!--module name="AvoidEscapedUnicodeCharacters"/-->
<!--module name="AvoidInlineConditionals"/-->
<module name="AvoidNestedBlocks" />
<module name="AvoidStarImport" />
<module name="AvoidStaticImport" />
<module name="BooleanExpressionComplexity" />
<module name="ClassDataAbstractionCoupling" />
<module name="ClassFanOutComplexity">
<property name="excludedPackages" value="java.io, java.math, java.text, java.util, java.util.concurrent, java.util.concurrent.atomic, java.util.function, java.util.stream, javax.annotation, javax.inject, javax.servlet, org.apache.commons.collections4, org.apache.commons.lang3, org.json, org.slf4j, org.xwiki.component.annotation, org.apache.sling.servlets.annotations, org.osgi.service.component.annotations" />
</module>
<!-- We use the opposite, RedundantModifier -->
<!--module name="ClassMemberImpliedModifier"/-->
<module name="ClassTypeParameterName" />
<module name="CommentsIndentation" />
<module name="ConstantName" />
<module name="CovariantEquals" />
<module name="CyclomaticComplexity" />
<module name="DeclarationOrder" />
<module name="DefaultComesLast" />
<!-- The default values for this one allow everything to pass. Unneeded.
<module name="DescendantToken" />
-->
<!--module name="DesignForExtension"/-->
<module name="EmptyBlock">
<property name="option" value="text" />
</module>
<module name="EmptyCatchBlock" />
<module name="EmptyForInitializerPad" />
<module name="EmptyForIteratorPad" />
<!-- TODO: Enable this after fixing violations
<module name="EmptyLineSeparator">
<property name="allowMultipleEmptyLines" value="false" />
<property name="allowMultipleEmptyLinesInsideClassMembers" value="false" />
</module>
-->
<module name="EmptyStatement" />
<module name="EqualsAvoidNull" />
<module name="EqualsHashCode" />
<module name="ExecutableStatementCount" />
<module name="ExplicitInitialization" />
<module name="FallThrough" />
<module name="FinalClass" />
<!--module name="FinalLocalVariable"/-->
<!-- TODO: Enable this after fixing violations
<module name="FinalParameters" />
-->
<module name="GenericWhitespace" />
<module name="HiddenField">
<property name="tokens" value="VARIABLE_DEF,LAMBDA" />
</module>
<module name="HideUtilityClassConstructor" />
<!--module name="IllegalCatch"/-->
<module name="IllegalImport">
<property name="illegalPkgs" value="sun,groovy,org.apache.commons.lang,org.apache.commons.codec.binary,antlr" />
</module>
<module name="IllegalInstantiation">
<property name="classes" value="java.lang.Boolean, java.lang.String" />
</module>
<module name="IllegalThrows" />
<module name="IllegalToken">
<property name="tokens" value="LITERAL_NATIVE,LABELED_STAT" />
</module>
<!--module name="IllegalTokenText"/-->
<module name="IllegalType" />
<!--module name="ImportControl"/-->
<module name="ImportOrder">
<property name="groups" value="org.phenotips,org.xwiki,java,javax,org" />
<property name="ordered" value="true" />
<property name="separated" value="true" />
<!-- Static imports -->
<property name="option" value="bottom" />
</module>
<module name="Indentation" />
<module name="InnerAssignment" />
<module name="InterfaceIsType" />
<module name="InterfaceTypeParameterName">
<property name="format" value="^[A-Z]{1,2}$" />
</module>
<module name="JavadocMethod">
<property name="accessModifiers" value="public" />
</module>
<!-- Too strict at the moment -->
<!--module name="JavadocParagraph"/-->
<module name="JavadocStyle" />
<module name="JavadocTagContinuationIndentation" />
<module name="JavadocType">
<property name="scope" value="public" />
<property name="versionFormat" value="\$Id.*\$" />
</module>
<module name="JavadocVariable">
<property name="scope" value="public" />
</module>
<module name="JavaNCSS" />
<module name="LambdaParameterName" />
<module name="LeftCurly">
<property name="option" value="nl" />
<property name="tokens" value="CLASS_DEF,INTERFACE_DEF,ANNOTATION_DEF,ENUM_DEF,CTOR_DEF,METHOD_DEF,OBJBLOCK" />
</module>
<module name="LocalFinalVariableName" />
<module name="LocalVariableName" />
<!--module name="MagicNumber"/-->
<module name="MemberName" />
<module name="MethodCount" />
<module name="MethodLength" />
<!-- Allow for UI methods generated by idea -->
<module name="MethodName">
<property name="format" value="^[a-z][a-zA-Z0-9]*$|^\$\$\$setupUI\$\$\$$" />
</module>
<module name="MethodParamPad" />
<module name="MethodTypeParameterName" />
<!--module name="MissingCtor"/-->
<module name="MissingDeprecated" />
<module name="MissingOverride" />
<module name="MissingSwitchDefault" />
<module name="ModifiedControlVariable" />
<module name="ModifierOrder" />
<module name="MultipleStringLiterals">
<property name="ignoreStringsRegexp" value="^(&#34;&#34;)|(&#34;[0-9]&#34;)|(&#34; &#34;)|(&#34;\]&#34;)|(&#34;\[&#34;)|(&#34;,&#34;)|(&#34;, &#34;)|(&#34;/&#34;)$" />
<property name="allowedDuplicates" value="4" />
</module>
<module name="MultipleStringLiterals">
<property name="ignoreStringsRegexp" value="^(&#34;&#34;)|(&#34;[0-9]&#34;)|(&#34; &#34;)|(&#34;\]&#34;)|(&#34;\[&#34;)|(&#34;,&#34;)|(&#34;, &#34;)|(&#34;/&#34;)$" />
<property name="severity" value="warning" />
</module>
<module name="MultipleVariableDeclarations" />
<module name="MutableException" />
<module name="NeedBraces" />
<module name="NestedForDepth">
<property name="max" value="2" />
</module>
<module name="NestedIfDepth">
<property name="max" value="2" />
</module>
<module name="NestedTryDepth" />
<!--module name="NoClone"/-->
<module name="NoFinalizer" />
<module name="NoLineWrap" />
<module name="NonEmptyAtclauseDescription" />
<module name="NoWhitespaceAfter">
<property name="tokens" value="BNOT, DEC, DOT, INC, LNOT, UNARY_MINUS, UNARY_PLUS" />
</module>
<module name="NoWhitespaceBefore" />
<module name="NPathComplexity" />
<module name="OneStatementPerLine" />
<module name="OneTopLevelClass" />
<module name="OperatorWrap" />
<module name="OuterTypeFilename" />
<module name="OuterTypeNumber" />
<!-- This can clash with DeclarationOrder, since it forces methods with different modifiers close together. -->
<!--module name="OverloadMethodsDeclarationOrder"/-->
<module name="PackageAnnotation" />
<module name="PackageDeclaration" />
<module name="PackageName" />
<module name="ParameterAssignment" />
<module name="ParameterName" />
<module name="ParameterNumber" />
<module name="ParenPad" />
<module name="RedundantImport" />
<module name="RedundantModifier" />
<!-- No direct printing to System.out or System.err -->
<module name="RegexpSinglelineJava">
<!-- . matches any character, so we need to
escape it and use \. to match dots. -->
<property name="format" value="System\.(out|err)\." />
<property name="ignoreComments" value="true" />
</module>
<!--module name="Regexp"/-->
<!--module name="RegexpHeader"/-->
<module name="RequireThis">
<property name="checkMethods" value="false" />
<property name="validateOnlyOverlapping" value="false" />
</module>
<!--module name="RequiredRegexp"/-->
<!-- Increasing the maximum number of allowed return statements, as otherwise
the code will simply use workarounds to hide the same amount of exit points. -->
<module name="ReturnCount">
<property name="max" value="5" />