diff --git a/README.md b/README.md index 8b205ba..bb20bcd 100644 --- a/README.md +++ b/README.md @@ -937,45 +937,11 @@ by adding a new feature or solving a bug, please follow the following guidelines ##### Using Docker -The recommended way is to run self-tests in Docker, as this is how dot is typically deployed and -ensures you're testing the exact same environment. +The Docker build provided above to run DOT, also includes self-test. So once you have the container running, all you +need to do is .. -- Set [dot_config.yml](dot/self_tests/data/base_self_test/dot_config.yml) at directory -`dot/self_tests/data/base_self_test` as follows ... - -``` -dot: - save_passed_tests: False - output_schema_suffix: tests -dot_db: - type: postgres - host: dot_db - user: postgres - pass: "{{ env_var('POSTGRES_PASSWORD') }}" - port: 5432 - dbname: dot_db - schema: self_tests_dot - threads: 4 -Muso_db: - type: postgres - host: dot_db - user: postgres - pass: "{{ env_var('POSTGRES_PASSWORD') }}" - port: 5432 - dbname: dot_db - schema: self_tests_public - threads: 4 -``` - -- Start a terminal on the container -``` -docker exec -it dot /bin/bash -``` -- Run the tests -``` -cd dot -pytest self_tests/unit -``` +1. `exec -it dot /bin/bash` +2. `pytest dot/self_tests/unit` ##### On your local machine @@ -1017,7 +983,6 @@ And finally you can run the tests from a terminal as follows: pytest dot/self_tests/unit ``` - #### Guidelines for adding new tests - Existing tests are at [the self-tests folder](dot/self_tests/unit) - All tests extend the [test base class](dot/self_tests/unit/base_self_test_class.py) that diff --git a/db/dot/1-schema.sql b/db/dot/1-schema.sql index 46e9183..73f398f 100644 --- a/db/dot/1-schema.sql +++ b/db/dot/1-schema.sql @@ -17,13 +17,17 @@ CREATE TABLE IF NOT EXISTS dot.test_types( library VARCHAR(300) NOT NULL, description VARCHAR(1000) NOT NULL, scope VARCHAR(300) CHECK(scope in ('column','single_table', 'multi_table','any')), - example_test_parameters VARCHAR(1000) NULL + uses_parameters BOOLEAN NOT NULL, + uses_column BOOLEAN NOT NULL ); CREATE TABLE IF NOT EXISTS dot.test_parameters_interface( test_type VARCHAR(300) NOT NULL, - parameter VARCHAR(300) NULL, - parameter_type VARCHAR(300) CHECK(parameter_type IN ('function_argument','sql_statement')), + parameter VARCHAR(300) NOT NULL, + parameter_type VARCHAR(300) CHECK(parameter_type IN ('entity any field', 'entity id field', 'entity columns boolean logic', + 'view/table', 'entity date field', 'one of (hour, day, week)', + 'entity numeric field','sql statement','list of values')), + example VARCHAR(300) NOT NULL, description VARCHAR(1000) NOT NULL, UNIQUE (test_type, parameter), CONSTRAINT fk_test_type @@ -46,10 +50,12 @@ CREATE TABLE IF NOT EXISTS dot.scenario_test_types( CREATE TABLE IF NOT EXISTS dot.projects( project_id VARCHAR(300) PRIMARY KEY, description VARCHAR(1000) NOT NULL, - created_on TIMESTAMP WITH TIME ZONE NOT NULL, active BOOLEAN, project_schema VARCHAR(300) NULL, - contacts VARCHAR(1000) NULL + contacts VARCHAR(1000) NULL, + date_added TIMESTAMP WITH TIME ZONE NOT NULL, + date_modified TIMESTAMP WITH TIME ZONE NOT NULL, + last_updated_by VARCHAR(200) NOT NULL ); CREATE TABLE IF NOT EXISTS dot.run_log ( @@ -76,6 +82,9 @@ CREATE TABLE IF NOT EXISTS dot.configured_entities ( entity_name VARCHAR(300), entity_category VARCHAR(300), entity_definition VARCHAR(4096), + date_added TIMESTAMP WITH TIME ZONE NOT NULL, + date_modified TIMESTAMP WITH TIME ZONE NOT NULL, + last_updated_by VARCHAR(200) NOT NULL, Primary Key (entity_id), CONSTRAINT fk_entity_category FOREIGN KEY(entity_category) @@ -217,4 +226,36 @@ BEGIN RETURN QUERY EXECUTE 'SELECT row_to_json(dot_model__'|| entity || ') from ' || results_schema || '.dot_model__' || entity || ' WHERE ' || id_col || '=''' || id_col_val || ''''; END; $$ LANGUAGE 'plpgsql'; +CREATE OR REPLACE FUNCTION dot.configured_entities_insert() +RETURNS TRIGGER +LANGUAGE plpgsql +AS $$ +declare + KEY_STRING text; +BEGIN + -- If you change how this UUID is generated, be sure to also change how it is created in get_test_id in /utils/utils.py + KEY_STRING := new.entity_name || new.entity_category || new.entity_definition; + NEW.entity_id := uuid_generate_v3(uuid_ns_oid(), KEY_STRING); + new.date_added := NOW(); + new.date_modified := NOW(); + RETURN NEW; +END; +$$; + +CREATE OR REPLACE FUNCTION dot.configured_entities_update() +RETURNS TRIGGER +LANGUAGE plpgsql +AS $$ +BEGIN + new.date_modified := NOW(); + RETURN NEW; +END; +$$; + +CREATE TRIGGER configured_entities_insert_trigger +BEFORE INSERT ON dot.configured_entities +FOR EACH ROW EXECUTE PROCEDURE dot.configured_entities_insert() ; +CREATE TRIGGER configured_entities_update_trigger +BEFORE UPDATE ON dot.configured_entities +FOR EACH ROW EXECUTE PROCEDURE dot.configured_entities_update() ; diff --git a/db/dot/2-upload_static_data.sql b/db/dot/2-upload_static_data.sql index bfaa20b..a07d156 100644 --- a/db/dot/2-upload_static_data.sql +++ b/db/dot/2-upload_static_data.sql @@ -25,38 +25,37 @@ INSERT INTO dot.scenarios VALUES('ASSESS-1', 'Inconsistent data', 'Process error INSERT INTO dot.scenarios VALUES('TREAT-1', 'Incorrect treatment', 'Process errors', 'Incorrect treatment', 'Outliers', 'Drug protocol not followed for Malaria treatment; FP for people on tubal ligation, pregnant or had vasectomy'); -- dot.test_types -INSERT INTO dot.test_types VALUES('relationships', 'dbt', 'Test missing relationships between records', 'multi_table', 'name: danger_signs_with_no_pregnancy| to: ref(''pregnancy'')| field: uuid'); -INSERT INTO dot.test_types VALUES('unique', 'dbt', 'Test to confirm uniqueness ', 'column', ''); -INSERT INTO dot.test_types VALUES('not_negative_string_column', 'dbt', 'Test to confirm all positive', 'column', 'name: patient_age_in_years'); -INSERT INTO dot.test_types VALUES('not_null', 'dbt', 'Test to confirm if null', 'column', ''); -INSERT INTO dot.test_types VALUES('accepted_values', 'dbt', 'Test to confirm values adhere to specified list', 'column', 'values: [True, False]'); -INSERT INTO dot.test_types VALUES('custom_sql', 'dbt', 'Custom SQL, if rows returned test failed', 'any', '""select - reported, - reported_by_parent as chw_uuid, - count(*) -from {{ ref(''household_visit'') }} -group by 1, 2 -having count(*) > 100""'); -INSERT INTO dot.test_types VALUES('possible_duplicate_forms', 'dbt', 'Test to confirm duplicate records', 'single_table', 'table_specific_reported_date: reported| table_specific_patient_uuid: patient_id| table_specific_uuid: uuid'); -INSERT INTO dot.test_types VALUES('associated_columns_not_null', 'dbt', 'Test to confirm related columns not null', 'column', ''); -INSERT INTO dot.test_types VALUES('expect_similar_means_across_reporters', 'great_expectations', 'Test to compare means across reporters (eg of temperature)', 'column', ''); -INSERT INTO dot.test_types VALUES('fake_expectation_for_test_purposes', 'great_expectations', 'Great expectation test test, ignore', 'column', ''); -INSERT INTO dot.test_types VALUES('expression_is_true', 'dbt', 'Test to confirm a value of an expression given a condition', 'any', 'name: "t_referral_follow_up_negative"| expression: "not(treat_malnutrition and danger_sign)"| condition: "not(fu_ref_rec or fu_rec)"'); +INSERT INTO dot.test_types VALUES('relationships', 'dbt', 'Test missing relationships between records', 'multi_table', true, true); +INSERT INTO dot.test_types VALUES('unique', 'dbt', 'Test to confirm uniqueness ', 'column', false,true); +INSERT INTO dot.test_types VALUES('not_negative_string_column', 'dbt', 'Test to confirm all positive', 'column', false, true); +INSERT INTO dot.test_types VALUES('not_null', 'dbt', 'Test to confirm if null', 'column', false, true); +INSERT INTO dot.test_types VALUES('accepted_values', 'dbt', 'Test to confirm values adhere to specified list', 'column', true, true); +INSERT INTO dot.test_types VALUES('custom_sql', 'dbt', 'Custom SQL, if rows returned test failed', 'any', true, false); +INSERT INTO dot.test_types VALUES('possible_duplicate_forms', 'dbt', 'Test to confirm duplicate records', 'single_table', true, false); +INSERT INTO dot.test_types VALUES('associated_columns_not_null', 'dbt', 'Test to confirm related columns not null', 'column', true, false); +INSERT INTO dot.test_types VALUES('expect_similar_means_across_reporters', 'great_expectations', 'Test to compare means across reporters (eg of temperature)', 'column', true, false); +INSERT INTO dot.test_types VALUES('expression_is_true', 'dbt', 'Test to confirm a value of an expression given a condition', 'any', true, false); -- dot.test_parameters_interface -INSERT INTO dot.test_parameters_interface VALUES('relationships', 'name', 'function_argument', 'Name of the test'); -INSERT INTO dot.test_parameters_interface VALUES('relationships', 'reference', 'function_argument', 'Referenced field to be checked if missing'); -INSERT INTO dot.test_parameters_interface VALUES('relationships', 'field', 'function_argument', 'Field being checked'); -INSERT INTO dot.test_parameters_interface VALUES('not_negative_string_column', 'name', 'function_argument', 'Name of column to be check3ed for non-negative values'); -INSERT INTO dot.test_parameters_interface VALUES('accepted_values', 'values', 'function_argument', 'List of accepted values for the field being checked'); -INSERT INTO dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_reported_date', 'function_argument', 'Column which indicates when form created'); -INSERT INTO dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_patient_uuid', 'function_argument', 'Column which holds to patient uuid'); -INSERT INTO dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_uuid', 'function_argument', 'UUID for records in the table (form) being checked'); -INSERT INTO dot.test_parameters_interface VALUES('custom_sql', '', 'sql_statement', 'Custom SQL to use to determine test fails, SQL is defined in columns test_parameter'); -INSERT INTO dot.test_parameters_interface VALUES('expression_is_true', 'name', 'function_argument', 'Name of the test'); -INSERT INTO dot.test_parameters_interface VALUES('expression_is_true', 'condition', 'function_argument', 'Where clause of rows that are going to be checked'); -INSERT INTO dot.test_parameters_interface VALUES('expression_is_true', 'expression', 'function_argument', 'If not true, the row fails the test'); +-- INSERT INTO dot.test_parameters_interface VALUES('relationships', 'name', 'function_argument', 'Name of the test'); +INSERT INTO dot.test_parameters_interface VALUES('relationships', 'reference', 'view/table', $$ref('dot_model__ancview_pregnancy')$$, 'Referenced field to be checked if missing'); +INSERT INTO dot.test_parameters_interface VALUES('relationships', 'field', 'entity any field', 'uuid', 'Field being checked'); +-- INSERT INTO dot.test_parameters_interface VALUES('not_negative_string_column', 'name', 'function_argument', 'Name of column to be check3ed for non-negative values'); +INSERT INTO dot.test_parameters_interface VALUES('accepted_values', 'values', 'list of values', $$["dog","cat","ostrich"]$$,'List of accepted values for the field being checked'); +INSERT INTO dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_reported_date', 'entity date field', 'reported', 'Column which indicates when form created'); +INSERT INTO dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_patient_uuid', 'entity id field', 'patient_id', 'Column which holds to patient uuid'); +INSERT INTO dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_uuid', 'entity id field', 'uuid', 'UUID for records in the table (form) being checked'); +INSERT INTO dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_period', 'one of (hour, day, week)', 'day','Specified period to check for duplicates (hour, day, week)'); +INSERT INTO dot.test_parameters_interface VALUES('custom_sql', 'query', 'sql statement', $$SELECT COUNT(*) WHERE COLOR='green'$$,'Custom SQL to use to determine test fails, SQL is defined in columns test_parameter'); +-- INSERT INTO dot.test_parameters_interface VALUES('expression_is_true', 'name', 'function_argument', 'Name of the test'); +INSERT INTO dot.test_parameters_interface VALUES('expression_is_true', 'condition', 'entity columns boolean logic', '(patient_age_in_months<24) and (malaria_give_act is not null)','Where clause of rows that are going to be checked'); +INSERT INTO dot.test_parameters_interface VALUES('expression_is_true', 'expression', 'entity columns boolean logic', 'malaria_act_dosage is not null', 'If not true, the row fails the test'); +INSERT INTO dot.test_parameters_interface VALUES('expect_similar_means_across_reporters', 'key', 'entity id field', 'reported_by', 'The key to check means by, ie a person-specific id'); +INSERT INTO dot.test_parameters_interface VALUES('expect_similar_means_across_reporters', 'quantity', 'entity numeric field', 'temperature', 'The name of the numeric field to analyze for variation'); +INSERT INTO dot.test_parameters_interface VALUES('expect_similar_means_across_reporters', 'form_name', 'entity id field', 'dot_model__iccmview_assessment', 'The name of entity view where data is'); +INSERT INTO dot.test_parameters_interface VALUES('expect_similar_means_across_reporters', 'id_column', 'entity any field', 'reported_by', 'The id column to group by for mean'); -- Seems like a duplicate of key? + -- dot.scenario_test_types INSERT INTO dot.scenario_test_types VALUES('MISSING-1', 'associated_columns_not_null'); diff --git a/db/dot/3-upload_sample_data.sql b/db/dot/3-upload_sample_data.sql index 35a3a57..9b460c3 100644 --- a/db/dot/3-upload_sample_data.sql +++ b/db/dot/3-upload_sample_data.sql @@ -1,5 +1,5 @@ -INSERT INTO dot.projects SELECT 'Muso', 'Muso project', '2021-12-07 00:00:00+00', 'true', 'public'; -INSERT INTO dot.projects SELECT 'Brac', 'Brac project', '2021-12-07 00:00:00+00', 'true', 'public'; +INSERT INTO dot.projects SELECT 'Muso', 'Muso project', true, 'public', null, '2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'; +INSERT INTO dot.projects SELECT 'Brac', 'Brac project', true, 'public', null, '2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'; -- entity categories INSERT INTO dot.entity_categories VALUES('anc', 'Antenatal care'); @@ -13,21 +13,21 @@ INSERT INTO dot.entity_categories VALUES('pnc', 'Postnatal care'); INSERT INTO dot.configured_entities VALUES('b05f1f9c-2176-46b0-8e8f-d6690f696b9b', 'ancview_danger_sign', 'anc', '{{ config(materialized=''view'') }} {% set schema = %} select * -from {{ schema }}.ancview_danger_sign'); +from {{ schema }}.ancview_danger_sign','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('66f5d13a-8f74-4f97-836b-334d97932781', 'ancview_delivery', 'anc', '{{ config(materialized=''view'') }} {% set schema = %} select * -from {{ schema }}.ancview_delivery'); +from {{ schema }}.ancview_delivery','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('638ed10b-3a2f-4f18-9ca1-ebf23563fdc0', 'ancview_pregnancy', 'anc', '{{ config(materialized=''view'') }} {% set schema = %} select ap.*, ap.lmp as lmp_date, DATE_PART(''day'', reported - lmp) as days_since_lmp -from {{ schema }}.ancview_pregnancy ap'); +from {{ schema }}.ancview_pregnancy ap','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('8ccab0bf-383e-4e41-9437-2b1c5007ba80', 'ancview_pregnancy_visit', 'anc', '{{ config(materialized=''view'') }} {% set schema = %} select * -from {{ schema }}.ancview_pregnancy_visit'); +from {{ schema }}.ancview_pregnancy_visit','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('f41fe8ee-ee1c-49dd-ae3d-c473daf441d5', 'chv', 'core', '{{ config(materialized=''view'') }} {% set schema = %} with source_data as ( @@ -38,19 +38,19 @@ with source_data as ( {{ schema }}.iccmview_assessment ) select * -from source_data'); +from source_data','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('6ba8075f-6f35-4ff1-be3a-4c75d0884bf4', 'fpview_follow_up', 'fp', '{{ config(materialized=''view'') }} {% set schema = %} select * -from {{ schema }}.fpview_follow_up'); +from {{ schema }}.fpview_follow_up','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'fpview_registration', 'fp', '{{ config(materialized=''view'') }} {% set schema = %} select * -from {{ schema }}.fpview_registration'); +from {{ schema }}.fpview_registration','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('173793ff-491d-4c73-8d0b-3903a82d3796', 'hhview_visits', 'core', '{{ config(materialized=''view'') }} {% set schema = %} select * -from {{ schema }}.hhview_visits'); +from {{ schema }}.hhview_visits','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('baf349c9-c919-40ff-a611-61ddc59c2d52', 'iccmview_assessment', 'iccm', '{{ config(materialized=''view'') }} {% set schema = %} -- select * @@ -69,20 +69,20 @@ from {{ schema }}.formview_assessment fa -- should be maybe a left join with iccmview_assessment where ia.uuid = ua.uuid - and fa.uuid = ua.uuid'); + and fa.uuid = ua.uuid','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('50f31569-f2fc-4dc6-af49-4268381e7c13', 'iccmview_assessment_follow_up', 'iccm', '{{ config(materialized=''view'') }} {% set schema = %} with source_data as ( select * from {{ schema }}.iccmview_assessment_follow_up ) select * -from source_data'); +from source_data','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('d0645118-bd68-4eba-8ead-fad114be86b7', 'mnview_follow_up', 'mn', '{{ config(materialized=''view'') }} {% set schema = %} -select * from {{ schema }}.mnview_follow_up'); +select * from {{ schema }}.mnview_follow_up','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('57a9fd48-51d8-4dc0-bbd1-a6e0405696cd', 'mnview_registration', 'mn', '{{ config(materialized=''view'') }} {% set schema = %} -select * from {{ schema }}.mnview_registration'); +select * from {{ schema }}.mnview_registration','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('fade2413-8504-443f-b161-1c5470fc1df3', 'patient', 'core', '{{ config(materialized=''view'') }} {% set schema = %} with source_data as ( @@ -93,33 +93,34 @@ with source_data as ( where type = ''person'' ) select * -from source_data'); +from source_data','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); INSERT INTO dot.configured_entities VALUES('eaea6e4c-a455-4f04-bb36-4bab0f6ba1a3', 'pncview_visits', 'pnc', '{{ config(materialized=''view'') }} {% set schema = %} with source_data as ( select * from {{ schema }}.pncview_visits ) select * -from source_data'); +from source_data','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); -- Note these UUIDs get reset by the trigger -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '549c0575-e64c-3605-85a9-70356a23c4d2', 'MISSING-1', 3, 'Patient ID is not null', '', '', '638ed10b-3a2f-4f18-9ca1-ebf23563fdc0', 'not_null', 'patient_id', '', NULL, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); +-- Note these UUIDs get reset by the trigger +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '549c0575-e64c-3605-85a9-70356a23c4d2', 'MISSING-1', 3, 'Patient ID is not null', '', '', '6a4d1463-281e-34b4-9620-609756dbbaf5', 'not_null', 'patient_id', '', NULL, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); -- ? -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '8aca2bee-9e95-3f8a-90e9-153714e05367', 'INCONSISTENT-1', 5, 'Patient age is not negative', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'not_negative_string_column', 'patient_age_in_years', '', '{"name": "patient_age_in_years"}', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '8aca2bee-9e95-3f8a-90e9-153714e05367', 'INCONSISTENT-1', 5, 'Patient age is not negative', '', '', '569b9515-eb80-39ab-a537-f6ef571dee64', 'not_negative_string_column', 'patient_age_in_years', '', '{"name": "patient_age_in_years"}', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); -- ? -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '52d7352e-56ee-3084-9c67-e5ab24afc3a3', 'DUPLICATE-1', 3, 'UUID is not unique', '', '', '6ba8075f-6f35-4ff1-be3a-4c75d0884bf4', 'unique', 'uuid', '', NULL, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '52d7352e-56ee-3084-9c67-e5ab24afc3a3', 'DUPLICATE-1', 3, 'UUID is not unique', '', '', '1739a0b0-5a61-391f-a3b6-0aab7e2fe0b9', 'unique', 'uuid', '', NULL, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); -- ? -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '935e6b61-b664-3eab-9d67-97c2c9c2bec0', 'INCONSISTENT-1', 3, 'Disallowed FP methods entered in form', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'accepted_values', 'fp_method_being_used', '', $${"values": ["oral mini-pill (progestogen)", "male condom", "female sterilization", "iud", "oral combination pill", "implants", "injectible"]}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '935e6b61-b664-3eab-9d67-97c2c9c2bec0', 'INCONSISTENT-1', 3, 'Disallowed FP methods entered in form', '', '', '569b9515-eb80-39ab-a537-f6ef571dee64', 'accepted_values', 'fp_method_being_used', '', $${"values": ["oral mini-pill (progestogen)", "male condom", "female sterilization", "iud", "oral combination pill", "implants", "injectible"]}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); -- ?? -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '0cdc9702-91e0-3499-b6f0-4dec12ad0f08', 'ASSESS-1', 3, 'Pregnancy danger signs with no pregnancy record', '', '', 'b05f1f9c-2176-46b0-8e8f-d6690f696b9b', 'relationships', 'pregnancy_uuid', '', $${"name": "danger_signs_with_no_pregnancy", "to": "ref('dot_model__ancview_pregnancy')", "field": "uuid"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '0cdc9702-91e0-3499-b6f0-4dec12ad0f08', 'ASSESS-1', 3, 'Pregnancy danger signs with no pregnancy record', '', '', '5a6b486d-87fa-347e-888e-0b6c11db7cd7', 'relationships', 'pregnancy_uuid', '', $${"name": "danger_signs_with_no_pregnancy", "to": "ref('dot_model__ancview_pregnancy')", "field": "uuid"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); -- MDSF-2 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '8b3f974c-16f2-4048-920c-f28086b9b411', 'MISSED-3', 9, 'Missing danger sign follow up (MDSF-2)', '', '', '638ed10b-3a2f-4f18-9ca1-ebf23563fdc0', 'relationships', 'uuid', '', $${"name": "missed_danger_sign_followup", "to": "ref('dot_model__ancview_danger_sign')", "field": "pregnancy_uuid", "where": "danger_sign_at_reg=True" }$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '8b3f974c-16f2-4048-920c-f28086b9b411', 'MISSED-3', 9, 'Missing danger sign follow up (MDSF-2)', '', '', '6a4d1463-281e-34b4-9620-609756dbbaf5', 'relationships', 'uuid', '', $${"name": "missed_danger_sign_followup", "to": "ref('dot_model__ancview_danger_sign')", "field": "pregnancy_uuid", "where": "danger_sign_at_reg=True" }$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); -- MAVF-1 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '1305077b-718d-4a0c-b08c-2bb57f104357', 'MISSED-3', 8, 'Expectant women should be followed up by a health worker (MAVF-1)', '', '', '638ed10b-3a2f-4f18-9ca1-ebf23563fdc0', 'relationships', 'uuid', '', $${"name": "missed_anc_visit_followup", "to": "ref('dot_model__ancview_pregnancy_visit')", "field": "pregnancy_uuid"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '1305077b-718d-4a0c-b08c-2bb57f104357', 'MISSED-3', 8, 'Expectant women should be followed up by a health worker (MAVF-1)', '', '', '6a4d1463-281e-34b4-9620-609756dbbaf5', 'relationships', 'uuid', '', $${"name": "missed_anc_visit_followup", "to": "ref('dot_model__ancview_pregnancy_visit')", "field": "pregnancy_uuid"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); -- GE-1 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '0cdc9702-91e0-3499-b6f0-4dec12ad0f18', 'BIAS-1', 6, 'Test for miscalibrated thermometer (GE-1)', '', '', 'baf349c9-c919-40ff-a611-61ddc59c2d52', 'expect_similar_means_across_reporters', 'child_temperature_pre_chw', '', $${"key": "reported_by","quantity": "child_temperature_pre_chw","form_name": "dot_model__iccmview_assessment","id_column": "reported_by"}$$, '2022-01-19 20:00:00.000 -0500', '2022-01-19 20:00:00.000 -0500', 'Medic unknown'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '0cdc9702-91e0-3499-b6f0-4dec12ad0f18', 'BIAS-1', 6, 'Test for miscalibrated thermometer (GE-1)', '', '', '658f3ea9-d9ed-3dc2-8477-c5cc68bb44eb', 'expect_similar_means_across_reporters', 'child_temperature_pre_chw', '', $${"key": "reported_by","quantity": "child_temperature_pre_chw","form_name": "dot_model__iccmview_assessment","id_column": "reported_by"}$$, '2022-01-19 20:00:00.000 -0500', '2022-01-19 20:00:00.000 -0500', 'Medic unknown'); -- ?? -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '62665f35-bff9-4304-a496-76619c895a19', 'MISSED-1', 3, 'Patient with no assessment', '', '', 'fade2413-8504-443f-b161-1c5470fc1df3', 'custom_sql', '', '', +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '62665f35-bff9-4304-a496-76619c895a19', 'MISSED-1', 3, 'Patient with no assessment', '', '', 'e8f3abe6-a25e-3581-b8dc-8f9919269689', 'custom_sql', '', '', format('{%s: %s}', to_json('query'::text), to_json($query$ @@ -140,9 +141,9 @@ where (CURRENT_DATE::date - pna.patient_reported::date) >= 1095 $query$::text) )::json, '2022-02-01 19:00:00.000 -0500', '2022-02-01 19:00:00.000 -0500', 'Example'); -- WT-1 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '3081f033-e8f4-4f3b-aea8-36f8c5df05dc', 'INCONSISTENT-1', 8, 'Wrong treatment/dosage arising from wrong age of children (WT-1)', '', '', 'baf349c9-c919-40ff-a611-61ddc59c2d52', 'expression_is_true', '', '', $${"name": "t_under_24_months_wrong_dosage", "expression": "malaria_act_dosage is not null", "condition": "(patient_age_in_months<24) and (malaria_give_act is not null)"}$$, '2022-02-14 19:00:00.000 -0500', '2022-02-14 19:00:00.000 -0500', 'MoH'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '3081f033-e8f4-4f3b-aea8-36f8c5df05dc', 'INCONSISTENT-1', 8, 'Wrong treatment/dosage arising from wrong age of children (WT-1)', '', '', '658f3ea9-d9ed-3dc2-8477-c5cc68bb44eb', 'expression_is_true', '', '', $${"name": "t_under_24_months_wrong_dosage", "expression": "malaria_act_dosage is not null", "condition": "(patient_age_in_months<24) and (malaria_give_act is not null)"}$$, '2022-02-14 19:00:00.000 -0500', '2022-02-14 19:00:00.000 -0500', 'MoH'); -- NFP-1 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', 'c4a3da8f-32f4-4e9b-b135-354de203ca90', 'TREAT-1', 6, 'Test for new family planning method (NFP-1)', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'custom_sql', '', '', +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', 'c4a3da8f-32f4-4e9b-b135-354de203ca90', 'TREAT-1', 6, 'Test for new family planning method (NFP-1)', '', '', '569b9515-eb80-39ab-a537-f6ef571dee64', 'custom_sql', '', '', format('{%s: %s}', to_json('query'::text), to_json($query$ @@ -167,7 +168,7 @@ format('{%s: %s}', $query$::text) )::json,'2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); -- LMP-1 -INSERT INTO dot.configured_tests VALUES (TRUE, 'Muso', '3081f033-e8f4-4f3b-aea8-36f8c5df05ec','INCONSISTENT-1',9,'Erroneous LMP Date (LMP-1)','10','Put a validation on the application that no LMP should be less than 4 weeks at the time of registration','638ed10b-3a2f-4f18-9ca1-ebf23563fdc0','custom_sql','','', +INSERT INTO dot.configured_tests VALUES (TRUE, 'Muso', '3081f033-e8f4-4f3b-aea8-36f8c5df05ec','INCONSISTENT-1',9,'Erroneous LMP Date (LMP-1)','10','Put a validation on the application that no LMP should be less than 4 weeks at the time of registration','6a4d1463-281e-34b4-9620-609756dbbaf5','custom_sql','','', format('{%s: %s}', to_json('query'::text), to_json($query$ @@ -212,20 +213,19 @@ format('{%s: %s}', -- on cnt.days_since_lmp = ap.days_since_lmp -- where cnt.proportion>1','2022-02-15 20:00:00.000 -0500','2022-02-15 20:00:00.000 -0500','Leah'); -- PDF-1 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', 'baadb20f-7efb-3ebd-bfc8-57561466f310', 'DUPLICATE-1', 7, 'Some CHWs may mistakenly register a pregnancy more than once (PDF-1)', '', '', '638ed10b-3a2f-4f18-9ca1-ebf23563fdc0', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "reported", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Leah'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', 'baadb20f-7efb-3ebd-bfc8-57561466f310', 'DUPLICATE-1', 7, 'Some CHWs may mistakenly register a pregnancy more than once (PDF-1)', '', '', '6a4d1463-281e-34b4-9620-609756dbbaf5', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "reported", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Leah'); -- PDF-2 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '36d33837-bd92-370a-963a-264a4d5b2bac', 'DUPLICATE-1', 6, 'Same day repeat cases for pregnancy visits (PDF-2)', '', '', '8ccab0bf-383e-4e41-9437-2b1c5007ba80', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "reported", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Mourice'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '36d33837-bd92-370a-963a-264a4d5b2bac', 'DUPLICATE-1', 6, 'Same day repeat cases for pregnancy visits (PDF-2)', '', '', 'a35cf3bc-e054-3c85-acd7-0b46ac4ece77', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "reported", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Mourice'); -- PDF-3 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', 'ab59ada1-5cfd-3f1b-9549-aa93c3d575ae', 'DUPLICATE-1', 6, 'Same day repeat cases for family planning duplicate records (PDF-3)', '', '', '6ba8075f-6f35-4ff1-be3a-4c75d0884bf4', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "reported", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Mourice'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', 'ab59ada1-5cfd-3f1b-9549-aa93c3d575ae', 'DUPLICATE-1', 6, 'Same day repeat cases for family planning duplicate records (PDF-3)', '', '', '1739a0b0-5a61-391f-a3b6-0aab7e2fe0b9', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "reported", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Mourice'); -- PDF-4 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '68ea1480-b6b0-33b1-adc4-71a843ecb437', 'DUPLICATE-1', 8, 'FP same day repeat cases - some within a short time interval (PDF-4)', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "reported", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Leah'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '68ea1480-b6b0-33b1-adc4-71a843ecb437', 'DUPLICATE-1', 8, 'FP same day repeat cases - some within a short time interval (PDF-4)', '', '', '569b9515-eb80-39ab-a537-f6ef571dee64', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "reported", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Leah'); -- PDF-5 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', 'eeafde14-6515-30dc-a51c-c5079209bcdb', 'DUPLICATE-1', 5, 'Multiple forms of the same activity submitted in a day (PDF-5)', '', '', 'baf349c9-c919-40ff-a611-61ddc59c2d52', 'possible_duplicate_forms', '', '', $${"table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Medic unknown'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', 'eeafde14-6515-30dc-a51c-c5079209bcdb', 'DUPLICATE-1', 5, 'Multiple forms of the same activity submitted in a day (PDF-5)', '', '', '658f3ea9-d9ed-3dc2-8477-c5cc68bb44eb', 'possible_duplicate_forms', '', '', $${"table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Medic unknown'); -- PDF-6 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '2660b519-9946-3e12-9b92-46d4321b1d56', 'DUPLICATE-1', 5, 'Multiple forms of the same activity submitted in a day (PDF-6)', '', '', '50f31569-f2fc-4dc6-af49-4268381e7c13', 'possible_duplicate_forms', '', '', $${"table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Medic unknown'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '2660b519-9946-3e12-9b92-46d4321b1d56', 'DUPLICATE-1', 5, 'Multiple forms of the same activity submitted in a day (PDF-6)', '', '', '1cb91f66-9b67-328f-b5c5-3ab78435e99d', 'possible_duplicate_forms', '', '', $${"table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Medic unknown'); -- PDF-7 -INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '99ac4950-13df-3777-bd27-923e74be9dcb', 'DUPLICATE-1', 7, 'Multiple reporting of specific PNC visits (PDF-7)', '', '', 'eaea6e4c-a455-4f04-bb36-4bab0f6ba1a3', 'possible_duplicate_forms', '', '', $${"table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Leah'); - +INSERT INTO dot.configured_tests VALUES(TRUE, 'Muso', '99ac4950-13df-3777-bd27-923e74be9dcb', 'DUPLICATE-1', 7, 'Multiple reporting of specific PNC visits (PDF-7)', '', '', '33accce9-9367-3d11-8272-a7fba412717c', 'possible_duplicate_forms', '', '', $${"table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Leah'); 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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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The tests DOT will run are defined here. 

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_nameEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_nameEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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{{data_table.selectedRow.entity_id}};","pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":false,"dynamicBindingPathList":[{"key":"body"}],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["entity_definition.text","appsmith.user.name","entity_name.text","entity_category.selectedOptionValue","data_table.selectedRow.entity_id"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Entities_EditQuery","deleted":false,"gitSyncId":"62af748ac6fbda2fd153a5ed_62b0c317c6fbda2fd153a65c"},{"pluginType":"DB","pluginId":"postgres-plugin","unpublishedAction":{"name":"Entity_Categories_Dropdown","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Entities","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"select \n description as \"label\",\n entity_category as \"value\"\nfrom \n dot.entity_categories\norder by \n description","pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":true,"dynamicBindingPathList":[],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":[],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"Entity_Categories_Dropdown","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Entities","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"select \n description as \"label\",\n entity_category as \"value\"\nfrom \n dot.entity_categories\norder by \n description","pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":true,"dynamicBindingPathList":[],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":[],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Entities_Entity_Categories_Dropdown","deleted":false,"gitSyncId":"62af748ac6fbda2fd153a5ed_62b0ce94c6fbda2fd153a663"},{"pluginType":"DB","pluginId":"postgres-plugin","unpublishedAction":{"name":"SelectQuery","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Categories","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"SELECT * FROM dot.\"entity_categories\"\nWHERE \"description\" ilike '%{{data_table.searchText || \"\"}}%'\nORDER BY \"{{data_table.sortOrder.column || 'entity_category'}}\" {{data_table.sortOrder.order || 'ASC'}}\nLIMIT {{data_table.pageSize}}\nOFFSET {{(data_table.pageNo - 1) * data_table.pageSize}};","pluginSpecifiedTemplates":[{"value":false}]},"executeOnLoad":true,"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["data_table.sortOrder.column || 'entity_category'","data_table.sortOrder.order || 'ASC'","data_table.pageSize","data_table.searchText || \"\"","(data_table.pageNo - 1) * data_table.pageSize"],"userSetOnLoad":true,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"SelectQuery","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Categories","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"SELECT * FROM dot.\"entity_categories\"\nWHERE \"description\" ilike '%{{data_table.searchText || \"\"}}%'\nORDER BY \"{{data_table.sortOrder.column || 'entity_category'}}\" {{data_table.sortOrder.order || 'ASC'}}\nLIMIT {{data_table.pageSize}}\nOFFSET {{(data_table.pageNo - 1) * data_table.pageSize}};","pluginSpecifiedTemplates":[{"value":false}]},"executeOnLoad":true,"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["data_table.sortOrder.column || 'entity_category'","data_table.sortOrder.order || 'ASC'","data_table.pageSize","data_table.searchText || \"\"","(data_table.pageNo - 1) * data_table.pageSize"],"userSetOnLoad":true,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Categories_SelectQuery","deleted":false,"gitSyncId":"62af748ac6fbda2fd153a5ed_62b1d3d3c6fbda2fd153a6aa"},{"pluginType":"DB","pluginId":"postgres-plugin","unpublishedAction":{"name":"EditQuery","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Categories","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"UPDATE dot.\"entity_categories\" SET\n \"entity_category\" = '{{entity_category.text}}',\n\t\t\"description\" = '{{description.text}}'\nWHERE \"entity_category\" = {{data_table.selectedRow.entity_category}};","pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":false,"dynamicBindingPathList":[{"key":"body"}],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["entity_category.text","data_table.selectedRow.entity_category","description.text"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"EditQuery","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Categories","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"UPDATE dot.\"entity_categories\" SET\n \"entity_category\" = '{{entity_category.text}}',\n\t\t\"description\" = '{{description.text}}'\nWHERE \"entity_category\" = {{data_table.selectedRow.entity_category}};","pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":false,"dynamicBindingPathList":[{"key":"body"}],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["entity_category.text","data_table.selectedRow.entity_category","description.text"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Categories_EditQuery","deleted":false,"gitSyncId":"62af748ac6fbda2fd153a5ed_62b1d3d3c6fbda2fd153a6ad"},{"pluginType":"DB","pluginId":"postgres-plugin","unpublishedAction":{"name":"DeleteQuery","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Categories","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"DELETE FROM dot.\"entity_categories\"\n WHERE \"entity_category\" = {{data_table.triggeredRow.entity_category}};","pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":false,"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["data_table.triggeredRow.entity_category"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"DeleteQuery","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Categories","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"DELETE FROM dot.\"entity_categories\"\n WHERE \"entity_category\" = {{data_table.triggeredRow.entity_category}};","pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":false,"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["data_table.triggeredRow.entity_category"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Categories_DeleteQuery","deleted":false,"gitSyncId":"62af748ac6fbda2fd153a5ed_62b1d3d3c6fbda2fd153a6ac"},{"pluginType":"DB","pluginId":"postgres-plugin","unpublishedAction":{"name":"InsertQuery","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Categories","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"INSERT INTO dot.\"entity_categories\" (\n\t\"entity_category\",\n\t\"description\")\nVALUES (\n\t'{{insert_form.formData.entity_category}}',\n\t'{{insert_form.formData.description}}');","pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":false,"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["insert_form.formData.description","insert_form.formData.entity_category"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"InsertQuery","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Categories","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"INSERT INTO dot.\"entity_categories\" (\n\t\"entity_category\",\n\t\"description\")\nVALUES (\n\t'{{insert_form.formData.entity_category}}',\n\t'{{insert_form.formData.description}}');","pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":false,"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["insert_form.formData.description","insert_form.formData.entity_category"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Categories_InsertQuery","deleted":false,"gitSyncId":"62af748ac6fbda2fd153a5ed_62b1d3d3c6fbda2fd153a6ab"}],"actionCollectionList":[{"unpublishedCollection":{"name":"JSFunctions","pageId":"Tests","pluginId":"js-plugin","pluginType":"JS","actions":[],"archivedActions":[],"body":"export default {\n\tallowUpdate: () => !!configured_tests.selectedRows.length,\n\tgetIds: () => {\n\t\treturn `(${configured_tests.selectedRows.map(item => `\\'${item.test_id}\\'`).join(\", \")})`\n\t},\n\tbulkUpdate: () => {\n\t\tlet test_activated_b = test_activated_bulk.isChecked;\n\t\tBulk_Update_Test_Activated.run(() => {\n\t\t\tshowAlert('Successfully updated test activation status');\n\t\t\tcloseModal('Activate_Tests_Modal');\n\t\t\tresetWidget('test_activated_bulk');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_activated_bulk': test_activated_b, 'test_ids': this.getIds()});\n\t},\n\tbulkDelete: () => {\n\t\tBulk_Delete_Tests.run(() => {\n\t\t\tshowAlert('Successfully deleted tests');\n\t\t\tcloseModal('Delete_Tests_Modal');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_ids': this.getIds()});\n\t},\n\t// Flag to say if a test_type uses test_parameters in configured_tests\n\ttestUsesParameters: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Parameters.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\t// Flag to say if a test_type uses columns in configured_tests\n\ttestUsesColumn: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Column.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\t\n}","variables":[]},"publishedCollection":{"name":"JSFunctions","pageId":"Tests","pluginId":"js-plugin","pluginType":"JS","actions":[],"archivedActions":[],"body":"export default {\n\tallowUpdate: () => !!configured_tests.selectedRows.length,\n\tgetIds: () => {\n\t\treturn `(${configured_tests.selectedRows.map(item => `\\'${item.test_id}\\'`).join(\", \")})`\n\t},\n\tbulkUpdate: () => {\n\t\tlet test_activated_b = test_activated_bulk.isChecked;\n\t\tBulk_Update_Test_Activated.run(() => {\n\t\t\tshowAlert('Successfully updated test activation status');\n\t\t\tcloseModal('Activate_Tests_Modal');\n\t\t\tresetWidget('test_activated_bulk');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_activated_bulk': test_activated_b, 'test_ids': this.getIds()});\n\t},\n\tbulkDelete: () => {\n\t\tBulk_Delete_Tests.run(() => {\n\t\t\tshowAlert('Successfully deleted tests');\n\t\t\tcloseModal('Delete_Tests_Modal');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_ids': this.getIds()});\n\t},\n\t// Flag to say if a test_type uses test_parameters in configured_tests\n\ttestUsesParameters: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Parameters.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\t// Flag to say if a test_type uses columns in configured_tests\n\ttestUsesColumn: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Column.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\t\n}","variables":[]},"id":"Tests_JSFunctions","deleted":false,"gitSyncId":"62928debc18cc05f7bf4919d_629914458a009422ab1df061"}],"editModeTheme":{"name":"Classic","displayName":"Classic","isSystemTheme":true,"deleted":false},"publishedTheme":{"name":"Classic","displayName":"Classic","isSystemTheme":true,"deleted":false}} \ No newline at end of file diff --git a/dot/self_tests/data/expected/extract_df_from_dbt_test_results_json.csv b/dot/self_tests/data/expected/extract_df_from_dbt_test_results_json.csv index adf252f..d3f1719 100644 --- a/dot/self_tests/data/expected/extract_df_from_dbt_test_results_json.csv +++ b/dot/self_tests/data/expected/extract_df_from_dbt_test_results_json.csv @@ -1,10 +1,10 @@ ,run_id,test_id,entity_id,test_type,column_name,id_column_name,test_parameters,test_status,test_status_message,failed_tests_view,failed_tests_view_sql -test.dbt_model_1.not_negative_string_column_dot_model__fpview_registration_value__value.e15d766b3b,4541476c-814e-43fe-ab38-786f36beecbc,54196c00-98cf-3b57-a5e0-155c726552da,95bd0f60-ab59-48fc-a62e-f256f5f3e6de,not_negative_string_column,value,,{'name': 'value'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__fpview_registration_value," SELECT array_agg(dot_model__fpview_registration.uuid) AS uuid_list +test.dbt_model_1.not_negative_string_column_dot_model__fpview_registration_value__value.e15d766b3b,4541476c-814e-43fe-ab38-786f36beecbc,85106e71-378d-3f8e-a9d6-2f056becf09b,b22a0dd5-f26a-3f7a-a413-867b4c5b1882,not_negative_string_column,value,,{'name': 'value'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__fpview_registration_value," SELECT array_agg(dot_model__fpview_registration.uuid) AS uuid_list FROM self_tests_public_tests.dot_model__fpview_registration WHERE dot_model__fpview_registration.value::character varying::text ~~ '-%'::text HAVING count(*) > 0;" -test.dbt_model_1.not_null_dot_model__ancview_pregnancy_patient_id.af4157ba8c,4541476c-814e-43fe-ab38-786f36beecbc,8957b754-5db0-35e6-b648-98c932b70ea1,66f5d13a-8f74-4f97-836b-334d97932781,not_null,patient_id,,{},fail,"got 1 result, configured to fail if != 0",tr_dot_model__ancview_pregnancy_not_null_patient_id," SELECT dot_model__ancview_pregnancy.patient_id, +test.dbt_model_1.not_null_dot_model__ancview_pregnancy_patient_id.af4157ba8c,4541476c-814e-43fe-ab38-786f36beecbc,97f6844e-ec43-3a55-b8ba-0a5c27671ff6,3ed4d6ed-74b1-32cb-b74f-b51ebaa13294,not_null,patient_id,,{},fail,"got 1 result, configured to fail if != 0",tr_dot_model__ancview_pregnancy_not_null_patient_id," SELECT dot_model__ancview_pregnancy.patient_id, dot_model__ancview_pregnancy.value FROM self_tests_public_tests.dot_model__ancview_pregnancy WHERE dot_model__ancview_pregnancy.patient_id IS NULL;" -test.dbt_model_1.not_null_dot_model__fpview_registration_uuid.d2f7403403,4541476c-814e-43fe-ab38-786f36beecbc,8f15a2d1-3c4b-3a07-9143-e1e8c62a99c0,95bd0f60-ab59-48fc-a62e-f256f5f3e6de,not_null,uuid,,{},pass,,, +test.dbt_model_1.not_null_dot_model__fpview_registration_uuid.d2f7403403,4541476c-814e-43fe-ab38-786f36beecbc,38df794b-8f95-3404-8a83-e777a085a53b,b22a0dd5-f26a-3f7a-a413-867b4c5b1882,not_null,uuid,,{},pass,,, \ No newline at end of file diff --git a/dot/self_tests/data/queries/configured_tests_dbt_core.sql b/dot/self_tests/data/queries/configured_tests_dbt_core.sql index 9fdeb18..7e47ae2 100644 --- a/dot/self_tests/data/queries/configured_tests_dbt_core.sql +++ b/dot/self_tests/data/queries/configured_tests_dbt_core.sql @@ -2,14 +2,11 @@ INSERT INTO self_tests_dot.scenarios VALUES('MISSING-1', 'Missing fields', 'Data entry error', 'Form data entry error', 'Null fields', 'Blank fields'); INSERT INTO self_tests_dot.scenarios VALUES('INCONSISTENT-1', 'Inconsistent data', 'Data entry error', 'Form data entry error', 'Outliers', 'Jaundice alert=No when fever+jaundice; Incorrect LMP, wrong visit dates'); -INSERT INTO self_tests_dot.test_types VALUES('not_negative_string_column', 'dbt', 'Test to confirm all positive', 'column', 'name: patient_age_in_years'); -INSERT INTO self_tests_dot.test_types VALUES('not_null', 'dbt', 'Test to confirm if null', 'column', ''); - -INSERT INTO self_tests_dot.scenario_test_types VALUES('MISSING-1', 'not_null'); -INSERT INTO self_tests_dot.scenario_test_types VALUES('INCONSISTENT-1', 'not_negative_string_column'); +INSERT INTO self_tests_dot.test_types VALUES('not_negative_string_column', 'dbt', 'Test to confirm all positive', 'column', false, true); +INSERT INTO self_tests_dot.test_types VALUES('not_null', 'dbt', 'Test to confirm if null', 'column', false, true); -- non static data -entities and tests + -INSERT INTO self_tests_dot.projects SELECT 'Muso', 'Muso project', '2021-12-07 00:00:00+00', 'true', 'public'; +INSERT INTO self_tests_dot.projects SELECT 'Muso', 'Muso project', true, 'public', null, '2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'; INSERT INTO self_tests_dot.entity_categories VALUES('anc', 'antenatal care'); INSERT INTO self_tests_dot.entity_categories VALUES('fp', 'Family planning'); @@ -18,7 +15,7 @@ INSERT INTO self_tests_dot.entity_categories VALUES('fp', 'Family planning'); INSERT INTO self_tests_dot.configured_entities VALUES('66f5d13a-8f74-4f97-836b-334d97932781', 'ancview_pregnancy', 'anc', '{{ config(materialized=''view'') }} {% set schema = %} select * from -(values (''patient-id1'', ''1''), (NULL, ''2'')) x(patient_id, value)'); +(values (''patient-id1'', ''1''), (NULL, ''2'')) x(patient_id, value)','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); CREATE SCHEMA IF NOT EXISTS self_tests_public; CREATE TABLE self_tests_public.ancview_pregnancy ( @@ -28,13 +25,13 @@ CREATE TABLE self_tests_public.ancview_pregnancy ( INSERT INTO self_tests_public.ancview_pregnancy SELECT * FROM (values ('patient-id1', '1'), (NULL, '2')) x(patient_id, value); -INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', '549c0575-e64c-3605-85a9-70356a23c4d2', 'MISSING-1', 3, 'Patient ID is not null', '', '', '66f5d13a-8f74-4f97-836b-334d97932781', 'not_null', 'patient_id', '', NULL, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); +INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', '549c0575-e64c-3605-85a9-70356a23c4d2', 'MISSING-1', 3, 'Patient ID is not null', '', '', '3ed4d6ed-74b1-32cb-b74f-b51ebaa13294', 'not_null', 'patient_id', '', NULL, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); INSERT INTO self_tests_dot.configured_entities VALUES('95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'fpview_registration', 'fp', '{{ config(materialized=''view'') }} {% set schema = %} select * from -(values (''patient-id1'', ''1''), (''patient_id2'', ''2''), (''patient_id3'', ''-3'')) x(uuid, value)'); +(values (''patient-id1'', ''1''), (''patient_id2'', ''2''), (''patient_id3'', ''-3'')) x(uuid, value)','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); CREATE TABLE self_tests_public.fpview_registration ( uuid VARCHAR(300), @@ -43,8 +40,8 @@ CREATE TABLE self_tests_public.fpview_registration ( INSERT INTO self_tests_public.fpview_registration SELECT * FROM (values ('patient-id1', '1'), ('patient_id2', '2'), ('patient_id3', '-3')) x(uuid, value); -INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', '549c0575-e64c-3605-85a9-70356a23c4d2', 'MISSING-1', 3, 'UUID is not null', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'not_null', 'uuid', '', NULL, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); -INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', '8aca2bee-9e95-3f8a-90e9-153714e05367', 'INCONSISTENT-1', 5, 'value not negative', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'not_negative_string_column', 'value', '', $${"name": "value"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); +INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', '549c0575-e64c-3605-85a9-70356a23c4d2', 'MISSING-1', 3, 'UUID is not null', '', '', 'b22a0dd5-f26a-3f7a-a413-867b4c5b1882', 'not_null', 'uuid', '', NULL, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); +INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', '8aca2bee-9e95-3f8a-90e9-153714e05367', 'INCONSISTENT-1', 5, 'value not negative', '', '', 'b22a0dd5-f26a-3f7a-a413-867b4c5b1882', 'not_negative_string_column', 'value', '', $${"name": "value"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Example'); -- these are generated by the dbt stages; TODO split the file in 2 for some tests CREATE OR REPLACE VIEW self_tests_public_tests.dot_model__ancview_pregnancy diff --git a/dot/self_tests/data/queries/configured_tests_sample-improved.sql b/dot/self_tests/data/queries/configured_tests_sample-improved.sql index 14ca232..5864b27 100644 --- a/dot/self_tests/data/queries/configured_tests_sample-improved.sql +++ b/dot/self_tests/data/queries/configured_tests_sample-improved.sql @@ -2,18 +2,19 @@ INSERT INTO self_tests_dot.scenarios VALUES('DUPLICATE-1', 'Duplicate data', 'Data entry error', 'Duplicate data entered', 'Duplicate records', 'Multiple person records for the same person'); INSERT INTO self_tests_dot.scenarios VALUES('TREAT-1', 'Incorrect treatment', 'Process errors', 'Incorrect treatment', 'Outliers', 'Drug protocol not followed for Malaria treatment; FP for people on tubal ligation, pregnant or had vasectomy'); -INSERT INTO self_tests_dot.test_types VALUES('possible_duplicate_forms', 'dbt', 'Test to confirm duplicate records', 'single_table', 'table_specific_reported_date: reported| table_specific_patient_uuid: patient_id| table_specific_uuid: uuid'); -INSERT INTO self_tests_dot.test_types VALUES('custom_sql', 'dbt', 'Custom SQL, if rows returned test failed', 'any', '""select 1""'); +INSERT INTO self_tests_dot.test_types VALUES('possible_duplicate_forms', 'dbt', 'Test to confirm duplicate records', 'single_table', true, false); +INSERT INTO self_tests_dot.test_types VALUES('custom_sql', 'dbt', 'Custom SQL, if rows returned test failed', 'any', true, false); -INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_reported_date', 'function_argument', 'Column which indicates when form created'); -INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_patient_uuid', 'function_argument', 'Column which holds to patient uuid'); -INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_uuid', 'function_argument', 'UUID for records in the table (form) being checked'); +INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_reported_date', 'entity date field', 'reported', 'Column which indicates when form created'); +INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_patient_uuid', 'entity id field', 'patient_id', 'Column which holds to patient uuid'); +INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_uuid', 'entity id field', 'uuid', 'UUID for records in the table (form) being checked'); +INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_period', 'one of (hour, day, week)', 'day','Specified period to check for duplicates (hour, day, week)'); INSERT INTO self_tests_dot.scenario_test_types VALUES('DUPLICATE-1', 'possible_duplicate_forms'); INSERT INTO self_tests_dot.scenario_test_types VALUES('TREAT-1', 'custom_sql'); -- non static data -entities and tests + -INSERT INTO self_tests_dot.projects SELECT 'Muso', 'Muso project', '2021-12-07 00:00:00+00', 'true', 'public'; +INSERT INTO self_tests_dot.projects SELECT 'Muso', 'Muso project', true, 'public', null, '2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'; INSERT INTO self_tests_dot.entity_categories VALUES('anc', 'antenatal care'); INSERT INTO self_tests_dot.entity_categories VALUES('fp', 'Family planning'); @@ -23,7 +24,7 @@ INSERT INTO self_tests_dot.configured_entities VALUES('66f5d13a-8f74-4f97-836b-3 {% set schema = %} select * -from {{ schema }}.ancview_delivery'); +from {{ schema }}.ancview_delivery','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); -- same as above, this configured test cannot be run -- INSERT INTO self_tests_dot.configured_tests @@ -31,13 +32,13 @@ from {{ schema }}.ancview_delivery'); -- VALUES(TRUE, 'Muso', '7f78de0e-8268-3da6-8845-9a445457cc9a', 'DUPLICATE-1', 3, '', '', '', '66f5d13a-8f74-4f97-836b-334d97932781', 'possible_duplicate_forms', '', '', 'id_column', 'table_specific_reported_date: delivery_date| table_specific_patient_uuid: patient_id| table_specific_uuid: uuid| table_specific_period: day', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Lorenzo'); INSERT INTO self_tests_dot.configured_tests (test_activated, project_id, test_id, scenario_id, priority, description, impact, proposed_remediation, entity_id, test_type, column_name, column_description, id_column_name, test_parameters, date_added, date_modified, last_updated_by) -VALUES(TRUE, 'Muso', '7f78de0e-8268-3da6-8845-9a445457cc9a', 'DUPLICATE-1', 3, '', '', '', '66f5d13a-8f74-4f97-836b-334d97932781', 'possible_duplicate_forms', '', '', 'id_column', +VALUES(TRUE, 'Muso', '7f78de0e-8268-3da6-8845-9a445457cc9a', 'DUPLICATE-1', 3, '', '', '', 'adc007dd-2407-3dc2-95a7-002067e741f9', 'possible_duplicate_forms', '', '', 'id_column', $${"table_specific_reported_date": "delivery_date", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid", "table_specific_period": "day"}$$ , '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Lorenzo'); INSERT INTO self_tests_dot.configured_entities VALUES('95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'fpview_registration', 'fp', 'select * from (values (''patient-id1'', ''1''), (''patient_id2'', ''2''), (''patient_id3'', ''3'')) x(patient_id, value) -'); +','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); -- NFP-1 -- INSERT INTO self_tests_dot.configured_tests @@ -51,6 +52,6 @@ INSERT INTO self_tests_dot.configured_entities VALUES('95bd0f60-ab59-48fc-a62e-f -- LIMIT 2', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); INSERT INTO self_tests_dot.configured_tests (test_activated, project_id, test_id, scenario_id, priority, description, impact, proposed_remediation, entity_id, test_type, column_name, column_description, id_column_name, test_parameters, date_added, date_modified, last_updated_by) -VALUES(TRUE, 'Muso', 'c4a3da8f-32f4-4e9b-b135-354de203ca70', 'TREAT-1', 5, 'Test for new family planning method (NFP-1)', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'custom_sql', '', '', 'patient_id', +VALUES(TRUE, 'Muso', 'c4a3da8f-32f4-4e9b-b135-354de203ca70', 'TREAT-1', 5, 'Test for new family planning method (NFP-1)', '', '', '52aa8e99-5221-3aac-bca5-b52b80b90929', 'custom_sql', '', '', 'patient_id', $${"query": "SELECT patient_id as primary_table_id_field, 'dot_model__fpview_registration' as primary_table, value FROM {{ ref('dot_model__fpview_registration') }} a LIMIT 2"}$$ , '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); diff --git a/dot/self_tests/data/queries/configured_tests_sample.sql b/dot/self_tests/data/queries/configured_tests_sample.sql index 51bba75..a1b14aa 100644 --- a/dot/self_tests/data/queries/configured_tests_sample.sql +++ b/dot/self_tests/data/queries/configured_tests_sample.sql @@ -2,18 +2,19 @@ INSERT INTO self_tests_dot.scenarios VALUES('DUPLICATE-1', 'Duplicate data', 'Data entry error', 'Duplicate data entered', 'Duplicate records', 'Multiple person records for the same person'); INSERT INTO self_tests_dot.scenarios VALUES('TREAT-1', 'Incorrect treatment', 'Process errors', 'Incorrect treatment', 'Outliers', 'Drug protocol not followed for Malaria treatment; FP for people on tubal ligation, pregnant or had vasectomy'); -INSERT INTO self_tests_dot.test_types VALUES('possible_duplicate_forms', 'dbt', 'Test to confirm duplicate records', 'single_table', 'table_specific_reported_date: reported| table_specific_patient_uuid: patient_id| table_specific_uuid: uuid'); -INSERT INTO self_tests_dot.test_types VALUES('custom_sql', 'dbt', 'Custom SQL, if rows returned test failed', 'any', '""select 1""'); +INSERT INTO self_tests_dot.test_types VALUES('possible_duplicate_forms', 'dbt', 'Test to confirm duplicate records', 'single_table', true, false); +INSERT INTO self_tests_dot.test_types VALUES('custom_sql', 'dbt', 'Custom SQL, if rows returned test failed', 'any', true, false); -INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_reported_date', 'function_argument', 'Column which indicates when form created'); -INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_patient_uuid', 'function_argument', 'Column which holds to patient uuid'); -INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_uuid', 'function_argument', 'UUID for records in the table (form) being checked'); +INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_reported_date', 'entity date field', 'reported', 'Column which indicates when form created'); +INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_patient_uuid', 'entity id field', 'patient_id', 'Column which holds to patient uuid'); +INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_uuid', 'entity id field', 'uuid', 'UUID for records in the table (form) being checked'); +INSERT INTO self_tests_dot.test_parameters_interface VALUES('possible_duplicate_forms', 'table_specific_period', 'one of (hour, day, week)', 'day','Specified period to check for duplicates (hour, day, week)'); INSERT INTO self_tests_dot.scenario_test_types VALUES('DUPLICATE-1', 'possible_duplicate_forms'); INSERT INTO self_tests_dot.scenario_test_types VALUES('TREAT-1', 'custom_sql'); -- non static data -entities and tests + -INSERT INTO self_tests_dot.projects SELECT 'Muso', 'Muso project', '2021-12-07 00:00:00+00', 'true', 'public'; +INSERT INTO self_tests_dot.projects SELECT 'Muso', 'Muso project', true, 'public', null, '2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'; INSERT INTO self_tests_dot.entity_categories VALUES('anc', 'antenatal care'); INSERT INTO self_tests_dot.entity_categories VALUES('fp', 'Family planning'); @@ -23,17 +24,16 @@ INSERT INTO self_tests_dot.configured_entities VALUES('66f5d13a-8f74-4f97-836b-3 {% set schema = %} select * -from {{ schema }}.ancview_delivery'); +from {{ schema }}.ancview_delivery','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); -- same as above, this configured test cannot be run --- INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', '7f78de0e-8268-3da6-8845-9a445457cc9a', 'DUPLICATE-1', 3, '', '', '', '66f5d13a-8f74-4f97-836b-334d97932781', 'possible_duplicate_forms', '', '', 'table_specific_reported_date: delivery_date| table_specific_patient_uuid: patient_id| table_specific_uuid: uuid| table_specific_period: day', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Lorenzo'); -INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', '7f78de0e-8268-3da6-8845-9a445457cc9a', 'DUPLICATE-1', 3, '', '', '', '66f5d13a-8f74-4f97-836b-334d97932781', 'possible_duplicate_forms', '', '', +INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', '7f78de0e-8268-3da6-8845-9a445457cc9a', 'DUPLICATE-1', 3, '', '', '', 'adc007dd-2407-3dc2-95a7-002067e741f9', 'possible_duplicate_forms', '', '', $${"table_specific_uuid": "uuid", "table_specific_period": "day", "table_specific_patient_uuid": "patient_id", "table_specific_reported_date": "delivery_date"}$$ , '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Lorenzo'); INSERT INTO self_tests_dot.configured_entities VALUES('95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'fpview_registration', 'fp', 'select * from (values (''patient-id1'', ''1''), (''patient_id2'', ''2''), (''patient_id3'', ''3'')) x(patient_id, value) -'); +','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); -- NFP-1 --INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', 'c4a3da8f-32f4-4e9b-b135-354de203ca70', 'TREAT-1', 5, 'Test for new family planning method (NFP-1)', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'custom_sql', '', '', ' @@ -45,5 +45,5 @@ INSERT INTO self_tests_dot.configured_entities VALUES('95bd0f60-ab59-48fc-a62e-f -- LIMIT 2', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); -- INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', 'c4a3da8f-32f4-4e9b-b135-354de203ca70', 'TREAT-1', 5, 'Test for new family planning method (NFP-1)', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'custom_sql', '', '', $${"query": "SELECT patient_id as primary_table_id_field, 'dot_model__fpview_registration' as primary_table, value FROM {{ ref('dot_model__fpview_registration') }} a LIMIT 2"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); -INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', 'c4a3da8f-32f4-4e9b-b135-354de203ca70', 'TREAT-1', 5, 'Test for new family planning method (NFP-1)', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'custom_sql', '', '', +INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', 'c4a3da8f-32f4-4e9b-b135-354de203ca70', 'TREAT-1', 5, 'Test for new family planning method (NFP-1)', '', '', '52aa8e99-5221-3aac-bca5-b52b80b90929', 'custom_sql', '', '', $${"query": "SELECT patient_id as primary_table_id_field, 'dot_model__fpview_registration' as primary_table, value FROM {{ ref('dot_model__fpview_registration') }} a LIMIT 2"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Leah'); \ No newline at end of file diff --git a/dot/self_tests/data/queries/core_entities_creation.sql b/dot/self_tests/data/queries/core_entities_creation.sql index cd44706..e2d96a9 100644 --- a/dot/self_tests/data/queries/core_entities_creation.sql +++ b/dot/self_tests/data/queries/core_entities_creation.sql @@ -4,6 +4,6 @@ INSERT INTO self_tests_dot.configured_entities VALUES('b05f1f9c-2176-46b0-8e8f-d {% set schema = %} select * -from {{ schema }}.ancview_danger_sign'); +from {{ schema }}.ancview_danger_sign','2021-12-07 00:00:00+00','2021-12-07 00:00:00+00','Matt'); diff --git a/dot/self_tests/unit/test_dbt.py b/dot/self_tests/unit/test_dbt.py index 9f8b5ef..6a2a1c0 100644 --- a/dot/self_tests/unit/test_dbt.py +++ b/dot/self_tests/unit/test_dbt.py @@ -42,6 +42,10 @@ def test_extract_df_from_dbt_test_results_json( logger=setup_custom_logger("self_tests/output/test.log", logging.INFO), target_path="self_tests/data/dot_output_files/dbt/target", ) + + output.to_csv('self_tests/data/op.csv') + + expected = pd.read_csv( "self_tests/data/expected/extract_df_from_dbt_test_results_json.csv", index_col=0, diff --git a/dot/self_tests/unit/test_utils.py b/dot/self_tests/unit/test_utils.py index efc7c38..4edc6ec 100644 --- a/dot/self_tests/unit/test_utils.py +++ b/dot/self_tests/unit/test_utils.py @@ -48,8 +48,8 @@ def get_test_summary() -> Tuple[pd.DataFrame, uuid.UUID]: run_id = uuid.UUID("4541476c-814e-43fe-ab38-786f36beecbc") test_summary_row = { "run_id": run_id, - "test_id": "ef6bb39d-7a89-3972-b5b6-719d4435e7f9", - "entity_id": "95bd0f60-ab59-48fc-a62e-f256f5f3e6de", + "test_id": "8317ea22-70d1-32d2-b061-e25e0aac9f8e", + "entity_id": "52aa8e99-5221-3aac-bca5-b52b80b90929", "test_type": "custom_sql", "column_name": "", # "id_column_name": "patient_id", @@ -72,7 +72,7 @@ def test_get_test_id( generated_test_id = get_test_id( test_type="possible_duplicate_forms", - entity_id="66f5d13a-8f74-4f97-836b-334d97932781", + entity_id="adc007dd-2407-3dc2-95a7-002067e741f9", column="", project_id="Muso", test_parameters='''$$ @@ -84,7 +84,7 @@ def test_get_test_id( }$$ '''.replace('\n','') ) - expected_test_id = "0a055ffd-c753-3c27-9de9-a4665352513f" + expected_test_id = "5501f109-a017-3594-96ea-eb8438187509" self.assertEqual( expected_test_id, generated_test_id, @@ -107,7 +107,7 @@ def test_possible_duplicate_forms_test_malformed( "'7f78de0e-8268-3da6-8845-9a445457cc9a'," "'DUPLICATE-1'," "3, '', '', '', " - "'66f5d13a-8f74-4f97-836b-334d97932781'," + "'adc007dd-2407-3dc2-95a7-002067e741f9'," "'possible_duplicate_forms', '', ''," '''$${ 'table_specific_uuid': 'uuid', @@ -135,7 +135,7 @@ def test_custom_sql_test_malformed( INSERT INTO self_tests_dot.configured_tests VALUES(TRUE, 'Muso', 'c4a3da8f-32f4-4e9b-b135-354de203ca70', 'TREAT-1', 5, 'Test for new family planning method (NFP-1)', - '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'custom_sql', + '', '', '52aa8e99-5221-3aac-bca5-b52b80b90929', 'custom_sql', '', '', $${"query":"SELECT patient_id as primary_table_id_field, value @@ -158,7 +158,7 @@ def test_get_configured_tests_row_reference_error( with self.assertRaises(ReferenceError): _ = get_configured_tests_row( test_type="possible_duplicate_forms", - entity_id="66f5d13a-8f74-4f97-836b-334d97932781", + entity_id="adc007dd-2407-3dc2-95a7-002067e741f9", column="", project_id="Muso", test_parameters=''' @@ -180,13 +180,13 @@ def test_get_configured_tests_row( configured_tests_row = get_configured_tests_row( test_type="possible_duplicate_forms", - entity_id="66f5d13a-8f74-4f97-836b-334d97932781", + entity_id="adc007dd-2407-3dc2-95a7-002067e741f9", column="", project_id="Muso", test_parameters="{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'patient_id', 'table_specific_reported_date': 'delivery_date'}", ) - expected_test_id = "0a055ffd-c753-3c27-9de9-a4665352513f" + expected_test_id = "5501f109-a017-3594-96ea-eb8438187509" self.assertEqual( expected_test_id, configured_tests_row["test_id"], @@ -202,7 +202,7 @@ def test_get_configured_tests_row( "description": "", "impact": "", "proposed_remediation": "", - "entity_id": "66f5d13a-8f74-4f97-836b-334d97932781", + "entity_id": "adc007dd-2407-3dc2-95a7-002067e741f9", "test_type": "possible_duplicate_forms", "column_name": "", "column_description": "", @@ -224,7 +224,7 @@ def test_get_entity_id_from_name( mock_get_filename_safely.side_effect = self.mock_get_filename_safely self.assertEqual( - "66f5d13a-8f74-4f97-836b-334d97932781", + "adc007dd-2407-3dc2-95a7-002067e741f9", get_entity_id_from_name("Muso", "dot_model__ancview_delivery"), ) @@ -237,7 +237,7 @@ def test_get_entity_name_from_id( self.assertEqual( "dot_model__ancview_delivery", - get_entity_name_from_id("Muso", "66f5d13a-8f74-4f97-836b-334d97932781"), + get_entity_name_from_id("Muso", "adc007dd-2407-3dc2-95a7-002067e741f9"), ) @patch("utils.configuration_utils._get_filename_safely") diff --git a/dot/self_tests/unit/test_utils_schema_improved.py b/dot/self_tests/unit/test_utils_schema_improved.py index 8490c8b..86a60a9 100644 --- a/dot/self_tests/unit/test_utils_schema_improved.py +++ b/dot/self_tests/unit/test_utils_schema_improved.py @@ -49,12 +49,12 @@ def test_get_configured_tests_row( configured_tests_row = get_configured_tests_row( test_type="possible_duplicate_forms", - entity_id="66f5d13a-8f74-4f97-836b-334d97932781", + entity_id="adc007dd-2407-3dc2-95a7-002067e741f9", column="", project_id="Muso", test_parameters="{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'patient_id', 'table_specific_reported_date': 'delivery_date'}" ) - expected_test_id = "0a055ffd-c753-3c27-9de9-a4665352513f" + expected_test_id = "5501f109-a017-3594-96ea-eb8438187509" self.assertEqual( expected_test_id, configured_tests_row["test_id"], @@ -70,7 +70,7 @@ def test_get_configured_tests_row( "description": "", "impact": "", "proposed_remediation": "", - "entity_id": "66f5d13a-8f74-4f97-836b-334d97932781", + "entity_id": "adc007dd-2407-3dc2-95a7-002067e741f9", "test_type": "possible_duplicate_forms", "column_name": "", "column_description": "", @@ -151,7 +151,7 @@ def test_get_test_rows( test_summary_row = { "run_id": run_id, "test_id": "ef6bb39d-7a89-3972-b5b6-719d4435e7f9", - "entity_id": "95bd0f60-ab59-48fc-a62e-f256f5f3e6de", + "entity_id": "52aa8e99-5221-3aac-bca5-b52b80b90929", "test_type": "custom_sql", "column_name": "", "id_column_name": "patient_id",