diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 0f00ae5..574492b 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -16,6 +16,73 @@ you can open a new issue using a relevant [issue form](https://github.com/dataki As a general rule, we don’t assign issues to anyone. If you find an issue to work on, you are welcome to open a PR with a fix. +### More complex configuration options + +All the configuration files must be located under the [config](dot/config) folder of the DOT. + +### Main config file + +The main config file must be called `dot_config.yml` and located at the top [config](dot/config) folder. Note that +this file will be ignored for version control. You may use the [example dot_config yaml](dot/config/example/dot_config.yml) +as a template. + +Besides the DOT DB connection in the paragraph above, see below for additional config options. + +#### Connection parameters for each of the projects to run + +For each of the projects you would like to run, add a key to the DOT config yaml with the following structure: +``` +_db: + type: connection type e.g. postgres + host: host + user: username + pass: password + port: port number e.g 5432 + dbname: database name + schema: schema name, e.g. public + threads: nubmer of threads for DBT, e.g. 4 +``` + +#### Output schema suffix + +The DOT generates 2 kind of database objects: +- Entities of the models that are being tested, e.g. assessments, follow ups, patients +- Results of the failing tests + +If nothing is done, these objects would be created in the same schema as the original data for the project +(thus polluting the DB). If the key `output_schema_suffix` is added, its value will be added as a suffix; i.e. if the +project data is stored in a certain schema, the output objects will go to `_` +(e.g. to `public_tests` if the project schema is `public` and the suffix is set to `tests` in the lines above). + +Note that this mechanism uses a DBT feature, and that the same applies to the GE tests. + +#### Save passed tests + +The key `save_passed_tests` accepts boolean values. If set to true, tha results of the passing tests will be also stored +to the DOT DB. If not, only the results of failing tests will be stored. + +### Other config file locations +Optional configuration for DBT and Great Expectations can be added, per project, in a structure as follows. + +```bash +|____config +| |____ +| | |____dbt +| | | |____profiles.yml +| | | |____dbt_project.yml +| | |____ge +| | | |____great_expectations.yml +| | | |____config_variables.yml +| | | |____batch_config.json +``` +In general these customizations will not be needed, but only in some scenarios with particular requirements; these +require a deeper knowledge of the DOT and of either DBT and/or Great Expectations. + +There are examples for all the files above under [this folder](dot/config/example/project_name). For each of the +files you want to customize, you may copy and adapt the examples provided following the directory structure above. + +More details in the [config README](dot/config/README.md). + ## Making Code changes ## Setting up a Development Environment diff --git a/README.md b/README.md index 093b08b..0ccad67 100644 --- a/README.md +++ b/README.md @@ -275,17 +275,16 @@ also use the DOT user interface for tests, for more details please see section s The DOT will run tests against user-defined views onto the underlying data. These views are called "entities" and defined in table `dot.configured_entities`: -| Column | Description | -| :----------- | :----------- | -| entity_id | UUID of the entity | -| entity_name | Name of the entity e.g. ancview_danger_sign | +| Column | Description | +| :----------- |:--------------------------------------------------------------------------| +| entity_id | Name of the entity e.g. ancview_danger_sign | | entity_category | Category of the entity e.g. anc => needs to be in `dot.entity_categories` | -| entity_definition | String for the SQL query that defines the entity | +| entity_definition | String for the SQL query that defines the entity | For example, this would be an insert command to create `ancview_danger_sign`: ```postgres-sql -INSERT INTO dot.configured_entities VALUES('b05f1f9c-2176-46b0-8e8f-d6690f696b9b', +INSERT INTO dot.configured_entities (project_id,entity_id,entity_category,entity_definition,date_added,date_modified,last_updated_by) VALUES('Project1', 'ancview_danger_sign', 'anc', '{{ config(materialized=''view'') }} {% set schema = %} @@ -294,8 +293,6 @@ from {{ schema }}.ancview_danger_sign'); ``` -Note: UUID in the above statement will be overwritten with an automatically generated value. - All entities use Jinja macro statements - the parts between `{ ... }` - which the DOT uses to create the entity materialized views in the correct database location. Use the above format for any new entities you create. @@ -368,7 +365,7 @@ generated one.

``` 'INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '0cdc9702-91e0-3499-b6f0-4dec12ad0f08', 'ASSESS-1', 3, '', '', - '', 'dot_model__ancview_pregnancy', 'relationships', 'uuid', '', + '', 'ancview_pregnancy', 'relationships', 'uuid', '', $${"name": "danger_signs_with_no_pregnancy", "to": "ref('dot_model__ancview_danger_sign')", "field": "pregnancy_uuid"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` @@ -376,27 +373,27 @@ generated one.

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '52d7352e-56ee-3084-9c67-e5ab24afc3a3', 'DUPLICATE-1', 3, '', - '', '', '6ba8075f-6f35-4ff1-be3a-4c75d0884bf4', 'unique', 'uuid', 'alternative index?', '', + '', '', 'ancview_pregnancy', 'unique', 'uuid', 'alternative index?', '', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` 3. `not_negative_string_column`

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '8aca2bee-9e95-3f8a-90e9-153714e05367', 'INCONSISTENT-1', 3, - '', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'not_negative_string_column', 'patient_age_in_years', '', + '', '', '', 'ancview_pregnancy', 'not_negative_string_column', 'patient_age_in_years', '', $${"name": "patient_age_in_years"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` 4. `not_null`

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '549c0575-e64c-3605-85a9-70356a23c4d2', 'MISSING-1', 3, '', - '', '', '638ed10b-3a2f-4f18-9ca1-ebf23563fdc0', 'not_null', 'patient_id', '', '', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); + '', '', 'ancview_pregnancy', 'not_null', 'patient_id', '', '', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` 5. `accepted_values`

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '935e6b61-b664-3eab-9d67-97c2c9c2bec0', 'INCONSISTENT-1', 3, - '', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'accepted_values', 'fp_method_being_used', '', + '', '', '', 'ancview_pregnancy', 'accepted_values', 'fp_method_being_used', '', $${"values": ['oral mini-pill (progestogen)', 'male condom', 'female sterilization', 'iud', 'oral combination pill', 'implants', 'injectible']}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` @@ -404,14 +401,14 @@ generated one.

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '7f78de0e-8268-3da6-8845-9a445457cc9a', 'DUPLICATE-1', 3, '', - '', '', '66f5d13a-8f74-4f97-836b-334d97932781', 'possible_duplicate_forms', '', '', + '', '', 'ancview_pregnancy', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "delivery_date", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` 7. `associated_columns_not_null`

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', 'd74fc600-31c3-307d-9501-5b7f6b09aff5', 'MISSING-1', 3, '', - '', '', 'dot_model__iccmview_assessment', 'associated_columns_not_null', 'diarrhea_dx', 'diarrhea diagnosis', + '', '', 'ancview_pregnancy', 'associated_columns_not_null', 'diarrhea_dx', 'diarrhea diagnosis', $${"name": "diarrhea_dx_has_duration", "col_value": True, "associated_columns": ['max_symptom_duration']}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` @@ -419,7 +416,7 @@ generated one.

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '0cdc9702-91e0-3499-b6f0-4dec12ad0f08', 'BIAS-1', 3, - 'Test for miscalibrated thermometer', '', '', 'baf349c9-c919-40ff-a611-61ddc59c2d52', 'expect_similar_means_across_reporters', + 'Test for miscalibrated thermometer', '', '', 'ancview_pregnancy', 'expect_similar_means_across_reporters', 'child_temperature_pre_chw', '', '{"key": "reported_by","quantity": "child_temperature_pre_chw", "form_name": "dot_model__iccmview_assessment","id_column": "reported_by"}', '2022-01-19 20:00:00.000 -0500', '2022-01-19 20:00:00.000 -0500', 'your-name'); @@ -428,7 +425,7 @@ generated one.

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '3081f033-e8f4-4f3b-aea8-36f8c5df05dc', 'INCONSISTENT-1', 3, - 'Wrong treatment/dosage arising from wrong age of children (WT-1)', '', '', 'baf349c9-c919-40ff-a611-61ddc59c2d52', + 'Wrong treatment/dosage arising from wrong age of children (WT-1)', '', '', 'ancview_pregnancy', 'expression_is_true', '', '', $${"name": "t_under_24_months_wrong_dosage", "expression": "malaria_act_dosage is not null", "condition": "(patient_age_in_months<24) and (malaria_give_act is not null)"}$$, '2022-02-14 19:00:00.000 -0500', '2022-02-14 19:00:00.000 -0500', 'your-name'); @@ -437,7 +434,7 @@ generated one.

Custom SQL queries require special case because they must have `primary_table` and `primary_table_id_field` specified within the SQL query as shown below: ``` - INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', 'c4a3da8f-32f4-4e9b-b135-354de203ca90', 'TREAT-1', 6, 'Test for new family planning method (NFP-1)', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'custom_sql', '', '', + INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', 'c4a3da8f-32f4-4e9b-b135-354de203ca90', 'TREAT-1', 6, 'Test for new family planning method (NFP-1)', '', '', 'ancview_pregnancy', 'custom_sql', '', '', format('{%s: %s}', to_json('query'::text), to_json($query$ @@ -527,72 +524,7 @@ custom SQL query. Given this, there is a useful Postgres function which will ret see 'Seeing the raw data for failed tests' above. -## More complex configuration options - -All the configuration files must be located under the [config](dot/config) folder of the DOT. - -### Main config file - -The main config file must be called `dot_config.yml` and located at the top [config](dot/config) folder. Note that -this file will be ignored for version control. You may use the [example dot_config yaml](dot/config/example/dot_config.yml) -as a template. - -Besides the DOT DB connection in the paragraph above, see below for additional config options. - -#### Connection parameters for each of the projects to run - -For each of the projects you would like to run, add a key to the DOT config yaml with the following structure: -``` -_db: - type: connection type e.g. postgres - host: host - user: username - pass: password - port: port number e.g 5432 - dbname: database name - schema: schema name, e.g. public - threads: nubmer of threads for DBT, e.g. 4 -``` - -#### Output schema suffix - -The DOT generates 2 kind of database objects: -- Entities of the models that are being tested, e.g. assessments, follow ups, patients -- Results of the failing tests - -If nothing is done, these objects would be created in the same schema as the original data for the project -(thus polluting the DB). If the key `output_schema_suffix` is added, its value will be added as a suffix; i.e. if the -project data is stored in a certain schema, the output objects will go to `_` -(e.g. to `public_tests` if the project schema is `public` and the suffix is set to `tests` in the lines above). - -Note that this mechanism uses a DBT feature, and that the same applies to the GE tests. - -#### Save passed tests - -The key `save_passed_tests` accepts boolean values. If set to true, tha results of the passing tests will be also stored -to the DOT DB. If not, only the results of failing tests will be stored. - -### Other config file locations -Optional configuration for DBT and Great Expectations can be added, per project, in a structure as follows. - -```bash -|____config -| |____ -| | |____dbt -| | | |____profiles.yml -| | | |____dbt_project.yml -| | |____ge -| | | |____great_expectations.yml -| | | |____config_variables.yml -| | | |____batch_config.json -``` -In general these customizations will not be needed, but only in some scenarios with particular requirements; these -require a deeper knowledge of the DOT and of either DBT and/or Great Expectations. - -There are examples for all the files above under [this folder](dot/config/example/project_name). For each of the -files you want to customize, you may copy and adapt the examples provided following the directory structure above. - -More details in the [config README](dot/config/README.md). +### Please refer to [CONTRIBUTING.md](./CONTRIBUTING.md) for information on more complex configuration options. ## How to visualize the results using Superset @@ -706,7 +638,7 @@ NOTE: You might need to use docker-compose on some hosts. `docker compose -f docker-compose-with-airflow.yml down -v` -### Running the DOT in Airflow +### Running the DOT in Airflow (Demo) A DAG has been included which copies data from the uploaded DB dump into the DOT DB 'data_ScanProject1' schema, and then runs the toolkit against this data. To do this ... @@ -733,6 +665,23 @@ Or to run just DOT stage ... `airflow tasks test run_dot_project run_dot 2022-03-01` + +### Running the DOT in Airflow (Connecting to external databases) + +The following instructions illustrate how to use a local airflow environment, connecting with external databases for the data and DOT. + +**NOTE:** These are for illustrative purposes only. If using Airflow in production it's important that it is set up correctly +and does not expose a http connection to the internet, and also has adequate network security (firewal, strong password, etc) + +1. Edit [./dot/dot_config.yml] and set the correct parameters for your external dot_db +2. Create a section for your data databases and set connection parameters +3. If you have a DAG json file `dot_projects.json` already, deploy it into `./airflow/dags` +4. Run steps 1-11 in [Configuring/Building Airflow Docker environment](#Configuring/Building Airflow Docker environment) +5. Run steps 12 and 13, but use the values for your external databases you configured in `dot_config.yml` + +You will need to configure DOT tests and the DAG json file appropriately for your installation. + + #### Adding more projects If configuring Airflow in production, you will need to adjust `./docker/dot/dot_config.yml` accordingly. You can also diff --git a/db/dot/4-upload_sample_dot_data.sql b/db/dot/4-upload_sample_dot_data.sql index af5db27..97b8f8c 100644 --- a/db/dot/4-upload_sample_dot_data.sql +++ b/db/dot/4-upload_sample_dot_data.sql @@ -65,7 +65,7 @@ $${"table_specific_reported_date": "departure_time", "table_specific_patient_uui "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Matt'); INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', 'c4a3da8f-32f4-4e9b-b135-354de203ca90', 'TREAT-1', -5, 'Number of stops has a reasonible value', '', '', 'all_flight_data', 'custom_sql', '', '', +5, 'Number of stops has a reasonable value', '', '', 'all_flight_data', 'custom_sql', '', '', format('{%s: %s}', to_json('query'::text), to_json($query$ @@ -79,6 +79,11 @@ format('{%s: %s}', )::json, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Lorenzo'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '3081f033-e8f4-4f3b-aea8-36f8c5df05dc', 'INCONSISTENT-1', +8, 'Price is a positive number for direct flights', '', '', 'all_flight_data', 'expression_is_true', +'', '', $${"name": "t_direct_flights_positive_price", "expression": "price is not null and price > 0", +"condition": "stops = 'non-stop'"}$$, '2022-12-10 19:00:00.000 -0500', '2022-12-10 19:00:00.000 -0500', 'Lorenzo'); + COMMIT; diff --git a/docker/appsmith/DOT App V2.json b/docker/appsmith/DOT App V2.json index a0b7fab..4970ea9 100644 --- a/docker/appsmith/DOT App V2.json +++ b/docker/appsmith/DOT App V2.json @@ -1 +1 @@ -{"clientSchemaVersion":1.0,"serverSchemaVersion":6.0,"exportedApplication":{"name":"Data Observation Toolkit","isPublic":true,"pages":[{"id":"Run log","isDefault":true},{"id":"Run results","isDefault":false},{"id":"Failed 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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given projectβœ“
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given projectβœ“
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_idEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_idEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.βœ“
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.βœ“
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given projectβœ“
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given projectβœ“
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_idEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_idEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.βœ“
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.βœ“
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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'' : appsmith.user.name == null","insert_form.formData.entity_category","insert_form.formData.entity_id"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Entities_InsertQuery","deleted":false,"gitSyncId":"62bcfc1bb293c75c97818326_62bcfc1bb293c75c97818343"},{"pluginType":"DB","pluginId":"postgres-plugin","unpublishedAction":{"name":"Projects_Dropdown","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Entities","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"select \n project_id as \"label\",\n project_id as \"value\"\nfrom \n dot.projects\n","selfReferencingDataPaths":[],"pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":true,"dynamicBindingPathList":[],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":[],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"Projects_Dropdown","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Entities","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"select \n project_id as \"label\",\n project_id as \"value\"\nfrom \n 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'' : appsmith.user.name == null }}',\n\t\t NOW(),\n\t\t NOW()) ;\n","selfReferencingDataPaths":[],"pluginSpecifiedTemplates":[{"value":false}]},"executeOnLoad":false,"dynamicBindingPathList":[{"key":"body"}],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["Edit_Add_Test_Form.formData.description","Edit_Add_Test_Form.formData.scenario_id","Edit_Add_Test_Form.formData.impact","Edit_Add_Test_Form.formData.entity_id","Edit_Add_Test_Form.formData.priority","Edit_Add_Test_Form.formData.project_id","Edit_Add_Test_Form.formData.test_type","Edit_Add_Test_Form.formData.column_name","Edit_Add_Test_Form.formData.proposed_remediation","appsmith.user.name == null ? '' : appsmith.user.name == null","Edit_Add_Test_Form.formData.test_activated","Edit_Add_Test_Form.formData.form_test_parameters_string"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"Add_Test","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Tests","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"INSERT INTO dot.\"configured_tests\" (\n\t \"test_id\",\n \"test_activated\" ,\n\t\t\"project_id\",\n\t\t\"scenario_id\" ,\n\t\t\"priority\",\n\t\t\"description\" ,\n\t\t\"impact\",\n\t\t\"proposed_remediation\" ,\n\t\t\"entity_id\",\n\t\t\"test_type\" ,\n\t\t\"column_name\" ,\n\t\t\"test_parameters\",\n\t \"last_updated_by\",\n\t \"date_added\",\n\t \"date_modified\"\n) VALUES(\n\t uuid_generate_v3(uuid_ns_oid(), '123'), \n {{Edit_Add_Test_Form.formData.test_activated}},\n\t\t'{{Edit_Add_Test_Form.formData.project_id}}',\n\t\t'{{Edit_Add_Test_Form.formData.scenario_id}}',\n\t\t {{Edit_Add_Test_Form.formData.priority}},\n\t\t'{{Edit_Add_Test_Form.formData.description}}',\n\t\t'{{Edit_Add_Test_Form.formData.impact}}',\n\t\t'{{Edit_Add_Test_Form.formData.proposed_remediation}}',\n\t\t'{{Edit_Add_Test_Form.formData.entity_id}}',\n\t '{{Edit_Add_Test_Form.formData.test_type}}',\n\t '{{Edit_Add_Test_Form.formData.column_name}}',\n\t\t'{{Edit_Add_Test_Form.formData.form_test_parameters_string}}',\n\t\t'{{appsmith.user.name == null ? '' : appsmith.user.name == null }}',\n\t\t NOW(),\n\t\t NOW()) ;\n","selfReferencingDataPaths":[],"pluginSpecifiedTemplates":[{"value":false}]},"executeOnLoad":false,"dynamicBindingPathList":[{"key":"body"}],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["Edit_Add_Test_Form.formData.description","Edit_Add_Test_Form.formData.scenario_id","Edit_Add_Test_Form.formData.impact","Edit_Add_Test_Form.formData.entity_id","Edit_Add_Test_Form.formData.priority","Edit_Add_Test_Form.formData.project_id","Edit_Add_Test_Form.formData.test_type","Edit_Add_Test_Form.formData.column_name","Edit_Add_Test_Form.formData.proposed_remediation","appsmith.user.name == null ? '' : appsmith.user.name == null","Edit_Add_Test_Form.formData.test_activated","Edit_Add_Test_Form.formData.form_test_parameters_string"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Tests_Add_Test","deleted":false,"gitSyncId":"62c4319bfa65ed18bbd7c88a_62c4e3eb8b0ebe338ec5799e"}],"actionCollectionList":[{"unpublishedCollection":{"name":"JSFunctions","pageId":"Tests","pluginId":"js-plugin","pluginType":"JS","actions":[],"archivedActions":[],"body":"export default {\n\tallowUpdate: () => !!configured_tests.selectedRows.length,\n\tgetIds: () => {\n\t\treturn `(${configured_tests.selectedRows.map(item => `\\'${item.test_id}\\'`).join(\", \")})`\n\t},\n\tbulkUpdate: () => {\n\t\tlet test_activated_b = test_activated_bulk.isChecked;\n\t\tBulk_Update_Test_Activated.run(() => {\n\t\t\tshowAlert('Successfully updated test activation status');\n\t\t\tcloseModal('Activate_Tests_Modal');\n\t\t\tresetWidget('test_activated_bulk');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_activated_bulk': test_activated_b, 'test_ids': this.getIds()});\n\t},\n\tbulkDelete: () => {\n\t\tBulk_Delete_Tests.run(() => {\n\t\t\tshowAlert('Successfully deleted tests');\n\t\t\tcloseModal('Delete_Tests_Modal');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_ids': this.getIds()});\n\t},\n\t// Flag to say if a test_type uses test_parameters in configured_tests\n\ttestUsesParameters: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Parameters.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\t// Flag to say if a test_type uses columns in configured_tests\n\ttestUsesColumn: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Column.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\tparamIsVisible: (test_type_in, param_in) => {\n\t\tconst params = Test_Parameters.data.map(item => { return item.test_type == test_type_in ? item.parameter : undefined;});\n\t\treturn params.includes(param_in);\n\t},\n\tgetEntityColumns: (project_id_in, entity_id_in, data_type_in) => { \n\t\t//project_id_in = 'riders';\n\t\t//entity_id_in = 'riders_all_fuel_log_data';\n\t\t//data_type_in='double precision'\n\t\t// JSON forms don't allow us to access selected label, unlike regular forms, so we need tor strip out artifacts\n\t\t// TODO Refactor test_parameters to lose dbt artifacts like ref('')\n\t\tentity_id_in = entity_id_in == undefined ? undefined : entity_id_in.replace(\"ref('dot_model__\",\"\").replace(\"')\",\"\");\n\t\t// Filter and subset\n\t\tvar columns = Entity_column_names_cache.data.filter(function (el) {\n \t\treturn (el.entity_id == entity_id_in || entity_id_in == undefined) &&\n\t\t\t\t (el.entity_id == entity_id_in || entity_id_in == undefined) &&\n\t\t\t\t (el.project_id == project_id_in || project_id_in == undefined) &&\n\t\t\t\t (el.data_type == data_type_in || data_type_in == undefined);\n\t\t}).map( ({label, value}) => ({label, value} ) );\n\t\treturn columns;\n\t},\n\tgetTestParameterDescription: (test_parameter_in) => { \n\t\t//test_parameter_in = 'values';\n\t\t// Filter \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? ' ' : params[0].description;\n\t\treturn tooltip;\n\t},\n\tgetTestParameterExample: (test_parameter_in) => { \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar example = params.length == 0 ? ' ' : params[0].example;\n\t\treturn example;\n\t},\n\tgetTestTypeDescription: (test_type_in) => { \n\t\t// Filter \n\t\tvar params = Test_Types_Cache.data.filter(function (el) {\n \t\treturn el.test_type == test_type_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? ' ' : params[0].description;\n\t\treturn tooltip;\n\t}\n}","variables":[],"userPermissions":[]},"publishedCollection":{"name":"JSFunctions","pageId":"Tests","pluginId":"js-plugin","pluginType":"JS","actions":[],"archivedActions":[],"body":"export default {\n\tallowUpdate: () => !!configured_tests.selectedRows.length,\n\tgetIds: () => {\n\t\treturn `(${configured_tests.selectedRows.map(item => `\\'${item.test_id}\\'`).join(\", \")})`\n\t},\n\tbulkUpdate: () => {\n\t\tlet test_activated_b = test_activated_bulk.isChecked;\n\t\tBulk_Update_Test_Activated.run(() => {\n\t\t\tshowAlert('Successfully updated test activation status');\n\t\t\tcloseModal('Activate_Tests_Modal');\n\t\t\tresetWidget('test_activated_bulk');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_activated_bulk': test_activated_b, 'test_ids': this.getIds()});\n\t},\n\tbulkDelete: () => {\n\t\tBulk_Delete_Tests.run(() => {\n\t\t\tshowAlert('Successfully deleted tests');\n\t\t\tcloseModal('Delete_Tests_Modal');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_ids': this.getIds()});\n\t},\n\t// Flag to say if a test_type uses test_parameters in configured_tests\n\ttestUsesParameters: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Parameters.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\t// Flag to say if a test_type uses columns in configured_tests\n\ttestUsesColumn: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Column.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\tparamIsVisible: (test_type_in, param_in) => {\n\t\tconst params = Test_Parameters.data.map(item => { return item.test_type == test_type_in ? item.parameter : undefined;});\n\t\treturn params.includes(param_in);\n\t},\n\tgetEntityColumns: (project_id_in, entity_id_in, data_type_in) => { \n\t\t//project_id_in = 'Brac';\n\t\t//entity_id_in = 'ancview_pregnancy';\n\t\t// JSON forms don't allow us to access selected label, unlike regular forms, so we need tor strip out artifacts\n\t\t// TODO Refactor test_parameters to lose dbt artifacts like ref('')\n\t\tentity_id_in = entity_id_in == undefined ? undefined : entity_id_in.replace(\"ref('dot_model__\",\"\").replace(\"')\",\"\");\n\t\t// Filter and subset\n\t\tvar columns = Entity_column_names_cache.data.filter(function (el) {\n \t\treturn (el.entity_id == entity_id_in || entity_id_in == undefined) &&\n\t\t\t\t (el.entity_id == entity_id_in || entity_id_in == undefined) &&\n\t\t\t\t (el.project_id == project_id_in || project_id_in == undefined) &&\n\t\t\t\t (el.data_type == data_type_in || data_type_in == undefined);\n\t\t}).map( ({label, value}) => ({label, value} ) );\n\t\treturn columns;\n\t},\n\tgetTestParameterDescription: (test_parameter_in) => { \n\t\t//test_parameter_in = 'values';\n\t\t// Filter \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? ' ' : params[0].description;\n\t\treturn tooltip;\n\t},\n\tgetTestParameterExample: (test_parameter_in) => { \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar example = params.length == 0 ? ' ' : params[0].example;\n\t\treturn example;\n\t},\n\tgetTestTypeDescription: (test_type_in) => { \n\t\t// Filter \n\t\tvar params = Test_Types_Cache.data.filter(function (el) {\n \t\treturn el.test_type == test_type_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? ' ' : params[0].description;\n\t\treturn tooltip;\n\t}\n}","variables":[],"userPermissions":[]},"id":"Tests_JSFunctions","deleted":false,"gitSyncId":"62bcfc1bb293c75c97818326_62bcfc1cb293c75c9781838d"}],"updatedResources":{"actionList":["JSFunctions.bulkUpdate##ENTITY_SEPARATOR##Tests","EditQuery##ENTITY_SEPARATOR##Entities","SelectQuery##ENTITY_SEPARATOR##Run 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tests","Categories","Projects","Run results","Run log","Tests","Entities"],"actionCollectionList":["JSFunctions##ENTITY_SEPARATOR##Tests"]},"editModeTheme":{"name":"Classic","displayName":"Classic","isSystemTheme":true,"deleted":false},"publishedTheme":{"name":"Classic","displayName":"Classic","isSystemTheme":true,"deleted":false}} \ No newline at end of file diff --git a/docker/run_demo.py b/docker/run_demo.py index 651f925..e967e44 100644 --- a/docker/run_demo.py +++ b/docker/run_demo.py @@ -10,7 +10,7 @@ url_demo_data = "https://drive.google.com/uc?id=157Iad8mHnwbZ_dAeLQy5XfLihhcpD6yc" filename_demo_data = "dot_demo_data.tar.gz" -url_dot_ui = "http://localhost:82/app/data-observation-toolkit/run-log-634491ea0da61b0e9f38760d?embed=True" +url_dot_ui = "http://localhost:82/app/data-observation-toolkit/run-log-634491ea0da61b0e9f38760d?embed=True" # pylint: disable=line-too-long # Check if db, appsmith and tar file are there and if so, delete them. os.chdir("demo/") @@ -30,12 +30,12 @@ # Open/Extract tarfile with tarfile.open(filename_demo_data) as my_tar: - my_tar.extractall('') + my_tar.extractall("") my_tar.close() with open("./db/.env") as f: - demo_pwd=f.read().split("=")[1] - os.environ['POSTGRES_PASSWORD'] = demo_pwd + demo_pwd = f.read().split("=")[1] + os.environ["POSTGRES_PASSWORD"] = demo_pwd # Composing and running container(s) print("Starting DOT...\n") @@ -49,8 +49,10 @@ webbrowser.open(url_dot_ui) -print("In case DOT was not opened in your browser, please go to this URL: " - "http://localhost:82/app/data-observation-toolkit/run-log-634491ea0da61b0e9f38760d?embed=True\n") +print( + "In case DOT was not opened in your browser, please go to this URL: " + "http://localhost:82/app/data-observation-toolkit/run-log-634491ea0da61b0e9f38760d?embed=True\n" +) input("Press return to stop DOT container\n") print("Container is being stopped - we hope you enjoyed this demo :)") docker.compose.stop() diff --git a/dot/requirements_dot.txt b/dot/requirements_dot.txt index e45e5be..90222a2 100644 --- a/dot/requirements_dot.txt +++ b/dot/requirements_dot.txt @@ -1,146 +1,46 @@ -agate==1.6.1 - -appnope==0.1.2 -argon2-cffi==21.1.0 -asn1crypto==1.4.0 -attrs==21.2.0 -azure-common==1.1.27 -azure-core==1.21.0 -azure-storage-blob==12.9.0 -Babel==2.9.1 -backcall==0.2.0 -backports.zoneinfo==0.2.1 black==21.12b0 -bleach==4.1.0 -boto3==1.20.20 -cachetools==4.2.4 -certifi==2022.12.7 -cffi==1.15.0 -chardet==3.0.4 -click==8.0.3 -colorama==0.4.4 -cryptography==3.4.8 -cycler==0.11.0 dbt-core==1.0.0 dbt-extractor==0.4.0 dbt-postgres==1.0.0 -debugpy==1.5.1 decorator==5.1.0 -defusedxml==0.7.1 -entrypoints==0.3 -fonttools==4.28.3 +Faker==15.1.1 +faker_airtravel==0.4 +flatten_json==0.1.13 gdown==4.5.3 great-expectations==0.12.10 -grpcio==1.42.0 -hologram==0.0.14 -idna==2.10 -importlib-metadata==4.8.2 -importlib-resources==5.4.0 -ipykernel==6.6.0 -ipython==7.31.1 +ipython==8.10.0 ipython-genutils==0.2.0 -ipywidgets==7.6.5 -isodate==0.6.0 -jedi==0.18.1 jinja2==2.11.3 -jmespath==0.10.0 json-rpc==1.13.0 -jsonpatch==1.32 -jsonpointer==2.2 -jsonschema==3.1.1 jupyter-client==7.1.0 jupyter-core==4.9.1 jupyterlab-pygments==0.1.2 jupyterlab-widgets==1.0.2 -keyring==21.8.0 -kiwisolver==1.3.2 -leather==0.3.4 -Logbook==1.5.3 MarkupSafe==2.0.1 -mashumaro==2.9 -matplotlib==3.5.0 -matplotlib-inline==0.1.3 minimal-snowplow-tracker==0.0.2 -mistune==0.8.4 -msgpack==1.0.3 -msrest==0.6.21 -mypy-extensions==0.4.3 -nbclient==0.5.9 +mock==4.0.3 nbformat==5.1.3 nest-asyncio==1.5.4 -networkx==2.6.3 notebook==6.4.12 -numpy==1.20.3 -oauthlib==3.2.1 +numpy==1.22.0 +oauthlib==3.2.2 openpyxl==3.0.9 -oscrypto==1.2.1 -packaging==20.9 pandas==1.3.4 -pandocfilters==1.5.0 -parsedatetime==2.6 -parso==0.8.3 -pathspec==0.9.0 -pexpect==4.8.0 -pickleshare==0.7.5 -Pillow==9.3.0 -platformdirs==2.4.0 -prometheus-client==0.12.0 -prompt-toolkit==3.0.23 proto-plus==1.19.8 -protobuf==3.19.5 psycopg2-binary==2.9.2 -ptyprocess==0.7.0 -pyasn1==0.4.8 -pyasn1-modules==0.2.8 -pybase64==1.2.3 -pycparser==2.21 -pycryptodomex==3.12.0 Pygments==2.10.0 -PyJWT==2.4.0 -pyOpenSSL==20.0.1 -pyparsing==2.4.7 -pyrsistent==0.18.0 -python-dateutil==2.8.2 -python-on-whales==0.53.0 +pylint==2.14.1 +pytest==7.2.0 +pytest-timeout==2.1.0 +python_on_whales==0.53.0 python-slugify==5.0.2 -pytimeparse==1.1.8 -pytz==2021.3 -pytz-deprecation-shim==0.1.0.post0 PyYAML==6.0 -pyzmq==22.3.0 requests==2.23.0 requests-oauthlib==1.3.0 rsa==4.8 ruamel.yaml==0.17.17 ruamel.yaml.clib==0.2.6 -s3transfer==0.5.0 -scipy==1.7.3 -seaborn==0.11.2 -Send2Trash==1.8.0 setuptools-scm==6.3.2 -six==1.16.0 SQLAlchemy==1.3.24 -sqlparse==0.4.2 -termcolor==1.1.0 -terminado==0.12.1 -testpath==0.5.0 -text-unidecode==1.3 -tomli==1.2.2 toolz==0.11.2 -tornado==6.1 -traitlets==5.1.1 typing-extensions==3.10.0.2 -tzdata==2021.5 -tzlocal==4.1 -wcwidth==0.2.5 -webencodings==0.5.1 -Werkzeug==2.0.2 -widgetsnbextension==3.5.2 -zipp==3.6.0 -pytest==7.1.2 -mock==4.0.3 -pylint==2.14.1 -pytest-timeout==2.1.0 -faker==15.1.1 -faker-airtravel==0.4 -flatten_json==0.1.13 diff --git a/dot/self_tests/data/expected/integration/test_results.csv b/dot/self_tests/data/expected/integration/test_results.csv index bd91bff..33aa634 100644 --- a/dot/self_tests/data/expected/integration/test_results.csv +++ b/dot/self_tests/data/expected/integration/test_results.csv @@ -1,572 +1,582 @@ ,test_result_id,run_id,test_id,entity_id,status,view_name,id_column_name,id_column_value -0,c3c714cd-9e3a-3883-8331-bbefac95c737,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,9074997b-f1f2-3efa-8354-64ecfbce502f -1,bbad97d3-868d-3354-bbe2-92471ae1175d,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,7ca78d29-3597-33cd-8abc-41ec0fd08e8d -2,90899fae-cab0-3ff8-9377-4eadcc7590b2,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,d5b16037-98fd-38cb-9631-6854148f1c96 -3,ba606c31-ba56-3df5-9764-1f103d4498c7,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,5b60c5de-1408-39d5-8a8b-f7113b475a8f -4,db401fe4-2936-3af3-8ebc-453ec22deb88,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,f413c92f-8efc-33cd-8db8-7944e10294ec -5,1c3a6f62-8da4-3d2f-b0b9-479254b354ca,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,f6123e3c-feee-3161-ab48-ca5143622f2f 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+579,cefe457d-e217-371b-90d4-ed73a318d7a0,51479924-b5ff-4efc-9ba0-97cbd021b39f,942f4496-1202-3768-9cfe-96128bcd754c,all_airports_data,fail,tr_dot_model__all_airports_data_unique_airport,airport,Harbin Yangjiagang airport +580,e3dbbd87-6dc2-30cb-8a05-8832d87dba82,51479924-b5ff-4efc-9ba0-97cbd021b39f,8abccc35-874f-3e54-98eb-6eed5c00cf72,all_flight_data,fail,chv_tr_different_dot_model__all_flight_data_price_distribution,airline,British Airways \ No newline at end of file diff --git a/dot/self_tests/data/expected/integration/test_results_summary.csv b/dot/self_tests/data/expected/integration/test_results_summary.csv index c28ac2f..4090ea4 100644 --- a/dot/self_tests/data/expected/integration/test_results_summary.csv +++ b/dot/self_tests/data/expected/integration/test_results_summary.csv @@ -1,5 +1,5 @@ ,run_id,test_id,entity_id,test_type,column_name,test_parameters,test_status,test_status_message,failed_tests_view,failed_tests_view_sql,rows_total,rows_failed,rows_passed -0,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( +0,51479924-b5ff-4efc-9ba0-97cbd021b39f,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( SELECT dot_model__all_flight_data.stops AS value_field, count(*) AS n_records FROM self_tests_public_tests.dot_model__all_flight_data @@ -9,7 +9,7 @@ all_values.n_records FROM all_values WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 -1,fce38b78-5b90-4662-9c14-d93c88fe5323,a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," +1,51479924-b5ff-4efc-9ba0-97cbd021b39f,a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," select distinct uuid, 'dot_model__all_flight_data' as primary_table, @@ -21,11 +21,35 @@ 'uuid'::text AS primary_table_id_field FROM self_tests_public_tests.dot_model__all_flight_data WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 -2,fce38b78-5b90-4662-9c14-d93c88fe5323,ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list +2,51479924-b5ff-4efc-9ba0-97cbd021b39f,368b65ac-b5e4-37a9-902d-5f385f94a9a0,all_flight_data,expression_is_true,,"{'name': 't_direct_flights_positive_price', 'condition': ""stops = 'non-stop'"", 'expression': 'price is not null and price > 0'}",fail,"got 10 results, configured to fail if != 0",tr_dot_model__all_flight_data_t_direct_flights_p_p," WITH meet_condition AS ( + SELECT dot_model__all_flight_data.uuid, + dot_model__all_flight_data.departure_time, + dot_model__all_flight_data.airline, + dot_model__all_flight_data.origin_airport, + dot_model__all_flight_data.origin_iata, + dot_model__all_flight_data.destination_airport, + dot_model__all_flight_data.destination_iata, + dot_model__all_flight_data.stops, + dot_model__all_flight_data.price + FROM self_tests_public_tests.dot_model__all_flight_data + WHERE dot_model__all_flight_data.stops::text = 'non-stop'::text + ) + SELECT meet_condition.uuid, + meet_condition.departure_time, + meet_condition.airline, + meet_condition.origin_airport, + meet_condition.origin_iata, + meet_condition.destination_airport, + meet_condition.destination_iata, + meet_condition.stops, + meet_condition.price + FROM meet_condition + WHERE NOT (meet_condition.price IS NOT NULL AND meet_condition.price > 0::double precision);",1001,10,991 +3,51479924-b5ff-4efc-9ba0-97cbd021b39f,ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list FROM self_tests_public_tests.dot_model__all_flight_data WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text HAVING count(*) > 0;",1001,1,1000 -3,fce38b78-5b90-4662-9c14-d93c88fe5323,df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, +4,51479924-b5ff-4efc-9ba0-97cbd021b39f,df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, dot_model__all_flight_data.departure_time, dot_model__all_flight_data.airline, dot_model__all_flight_data.origin_airport, @@ -36,7 +60,7 @@ dot_model__all_flight_data.price FROM self_tests_public_tests.dot_model__all_flight_data WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 -4,fce38b78-5b90-4662-9c14-d93c88fe5323,59b7fabd-acb8-3a38-8cbf-91736a214cab,all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( +5,51479924-b5ff-4efc-9ba0-97cbd021b39f,59b7fabd-acb8-3a38-8cbf-91736a214cab,all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, dot_model__all_flight_data.airline AS patient_uuid_to_flag, count(dot_model__all_flight_data.uuid) AS number_of_records @@ -53,7 +77,7 @@ FROM possible_duplicate_combinations pdc LEFT JOIN self_tests_public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text HAVING count(*) > 0;",1001,274,727 -5,fce38b78-5b90-4662-9c14-d93c88fe5323,2ba7f3e8-cd62-37ac-854f-01f704489130,all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list +6,51479924-b5ff-4efc-9ba0-97cbd021b39f,2ba7f3e8-cd62-37ac-854f-01f704489130,all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, dot_model__all_flight_data.origin_airport AS from_column_id FROM self_tests_public_tests.dot_model__all_flight_data) from_model @@ -61,10 +85,10 @@ FROM self_tests_public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL HAVING count(*) > 0;",1001,5,996 -6,fce38b78-5b90-4662-9c14-d93c88fe5323,942f4496-1202-3768-9cfe-96128bcd754c,all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, +7,51479924-b5ff-4efc-9ba0-97cbd021b39f,942f4496-1202-3768-9cfe-96128bcd754c,all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, count(*) AS n_records FROM self_tests_public_tests.dot_model__all_airports_data WHERE dot_model__all_airports_data.airport IS NOT NULL GROUP BY dot_model__all_airports_data.airport HAVING count(*) > 1;",365,2,363 -7,fce38b78-5b90-4662-9c14-d93c88fe5323,8abccc35-874f-3e54-98eb-6eed5c00cf72,all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 +8,51479924-b5ff-4efc-9ba0-97cbd021b39f,8abccc35-874f-3e54-98eb-6eed5c00cf72,all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 \ No newline at end of file diff --git a/dot/utils/configuration_management.py b/dot/utils/configuration_management.py index 0b857c9..5e8b18a 100644 --- a/dot/utils/configuration_management.py +++ b/dot/utils/configuration_management.py @@ -337,10 +337,10 @@ def generate_tests_from_db(project_id, logger=logging.Logger): # test_parameters = "" # Update 'tests' node for this entity with non column-specific tests - if column_name in (None, ""): + if column_name in (None, "","null"): if "tests" not in config_options[entity_id]: config_options[entity_id]["tests"] = [] - if test_parameters not in ("", None): + if test_parameters not in ("", None,"null"): test = {test_type: test_parameters} config_options[entity_id]["tests"].append(test) diff --git a/dot/utils/connection_utils.py b/dot/utils/connection_utils.py index de657c6..e145a6e 100644 --- a/dot/utils/connection_utils.py +++ b/dot/utils/connection_utils.py @@ -35,7 +35,9 @@ def refresh_db_metadata( @return: updated database metadata """ global metadata - metadata = MetaData(engine, reflect=True, schema=schema) + metadata = MetaData(engine, schema=schema) + metadata.reflect() + return metadata def create_sqlalchemy_engine(db_credentials: dict) -> sa.engine.base.Engine: diff --git a/dot/utils/run_management.py b/dot/utils/run_management.py index c9fa2de..273647a 100644 --- a/dot/utils/run_management.py +++ b/dot/utils/run_management.py @@ -109,24 +109,34 @@ def run_dot_stages(project_id, logger, run_id): all_tests_summary = pd.concat([dbt_test_summary, ge_test_summary]) all_tests_rows = pd.concat([dbt_test_rows, ge_test_rows]) - # ===== Populate summary stats for rows total, passed, failed ===== - all_tests_summary = set_summary_stats(all_tests_summary, project_id, logger) - - # ========================= Save results ========================= - # To flat file, useful for debugging - all_tests_summary.to_excel(f"./generated_files/{project_id}/all_tests_summary.xlsx") - all_tests_rows.to_excel(f"./generated_files/{project_id}/all_tests_rows.xlsx") - - # To DB - save_tests_to_db(all_tests_rows, all_tests_summary, project_id, logger) - - logger.info( - "Ping!!! ... DOT run " - + str(run_id) - + " complete for project " - + str(project_id) - + ". 😊" - ) + if all_tests_summary.shape[0] > 0: + + # ===== Populate summary stats for rows total, passed, failed ===== + all_tests_summary = set_summary_stats(all_tests_summary, project_id, logger) + + # ========================= Save results ========================= + # To flat file, useful for debugging + all_tests_summary.to_excel(f"./generated_files/{project_id}/all_tests_summary.xlsx") + all_tests_rows.to_excel(f"./generated_files/{project_id}/all_tests_rows.xlsx") + + # To DB + save_tests_to_db(all_tests_rows, all_tests_summary, project_id, logger) + + logger.info( + "Ping!!! ... DOT run " + + str(run_id) + + " complete for project " + + str(project_id) + + ". 😊" + ) + else: + logger.info( + "Ooops!!! ... DOT run " + + str(run_id) + + " or project " + + str(project_id) + + " has no test results." + ) def run_dot_tests(project_id, logger, run_id): diff --git a/dot/utils/utils.py b/dot/utils/utils.py index 7c71b32..3d44a65 100644 --- a/dot/utils/utils.py +++ b/dot/utils/utils.py @@ -565,7 +565,7 @@ def get_test_rows( entity_df[column_name].isin( test_results_df.value_field.unique() ), - "uuid", + unique_column_name, ].tolist() break # Rest are basic id fields @@ -842,7 +842,6 @@ def set_summary_stats( return tests_summary - def _get_entity(conn_dot: pg.extensions.connection, query: str) -> str: """ Gets entity name from entity_id diff --git a/setup_hooks.sh b/setup_hooks.sh index 09f6501..c581bd1 100755 --- a/setup_hooks.sh +++ b/setup_hooks.sh @@ -1,3 +1,3 @@ #!/bin/bash -echo $'#/bin/sh\nblack .\nfor f in `git diff --name-only | grep ".py"`; do python lint.py -p $f; done; pytest dot/self_tests/unit; pytest dot/self_tests/integration'> .git/hooks/pre-commit +echo $'#/bin/sh\nblack .\nfor f in `git diff --name-only | grep ".py"`; do python lint.py -p $f || exit 1; done; pytest dot/self_tests/unit; pytest dot/self_tests/integration'> .git/hooks/pre-commit chmod +x .git/hooks/pre-commit