From 6ef49063994eb683e424e887855e53c09c087e0c Mon Sep 17 00:00:00 2001 From: Matthew Harris Date: Fri, 9 Dec 2022 10:07:21 -0500 Subject: [PATCH 01/22] Added instructions for using airflow with remote dot and data databases --- README.md | 19 ++++++++++++++++++- 1 file changed, 18 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index a9235e5..1dc9fb2 100644 --- a/README.md +++ b/README.md @@ -707,7 +707,7 @@ NOTE: You might need to use docker-compose on some hosts. `docker compose -f docker-compose-with-airflow.yml down -v` -### Running the DOT in Airflow +### Running the DOT in Airflow (Demo) A DAG has been included which copies data from the uploaded DB dump into the DOT DB 'data_ScanProject1' schema, and then runs the toolkit against this data. To do this ... @@ -734,6 +734,23 @@ Or to run just DOT stage ... `airflow tasks test run_dot_project run_dot 2022-03-01` + +### Running the DOT in Airflow (Connecting to external databases) + +The following instructions illustrate how to use a local airflow environment, connecting with external databases for the data and DOT. + +**NOTE:** These are for illustrative purposes only. If using Airflow in production it's important that it is set up correctly +and does not expose a http connection to the internet, and also has adequate network security (firewal, strong password, etc) + +1. Edit [./dot/dot_config.yml] and set the correct parameters for your external dot_db +2. Create a section for your data databases and set connection parameters +3. If you have a DAG json file `dot_projects.json` already, deploy it into `./airflow/dags` +4. Run steps 1-11 in [Configuring/Building Airflow Docker environment](#Configuring/Building Airflow Docker environment) +5. Run steps 12 and 13, but use the values for your external databases you configured in `dot_config.yml` + +You will need to configure DOT tests and the DAG json file appropriately for your installation. + + #### Adding more projects If configuring Airflow in production, you will need to adjust `./docker/dot/dot_config.yml` accordingly. You can also From 0bfc56ed3c47a97543d99c9912c9dcdb3d22dda3 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 9 Dec 2022 23:12:26 +0000 Subject: [PATCH 02/22] Bump numpy from 1.20.3 to 1.22.0 in /dot Bumps [numpy](https://github.com/numpy/numpy) from 1.20.3 to 1.22.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v1.20.3...v1.22.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- dot/requirements_dot.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dot/requirements_dot.txt b/dot/requirements_dot.txt index e45e5be..0bb259d 100644 --- a/dot/requirements_dot.txt +++ b/dot/requirements_dot.txt @@ -70,7 +70,7 @@ nbformat==5.1.3 nest-asyncio==1.5.4 networkx==2.6.3 notebook==6.4.12 -numpy==1.20.3 +numpy==1.22.0 oauthlib==3.2.1 openpyxl==3.0.9 oscrypto==1.2.1 From f93a1b1a6c0f01aefeb10501c3927af011c46779 Mon Sep 17 00:00:00 2001 From: Lorenzo Rubio Date: Sat, 10 Dec 2022 19:03:04 +0100 Subject: [PATCH 03/22] add test for expression is true --- db/dot/4-upload_sample_dot_data.sql | 10 +- .../expected/integration/test_results.csv | 1152 +++++++++-------- .../integration/test_results_summary.csv | 40 +- 3 files changed, 621 insertions(+), 581 deletions(-) diff --git a/db/dot/4-upload_sample_dot_data.sql b/db/dot/4-upload_sample_dot_data.sql index db0be2d..f9d6a70 100644 --- a/db/dot/4-upload_sample_dot_data.sql +++ b/db/dot/4-upload_sample_dot_data.sql @@ -65,8 +65,9 @@ $${"table_specific_reported_date": "departure_time", "table_specific_patient_uui "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Matt'); INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', 'c4a3da8f-32f4-4e9b-b135-354de203ca90', 'TREAT-1', -5, 'Number of stops has a reasonible value', '', '', 'ca4513fa-96e0-3a95-a1a8-7f0c127ea82a', 'custom_sql', '', '', -format('{%s: %s}', +5, 'Number of stops has a reasonible value (as custom_sql)', '', '', 'ca4513fa-96e0-3a95-a1a8-7f0c127ea82a', +'custom_sql', '', '', format( + '{%s: %s}', to_json('query'::text), to_json($query$ select @@ -79,6 +80,11 @@ format('{%s: %s}', )::json, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Lorenzo'); +INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '3081f033-e8f4-4f3b-aea8-36f8c5df05dc', 'INCONSISTENT-1', +8, 'Price is a positive number for direct flights', '', '', 'ca4513fa-96e0-3a95-a1a8-7f0c127ea82a', 'expression_is_true', +'', '', $${"name": "t_direct_flights_positive_price", "expression": "price is not null and price > 0", +"condition": "stops = 'non-stop'"}$$, '2022-12-10 19:00:00.000 -0500', '2022-12-10 19:00:00.000 -0500', 'Lorenzo'); + COMMIT; diff --git a/dot/self_tests/data/expected/integration/test_results.csv b/dot/self_tests/data/expected/integration/test_results.csv index bd475c7..89c154b 100644 --- a/dot/self_tests/data/expected/integration/test_results.csv +++ b/dot/self_tests/data/expected/integration/test_results.csv @@ -1,572 +1,582 @@ ,test_result_id,run_id,test_id,entity_id,status,view_name,id_column_name,id_column_value -0,c3c714cd-9e3a-3883-8331-bbefac95c737,fce38b78-5b90-4662-9c14-d93c88fe5323,dac4c545-f610-3dae-ad82-1ddf27dae144,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,9074997b-f1f2-3efa-8354-64ecfbce502f 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+554,ba615e6f-d00e-3f94-a9d4-56338fcd3403,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,391ea306-1aed-3528-a736-2d1bc290ab5f +555,de4308e6-dcf0-3578-9461-095d063f4a1b,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,2d879b3a-f227-3eb7-943d-f1a96592afd4 +556,2da9f2fe-85d1-39a3-8a38-3996d0bfe25d,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,f065b5ab-4a1b-3aac-b951-b033955ffe45 +557,e73724f4-7d4e-36ac-9a4b-1b14c7e5a99a,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,2ceab1e0-b66a-37c5-8949-2d9ec81f8fc4 +558,9a49be0d-ae7a-3735-ac75-29eb449457db,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,63850baa-c0c0-3986-af19-8bbf082503f1 +559,1cb65d10-931a-390a-b685-adce27175059,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,89497188-ec76-31bb-8b31-3d678d9b29e6 +560,438fd365-d72b-3de0-b5ee-adeed56ccffe,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,104c7dec-cd9e-385f-acad-bd69012da521 +561,5d6baedc-0541-3a3d-886f-c502cceb0338,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,39a02112-9601-3618-9eb8-23542f5ea86a +562,54810c49-2704-3288-8559-0491d88268fc,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,c662bbe8-47b1-37ef-91ef-a7d866a63165 +563,3aa9cdd1-4e47-3273-91c0-e0ecd246c0a9,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,76f018a2-8ae5-3bf9-bc19-5e977e912091 +564,6015984c-956a-3e97-9107-afdc5670a5b2,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,7c24a1fb-0650-30ba-a25d-7163995174f6 +565,44f517f5-db52-33cc-82d5-fcd42fd29f29,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,48a649d3-88c7-31eb-99d3-3cf007967719 +566,65e250cb-6280-3b3b-8b6b-e49994a172ec,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,0b3150b1-2761-3407-b0bc-cb82a027632c +567,488f2011-6321-354a-bc13-81ab67070e14,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,6f4b6d8c-41c8-33b9-a6bc-71d629c5bd0b +568,a8f0055c-f424-322a-917f-6b9c9eb27175,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,1ff582c2-8a83-3452-9bce-0cc70965b32b +569,0e13cd75-f5a1-3d51-805d-44caf31f24ef,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,48a99b9f-994b-33d3-89d3-81e4cb12d861 +570,949761c6-c23d-3f5e-becf-c3c68f14aa7d,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,55dcb907-95d0-3066-91a0-38b4ae80b732 +571,89a444b5-b9c7-3698-b87a-fdd17fa26a2f,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,78e9aacf-cf7b-38ed-af29-ed5eb7751f59 +572,fa17946b-f9dc-39b1-b2b0-51191e0ba2b7,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_possible_duplicate_f,uuid,e04c091b-5219-3856-8d67-ba1553225989 +573,1b6b0301-3f58-3da3-ac47-f5e13bdd387e,c3c00663-2918-4ae0-90e7-3eb0b31b2451,7aa26bda-57e1-39b8-a3e9-979a3d882577,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_flight_with_no_a,uuid,e7431fec-cbb7-3217-aee5-7bcdb8ac9384 +574,f08eed99-2a4e-3502-b0c3-3417aafdee49,c3c00663-2918-4ae0-90e7-3eb0b31b2451,7aa26bda-57e1-39b8-a3e9-979a3d882577,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_flight_with_no_a,uuid,a589ea84-4e66-37e8-a187-746810c10d2c +575,440c7a2a-2d06-3f71-8066-1eb96c61ba85,c3c00663-2918-4ae0-90e7-3eb0b31b2451,7aa26bda-57e1-39b8-a3e9-979a3d882577,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_flight_with_no_a,uuid,c37def2e-a3d5-34df-863a-5672159c213a +576,7fd915f2-3c33-39ff-8e3f-c65dee5c9ba3,c3c00663-2918-4ae0-90e7-3eb0b31b2451,7aa26bda-57e1-39b8-a3e9-979a3d882577,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_flight_with_no_a,uuid,87c9d88a-0693-300d-a629-b7cbee1e5323 +577,f606f8de-0250-3741-9069-25ffac6f54db,c3c00663-2918-4ae0-90e7-3eb0b31b2451,7aa26bda-57e1-39b8-a3e9-979a3d882577,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,tr_dot_model__all_flight_data_flight_with_no_a,uuid,5ef0d847-9158-371f-b98b-089933021bf7 +578,81ee1c6d-c097-3413-8ef8-0e770c9129ae,c3c00663-2918-4ae0-90e7-3eb0b31b2451,aa1c361c-a9ba-350e-9959-e92a5654f7dc,7b689796-afde-3930-87be-ed8b7c7a0474,fail,tr_dot_model__all_airports_data_unique_airport,airport,Harbin Yangjiagang airport +579,8dedd850-5e78-32a4-89e7-45e0647c59a5,c3c00663-2918-4ae0-90e7-3eb0b31b2451,aa1c361c-a9ba-350e-9959-e92a5654f7dc,7b689796-afde-3930-87be-ed8b7c7a0474,fail,tr_dot_model__all_airports_data_unique_airport,airport,Belize +580,56f471f4-ca28-3b6c-92bd-5edf0ba367ce,c3c00663-2918-4ae0-90e7-3eb0b31b2451,3b30906a-2088-3f34-9fd3-e4d931c04ba4,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,fail,chv_tr_different_dot_model__all_flight_data_price_distribution,airline,British Airways diff --git a/dot/self_tests/data/expected/integration/test_results_summary.csv b/dot/self_tests/data/expected/integration/test_results_summary.csv index 7ab17c1..5551519 100644 --- a/dot/self_tests/data/expected/integration/test_results_summary.csv +++ b/dot/self_tests/data/expected/integration/test_results_summary.csv @@ -1,5 +1,5 @@ ,run_id,test_id,entity_id,test_type,column_name,test_parameters,test_status,test_status_message,failed_tests_view,failed_tests_view_sql,rows_total,rows_failed,rows_passed -0,fce38b78-5b90-4662-9c14-d93c88fe5323,dac4c545-f610-3dae-ad82-1ddf27dae144,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( +0,c3c00663-2918-4ae0-90e7-3eb0b31b2451,dac4c545-f610-3dae-ad82-1ddf27dae144,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( SELECT dot_model__all_flight_data.stops AS value_field, count(*) AS n_records FROM self_tests_public_tests.dot_model__all_flight_data @@ -9,7 +9,7 @@ all_values.n_records FROM all_values WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 -1,fce38b78-5b90-4662-9c14-d93c88fe5323,a481c896-21be-3d8a-9156-bb5ca27c2b0e,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,custom_sql,," +1,c3c00663-2918-4ae0-90e7-3eb0b31b2451,a481c896-21be-3d8a-9156-bb5ca27c2b0e,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,custom_sql,," select distinct uuid, 'dot_model__all_flight_data' as primary_table, @@ -21,11 +21,35 @@ 'uuid'::text AS primary_table_id_field FROM self_tests_public_tests.dot_model__all_flight_data WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 -2,fce38b78-5b90-4662-9c14-d93c88fe5323,49aa2fd3-511c-3d84-a782-a5daf57f98da,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list +2,c3c00663-2918-4ae0-90e7-3eb0b31b2451,64368c3d-709b-32e7-a426-1a16f904cd56,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,expression_is_true,,"{'name': 't_direct_flights_positive_price', 'condition': ""stops = 'non-stop'"", 'expression': 'price is not null and price > 0'}",fail,"got 10 results, configured to fail if != 0",tr_dot_model__all_flight_data_t_direct_flights_p_p," WITH meet_condition AS ( + SELECT dot_model__all_flight_data.uuid, + dot_model__all_flight_data.departure_time, + dot_model__all_flight_data.airline, + dot_model__all_flight_data.origin_airport, + dot_model__all_flight_data.origin_iata, + dot_model__all_flight_data.destination_airport, + dot_model__all_flight_data.destination_iata, + dot_model__all_flight_data.stops, + dot_model__all_flight_data.price + FROM self_tests_public_tests.dot_model__all_flight_data + WHERE dot_model__all_flight_data.stops::text = 'non-stop'::text + ) + SELECT meet_condition.uuid, + meet_condition.departure_time, + meet_condition.airline, + meet_condition.origin_airport, + meet_condition.origin_iata, + meet_condition.destination_airport, + meet_condition.destination_iata, + meet_condition.stops, + meet_condition.price + FROM meet_condition + WHERE NOT (meet_condition.price IS NOT NULL AND meet_condition.price > 0::double precision);",1001,10,991 +3,c3c00663-2918-4ae0-90e7-3eb0b31b2451,49aa2fd3-511c-3d84-a782-a5daf57f98da,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list FROM self_tests_public_tests.dot_model__all_flight_data WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text HAVING count(*) > 0;",1001,1,1000 -3,fce38b78-5b90-4662-9c14-d93c88fe5323,983a5746-bea7-3072-9a80-2c1c6706ceed,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, +4,c3c00663-2918-4ae0-90e7-3eb0b31b2451,983a5746-bea7-3072-9a80-2c1c6706ceed,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, dot_model__all_flight_data.departure_time, dot_model__all_flight_data.airline, dot_model__all_flight_data.origin_airport, @@ -36,7 +60,7 @@ dot_model__all_flight_data.price FROM self_tests_public_tests.dot_model__all_flight_data WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 -4,fce38b78-5b90-4662-9c14-d93c88fe5323,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( +5,c3c00663-2918-4ae0-90e7-3eb0b31b2451,30c73263-50e2-3aaf-aee2-653c806bee36,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, dot_model__all_flight_data.airline AS patient_uuid_to_flag, count(dot_model__all_flight_data.uuid) AS number_of_records @@ -53,7 +77,7 @@ FROM possible_duplicate_combinations pdc LEFT JOIN self_tests_public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text HAVING count(*) > 0;",1001,274,727 -5,fce38b78-5b90-4662-9c14-d93c88fe5323,7aa26bda-57e1-39b8-a3e9-979a3d882577,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list +6,c3c00663-2918-4ae0-90e7-3eb0b31b2451,7aa26bda-57e1-39b8-a3e9-979a3d882577,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, dot_model__all_flight_data.origin_airport AS from_column_id FROM self_tests_public_tests.dot_model__all_flight_data) from_model @@ -61,10 +85,10 @@ FROM self_tests_public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL HAVING count(*) > 0;",1001,5,996 -6,fce38b78-5b90-4662-9c14-d93c88fe5323,aa1c361c-a9ba-350e-9959-e92a5654f7dc,7b689796-afde-3930-87be-ed8b7c7a0474,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, +7,c3c00663-2918-4ae0-90e7-3eb0b31b2451,aa1c361c-a9ba-350e-9959-e92a5654f7dc,7b689796-afde-3930-87be-ed8b7c7a0474,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, count(*) AS n_records FROM self_tests_public_tests.dot_model__all_airports_data WHERE dot_model__all_airports_data.airport IS NOT NULL GROUP BY dot_model__all_airports_data.airport HAVING count(*) > 1;",365,2,363 -7,fce38b78-5b90-4662-9c14-d93c88fe5323,3b30906a-2088-3f34-9fd3-e4d931c04ba4,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 +8,c3c00663-2918-4ae0-90e7-3eb0b31b2451,3b30906a-2088-3f34-9fd3-e4d931c04ba4,ca4513fa-96e0-3a95-a1a8-7f0c127ea82a,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 From 3c4403b7c1fc84ff72873a941a69e3f12fae6f5b Mon Sep 17 00:00:00 2001 From: Lorenzo Rubio Date: Sat, 10 Dec 2022 20:52:07 +0100 Subject: [PATCH 04/22] make lint checks fail if any of the files fails --- setup_hooks.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup_hooks.sh b/setup_hooks.sh index 09f6501..c581bd1 100755 --- a/setup_hooks.sh +++ b/setup_hooks.sh @@ -1,3 +1,3 @@ #!/bin/bash -echo $'#/bin/sh\nblack .\nfor f in `git diff --name-only | grep ".py"`; do python lint.py -p $f; done; pytest dot/self_tests/unit; pytest dot/self_tests/integration'> .git/hooks/pre-commit +echo $'#/bin/sh\nblack .\nfor f in `git diff --name-only | grep ".py"`; do python lint.py -p $f || exit 1; done; pytest dot/self_tests/unit; pytest dot/self_tests/integration'> .git/hooks/pre-commit chmod +x .git/hooks/pre-commit From 72c55d8e3d0fd6c6228a2329dcb0d80091eb667b Mon Sep 17 00:00:00 2001 From: Lorenzo Rubio Date: Sat, 10 Dec 2022 21:04:01 +0100 Subject: [PATCH 05/22] improve pylint scores --- docker/airflow/dags/run_dot_project.py | 145 +++++++++++++------------ docker/run_demo.py | 14 ++- dot/requirements_dot.txt | 2 +- 3 files changed, 83 insertions(+), 78 deletions(-) diff --git a/docker/airflow/dags/run_dot_project.py b/docker/airflow/dags/run_dot_project.py index 0256c2a..9f32f3f 100644 --- a/docker/airflow/dags/run_dot_project.py +++ b/docker/airflow/dags/run_dot_project.py @@ -20,11 +20,11 @@ def get_object( - object_name_in, - earliest_date_to_sync, - date_field, - source_conn_in, - columns_to_exclude, + object_name_in, + earliest_date_to_sync, + date_field, + source_conn_in, + columns_to_exclude, ): """ @@ -47,18 +47,9 @@ def get_object( connection = BaseHook.get_connection(source_conn_in) - sql_stmt = ( - "SELECT * FROM " - + connection.schema - + "." - + object_name_in - ) + sql_stmt = "SELECT * FROM " + connection.schema + "." + object_name_in if date_field != None: - sql_stmt += (" WHERE " - + date_field - + " >= '" - + earliest_date_to_sync - + "'") + sql_stmt += " WHERE " + date_field + " >= '" + earliest_date_to_sync + "'" print(sql_stmt) pg_hook = PostgresHook(postgres_conn_id=source_conn_in, schema=source_conn_in) pg_conn = pg_hook.get_conn() @@ -67,13 +58,13 @@ def get_object( data = cursor.fetchall() sql_stmt = ( - "SELECT column_name, data_type FROM INFORMATION_SCHEMA.COLUMNS WHERE table_name = '" - + object_name_in - + "'" - + "AND table_schema = '" - + connection.schema - + "' " - + " ORDER BY ordinal_position " + "SELECT column_name, data_type FROM INFORMATION_SCHEMA.COLUMNS WHERE table_name = '" + + object_name_in + + "'" + + "AND table_schema = '" + + connection.schema + + "' " + + " ORDER BY ordinal_position " ) print(sql_stmt) pg_hook = PostgresHook(postgres_conn_id=source_conn_in, schema=source_conn_in) @@ -85,16 +76,20 @@ def get_object( # Fail back to views if len(columns) == 0: sql_stmt = ( - "SELECT a.attname as \"column_name\"," - + " pg_catalog.format_type(a.atttypid, a.atttypmod) as \"data_type\" " - + " FROM pg_attribute a " - + " JOIN pg_class t on a.attrelid = t.oid " - + " JOIN pg_namespace s on t.relnamespace = s.oid " - + " WHERE a.attnum > 0 " - + " AND NOT a.attisdropped " - + " AND t.relname = '" + object_name_in + "' " - + " AND s.nspname = '" + connection.schema + "' " - + " ORDER BY a.attnum; " + 'SELECT a.attname as "column_name",' + + ' pg_catalog.format_type(a.atttypid, a.atttypmod) as "data_type" ' + + " FROM pg_attribute a " + + " JOIN pg_class t on a.attrelid = t.oid " + + " JOIN pg_namespace s on t.relnamespace = s.oid " + + " WHERE a.attnum > 0 " + + " AND NOT a.attisdropped " + + " AND t.relname = '" + + object_name_in + + "' " + + " AND s.nspname = '" + + connection.schema + + "' " + + " ORDER BY a.attnum; " ) print(sql_stmt) pg_hook = PostgresHook(postgres_conn_id=source_conn_in, schema=source_conn_in) @@ -136,7 +131,7 @@ def get_object( def save_object( - object_name_in, target_conn_in, data_in, column_list_in, type_list_in, source_db_in + object_name_in, target_conn_in, data_in, column_list_in, type_list_in, source_db_in ): """ @@ -164,16 +159,16 @@ def save_object( connection = BaseHook.get_connection(target_conn_in) connection_string = ( - "postgresql://" - + str(connection.login) - + ":" - + str(connection.password) - + "@" - + str(connection.host) - + ":" - + str(connection.port) - + "/" - + target_conn_in + "postgresql://" + + str(connection.login) + + ":" + + str(connection.password) + + "@" + + str(connection.host) + + ":" + + str(connection.port) + + "/" + + target_conn_in ) engine = create_engine( @@ -190,7 +185,7 @@ def save_object( # This will also drop any DOT model views onto this data if MODE == "replace": with PostgresHook( - postgres_conn_id=target_conn_in, schema=target_conn_in + postgres_conn_id=target_conn_in, schema=target_conn_in ).get_conn() as conn: cur = conn.cursor() query = f"DROP TABLE IF EXISTS {schema}.{object_name_in} CASCADE;" @@ -202,7 +197,7 @@ def save_object( # Test to see if schema exists, if not, create with PostgresHook( - postgres_conn_id=target_conn_in, schema=target_conn_in + postgres_conn_id=target_conn_in, schema=target_conn_in ).get_conn() as conn: cur = conn.cursor() query = f"CREATE SCHEMA IF NOT EXISTS {schema};" @@ -220,7 +215,7 @@ def save_object( using = f"USING {col}::{type}" query = f"ALTER TABLE {schema}.{object_name_in} ALTER COLUMN {col} TYPE {type} {using};" with PostgresHook( - postgres_conn_id=target_conn_in, schema=target_conn_in + postgres_conn_id=target_conn_in, schema=target_conn_in ).get_conn() as conn: cur = conn.cursor() print(query) @@ -228,12 +223,12 @@ def save_object( def sync_object( - object_name_in, - earliest_date_to_sync, - date_field, - source_conn_in, - target_conn_in, - columns_to_exclude, + object_name_in, + earliest_date_to_sync, + date_field, + source_conn_in, + target_conn_in, + columns_to_exclude, ): """ @@ -269,12 +264,14 @@ def sync_object( object_name_in, target_conn_in, data, column_list, type_list, source_conn_in ) + def drop_tables_in_dot_tests_schema(target_conn_in, schema_to_drop_from): """ We are syncing new data where new columns and columns types might change. - Postgres will prevent ALTER TABLE if any views exist, so we will drop all tables in the dot test schema. - These will be recreated in the dot run. - This assumes the dot tests schema is dot_data_tests (defined as variable "schema_to_drop_from"). + Postgres will prevent ALTER TABLE if any views exist, so we will drop all + tables in the dot test schema. These will be recreated in the dot run. + This assumes the dot tests schema is dot_data_tests + (defined as variable "schema_to_drop_from"). Input ----- @@ -288,21 +285,24 @@ def drop_tables_in_dot_tests_schema(target_conn_in, schema_to_drop_from): """ with PostgresHook( - postgres_conn_id=target_conn_in, schema=target_conn_in + postgres_conn_id=target_conn_in, schema=target_conn_in ).get_conn() as conn: cur = conn.cursor() query1 = f"SET search_path TO {schema_to_drop_from}" - query2 = f"DO $$ DECLARE " \ - f"r RECORD; " \ - f"BEGIN " \ - f"FOR r IN (SELECT table_name FROM information_schema.tables WHERE table_schema = current_schema()) " \ - f"LOOP " \ - f"EXECUTE 'DROP TABLE IF EXISTS ' || QUOTE_IDENT(r.table_name) || ' CASCADE'; " \ - f"END LOOP; " \ - f"END $$; " + query2 = ( + f"DO $$ DECLARE " + f"r RECORD; " + f"BEGIN " + f"FOR r IN (SELECT table_name FROM information_schema.tables WHERE table_schema = current_schema()) " + f"LOOP " + f"EXECUTE 'DROP TABLE IF EXISTS ' || QUOTE_IDENT(r.table_name) || ' CASCADE'; " + f"END LOOP; " + f"END $$; " + ) cur.execute(query1) cur.execute(query2) + def run_dot_app(project_id_in): """ Method to run the DOT. @@ -335,10 +335,10 @@ def default_config(): with DAG( - dag_id="run_dot_project", - schedule_interval="@weekly", - start_date=datetime(year=2022, month=3, day=1), - catchup=False, + dag_id="run_dot_project", + schedule_interval="@weekly", + start_date=datetime(year=2022, month=3, day=1), + catchup=False, ) as dag: config = json.loads(Variable.get("dot_config", default_var=default_config().read())) @@ -374,7 +374,7 @@ def default_config(): python_callable=drop_tables_in_dot_tests_schema, op_kwargs={ "target_conn_in": target_conn, - "schema_to_drop_from": schema_to_drop_from + "schema_to_drop_from": schema_to_drop_from, }, dag=dag, ) @@ -384,7 +384,10 @@ def default_config(): for i in range(len(objects_to_sync)): object_name = objects_to_sync[i]["object"] - if "date_field" in objects_to_sync[i] and objects_to_sync[i]["date_field"] != "": + if ( + "date_field" in objects_to_sync[i] + and objects_to_sync[i]["date_field"] != "" + ): date_field = objects_to_sync[i]["date_field"] else: date_field = None diff --git a/docker/run_demo.py b/docker/run_demo.py index 651f925..e967e44 100644 --- a/docker/run_demo.py +++ b/docker/run_demo.py @@ -10,7 +10,7 @@ url_demo_data = "https://drive.google.com/uc?id=157Iad8mHnwbZ_dAeLQy5XfLihhcpD6yc" filename_demo_data = "dot_demo_data.tar.gz" -url_dot_ui = "http://localhost:82/app/data-observation-toolkit/run-log-634491ea0da61b0e9f38760d?embed=True" +url_dot_ui = "http://localhost:82/app/data-observation-toolkit/run-log-634491ea0da61b0e9f38760d?embed=True" # pylint: disable=line-too-long # Check if db, appsmith and tar file are there and if so, delete them. os.chdir("demo/") @@ -30,12 +30,12 @@ # Open/Extract tarfile with tarfile.open(filename_demo_data) as my_tar: - my_tar.extractall('') + my_tar.extractall("") my_tar.close() with open("./db/.env") as f: - demo_pwd=f.read().split("=")[1] - os.environ['POSTGRES_PASSWORD'] = demo_pwd + demo_pwd = f.read().split("=")[1] + os.environ["POSTGRES_PASSWORD"] = demo_pwd # Composing and running container(s) print("Starting DOT...\n") @@ -49,8 +49,10 @@ webbrowser.open(url_dot_ui) -print("In case DOT was not opened in your browser, please go to this URL: " - "http://localhost:82/app/data-observation-toolkit/run-log-634491ea0da61b0e9f38760d?embed=True\n") +print( + "In case DOT was not opened in your browser, please go to this URL: " + "http://localhost:82/app/data-observation-toolkit/run-log-634491ea0da61b0e9f38760d?embed=True\n" +) input("Press return to stop DOT container\n") print("Container is being stopped - we hope you enjoyed this demo :)") docker.compose.stop() diff --git a/dot/requirements_dot.txt b/dot/requirements_dot.txt index e45e5be..5675334 100644 --- a/dot/requirements_dot.txt +++ b/dot/requirements_dot.txt @@ -1,5 +1,4 @@ agate==1.6.1 - appnope==0.1.2 argon2-cffi==21.1.0 asn1crypto==1.4.0 @@ -144,3 +143,4 @@ pytest-timeout==2.1.0 faker==15.1.1 faker-airtravel==0.4 flatten_json==0.1.13 +python-on-whales==0.53.0 From 970f04d98aea11b401a3cb115f4bce5905468b6b Mon Sep 17 00:00:00 2001 From: Matthew Harris Date: Sun, 4 Dec 2022 22:09:37 -0500 Subject: [PATCH 06/22] Seems sometimes column can be null, resulting in schema tests going in as column tests --- dot/utils/configuration_management.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/dot/utils/configuration_management.py b/dot/utils/configuration_management.py index 8c20723..0a768f3 100644 --- a/dot/utils/configuration_management.py +++ b/dot/utils/configuration_management.py @@ -339,10 +339,10 @@ def generate_tests_from_db(project_id, logger=logging.Logger): # test_parameters = "" # Update 'tests' node for this entity with non column-specific tests - if column_name in (None, ""): + if column_name in (None, "","null"): if "tests" not in config_options[entity_id]: config_options[entity_id]["tests"] = [] - if test_parameters not in ("", None): + if test_parameters not in ("", None,"null"): test = {test_type: test_parameters} config_options[entity_id]["tests"].append(test) From ed4937b67752bada4f5a2b68b1fe6470efb0eca2 Mon Sep 17 00:00:00 2001 From: Matthew Harris Date: Sun, 4 Dec 2022 22:36:09 -0500 Subject: [PATCH 07/22] Updates to the UI --- docker/appsmith/DOT App V2.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/appsmith/DOT App V2.json b/docker/appsmith/DOT App V2.json index 5d4b790..7bc05d1 100644 --- a/docker/appsmith/DOT App V2.json +++ b/docker/appsmith/DOT App V2.json @@ -1 +1 @@ -{"clientSchemaVersion":1.0,"serverSchemaVersion":6.0,"exportedApplication":{"name":"Data Observation Toolkit","isPublic":true,"pages":[{"id":"Run log","isDefault":true},{"id":"Run results","isDefault":false},{"id":"Failed tests","isDefault":false},{"id":"Projects","isDefault":false},{"id":"Entities","isDefault":false},{"id":"Categories","isDefault":false},{"id":"Tests","isDefault":false}],"publishedPages":[{"id":"Run log","isDefault":true},{"id":"Run results","isDefault":false},{"id":"Failed tests","isDefault":false},{"id":"Projects","isDefault":false},{"id":"Entities","isDefault":false},{"id":"Categories","isDefault":false},{"id":"Tests","isDefault":false}],"viewMode":false,"appIsExample":false,"unreadCommentThreads":0.0,"clonedFromApplicationId":"62bc52b4b293c75c978181fc","color":"#F1DEFF","icon":"pie-chart","slug":"data-observation-toolkit","evaluationVersion":2.0,"applicationVersion":2.0,"isManualUpdate":false,"deleted":false},"datasourceList":[{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"deleted":false,"gitSyncId":"627421964babdb1002f8325c_627421d24babdb1002f83263"}],"pageList":[{"unpublishedPage":{"name":"Failed 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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_nameEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_nameEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_nameEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_nameEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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' ' : params[0].description;\n return tooltip;\n}"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Tests_JSFunctions.getTestParameterDescription","deleted":false,"gitSyncId":"62c4319bfa65ed18bbd7c88a_62c4ccb38b0ebe338ec57994"},{"pluginType":"DB","pluginId":"postgres-plugin","unpublishedAction":{"name":"Test_Parameters_Cache","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Tests","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"select * from dot.test_parameters_interface","selfReferencingDataPaths":[],"pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":true,"dynamicBindingPathList":[],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":[],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"Test_Parameters_Cache","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Tests","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"select * from dot.test_parameters_interface","selfReferencingDataPaths":[],"pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":true,"dynamicBindingPathList":[],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":[],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Tests_Test_Parameters_Cache","deleted":false,"gitSyncId":"62c4319bfa65ed18bbd7c88a_62c4cc7e8b0ebe338ec57992"}],"actionCollectionList":[{"unpublishedCollection":{"name":"JSFunctions","pageId":"Tests","pluginId":"js-plugin","pluginType":"JS","actions":[],"archivedActions":[],"body":"export default {\n\tallowUpdate: () => !!configured_tests.selectedRows.length,\n\tgetIds: () => {\n\t\treturn `(${configured_tests.selectedRows.map(item => `\\'${item.test_id}\\'`).join(\", \")})`\n\t},\n\tbulkUpdate: () => {\n\t\tlet test_activated_b = test_activated_bulk.isChecked;\n\t\tBulk_Update_Test_Activated.run(() => {\n\t\t\tshowAlert('Successfully updated test activation status');\n\t\t\tcloseModal('Activate_Tests_Modal');\n\t\t\tresetWidget('test_activated_bulk');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_activated_bulk': test_activated_b, 'test_ids': this.getIds()});\n\t},\n\tbulkDelete: () => {\n\t\tBulk_Delete_Tests.run(() => {\n\t\t\tshowAlert('Successfully deleted tests');\n\t\t\tcloseModal('Delete_Tests_Modal');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_ids': this.getIds()});\n\t},\n\t// Flag to say if a test_type uses test_parameters in configured_tests\n\ttestUsesParameters: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Parameters.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\t// Flag to say if a test_type uses columns in configured_tests\n\ttestUsesColumn: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Column.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\tparamIsVisible: (test_type_in, param_in) => {\n\t\tconst params = Test_Parameters.data.map(item => { return item.test_type == test_type_in ? item.parameter : undefined;});\n\t\treturn params.includes(param_in);\n\t},\n\tgetEntityColumns: (project_id_in, entity_id_in, entity_name_in, data_type_in) => { \n\t\t//project_id_in = 'Brac';\n\t\t//entity_name_in = 'ancview_pregnancy';\n\t\t// JSON forms don't allow us to access selected label, unlike regular forms, so we need tor strip out artifacts\n\t\t// TODO Refactor test_parameters to lose dbt artifacts like ref('')\n\t\tentity_name_in = entity_name_in == undefined ? undefined : entity_name_in.replace(\"ref('dot_model__\",\"\").replace(\"')\",\"\");\n\t\t// Filter and subset\n\t\tvar columns = Entity_column_names_cache.data.filter(function (el) {\n \t\treturn (el.entity_id == entity_id_in || entity_id_in == undefined) &&\n\t\t\t\t (el.entity_name == entity_name_in || entity_name_in == undefined) &&\n\t\t\t\t (el.project_id == project_id_in || project_id_in == undefined) &&\n\t\t\t\t (el.data_type == data_type_in || data_type_in == undefined);\n\t\t}).map( ({label, value}) => ({label, value} ) );\n\t\treturn columns;\n\t},\n\tgetTestParameterDescription: (test_parameter_in) => { \n\t\t//test_parameter_in = 'values';\n\t\t// Filter \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? ' ' : params[0].description;\n\t\treturn tooltip;\n\t},\n\tgetTestParameterExample: (test_parameter_in) => { \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar example = params.length == 0 ? ' ' : params[0].example;\n\t\treturn example;\n\t},\n\tgetTestTypeDescription: (test_type_in) => { \n\t\t// Filter \n\t\tvar params = Test_Types_Cache.data.filter(function (el) {\n \t\treturn el.test_type == test_type_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? ' ' : params[0].description;\n\t\treturn tooltip;\n\t}\n}","variables":[],"userPermissions":[]},"publishedCollection":{"name":"JSFunctions","pageId":"Tests","pluginId":"js-plugin","pluginType":"JS","actions":[],"archivedActions":[],"body":"export default {\n\tallowUpdate: () => !!configured_tests.selectedRows.length,\n\tgetIds: () => {\n\t\treturn `(${configured_tests.selectedRows.map(item => `\\'${item.test_id}\\'`).join(\", \")})`\n\t},\n\tbulkUpdate: () => {\n\t\tlet test_activated_b = test_activated_bulk.isChecked;\n\t\tBulk_Update_Test_Activated.run(() => {\n\t\t\tshowAlert('Successfully updated test activation status');\n\t\t\tcloseModal('Activate_Tests_Modal');\n\t\t\tresetWidget('test_activated_bulk');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_activated_bulk': test_activated_b, 'test_ids': this.getIds()});\n\t},\n\tbulkDelete: () => {\n\t\tBulk_Delete_Tests.run(() => {\n\t\t\tshowAlert('Successfully deleted tests');\n\t\t\tcloseModal('Delete_Tests_Modal');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_ids': this.getIds()});\n\t},\n\t// Flag to say if a test_type uses test_parameters in configured_tests\n\ttestUsesParameters: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Parameters.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\t// Flag to say if a test_type uses columns in configured_tests\n\ttestUsesColumn: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Column.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\tparamIsVisible: (test_type_in, param_in) => {\n\t\tconst params = Test_Parameters.data.map(item => { return item.test_type == test_type_in ? item.parameter : undefined;});\n\t\treturn params.includes(param_in);\n\t},\n\tgetEntityColumns: (project_id_in, entity_id_in, entity_name_in, data_type_in) => { \n\t\t//project_id_in = 'Brac';\n\t\t//entity_name_in = 'ancview_pregnancy';\n\t\t// JSON forms don't allow us to access selected label, unlike regular forms, so we need tor strip out artifacts\n\t\t// TODO Refactor test_parameters to lose dbt artifacts like ref('')\n\t\tentity_name_in = entity_name_in == undefined ? undefined : entity_name_in.replace(\"ref('dot_model__\",\"\").replace(\"')\",\"\");\n\t\t// Filter and subset\n\t\tvar columns = Entity_column_names_cache.data.filter(function (el) {\n \t\treturn (el.entity_id == entity_id_in || entity_id_in == undefined) &&\n\t\t\t\t (el.entity_name == entity_name_in || entity_name_in == undefined) &&\n\t\t\t\t (el.project_id == project_id_in || project_id_in == undefined) &&\n\t\t\t\t (el.data_type == data_type_in || data_type_in == undefined);\n\t\t}).map( ({label, value}) => ({label, value} ) );\n\t\treturn columns;\n\t},\n\tgetTestParameterDescription: (test_parameter_in) => { \n\t\t//test_parameter_in = 'values';\n\t\t// Filter \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? ' ' : params[0].description;\n\t\treturn tooltip;\n\t},\n\tgetTestParameterExample: (test_parameter_in) => { \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar example = params.length == 0 ? ' ' : params[0].example;\n\t\treturn example;\n\t},\n\tgetTestTypeDescription: (test_type_in) => { \n\t\t// Filter \n\t\tvar params = Test_Types_Cache.data.filter(function (el) {\n \t\treturn el.test_type == test_type_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? ' ' : params[0].description;\n\t\treturn tooltip;\n\t}\n}","variables":[],"userPermissions":[]},"id":"Tests_JSFunctions","deleted":false,"gitSyncId":"62bcfc1bb293c75c97818326_62bcfc1cb293c75c9781838d"}],"updatedResources":{"actionList":["JSFunctions.bulkUpdate##ENTITY_SEPARATOR##Tests","EditQuery##ENTITY_SEPARATOR##Entities","SelectQuery##ENTITY_SEPARATOR##Run log","Entities_dropdown_with_prefix##ENTITY_SEPARATOR##Tests","EditQuery##ENTITY_SEPARATOR##Projects","Test_parameters_sample##ENTITY_SEPARATOR##Tests","Test_Types_That_Use_Parameters##ENTITY_SEPARATOR##Tests","JSFunctions.allowUpdate##ENTITY_SEPARATOR##Tests","JSFunctions.getTestParameterExample##ENTITY_SEPARATOR##Tests","Bulk_Update_Test_Activated##ENTITY_SEPARATOR##Tests","InsertQuery##ENTITY_SEPARATOR##Categories","Delete_Test##ENTITY_SEPARATOR##Tests","Bulk_Delete_Tests##ENTITY_SEPARATOR##Tests","Entity_Categories_Dropdown##ENTITY_SEPARATOR##Entities","Test_Types_Cache##ENTITY_SEPARATOR##Tests","SelectQuery##ENTITY_SEPARATOR##Failed tests","DeleteQuery##ENTITY_SEPARATOR##Entities","Test_Parameters_Cache##ENTITY_SEPARATOR##Tests","DeleteQuery##ENTITY_SEPARATOR##Projects","Entities_dropdown_dbt_ref_fmt##ENTITY_SEPARATOR##Tests","Test_Parameters##ENTITY_SEPARATOR##Tests","JSFunctions.paramIsVisible##ENTITY_SEPARATOR##Tests","DB_Schemas_dropdown##ENTITY_SEPARATOR##Projects","JSFunctions.bulkDelete##ENTITY_SEPARATOR##Tests","Entities_dropdown##ENTITY_SEPARATOR##Tests","JSFunctions.getIds##ENTITY_SEPARATOR##Tests","Projects_Dropdown##ENTITY_SEPARATOR##Entities","Entity_column_names_cache##ENTITY_SEPARATOR##Tests","JSFunctions.testUsesParameters##ENTITY_SEPARATOR##Tests","Failed_Test_data_record##ENTITY_SEPARATOR##Failed tests","JSFunctions.getTestTypeDescription##ENTITY_SEPARATOR##Tests","SelectQuery##ENTITY_SEPARATOR##Run results","Test_Types_That_Use_Column##ENTITY_SEPARATOR##Tests","Testtypes_dropdown##ENTITY_SEPARATOR##Tests","JSFunctions.testUsesColumn##ENTITY_SEPARATOR##Tests","Run_Fails_by_Test_Type##ENTITY_SEPARATOR##Run results","InsertQuery##ENTITY_SEPARATOR##Entities","EditQuery##ENTITY_SEPARATOR##Categories","SelectQuery##ENTITY_SEPARATOR##Entities","Scenario_dropdown##ENTITY_SEPARATOR##Tests","Run_Fails_By_Scenario_plot##ENTITY_SEPARATOR##Run results","Projects_dropdown##ENTITY_SEPARATOR##Tests","Run_fails_by_category_plot##ENTITY_SEPARATOR##Run results","InsertQuery##ENTITY_SEPARATOR##Projects","Configured_tests_data##ENTITY_SEPARATOR##Tests","Add_Test##ENTITY_SEPARATOR##Tests","JSFunctions.getTestParameterDescription##ENTITY_SEPARATOR##Tests","Edit_Test##ENTITY_SEPARATOR##Tests","DeleteQuery##ENTITY_SEPARATOR##Categories","JSFunctions.getEntityColumns##ENTITY_SEPARATOR##Tests","SelectQuery##ENTITY_SEPARATOR##Projects","SelectQuery##ENTITY_SEPARATOR##Categories"],"pageList":["Failed tests","Categories","Projects","Run results","Run log","Tests","Entities"],"actionCollectionList":["JSFunctions##ENTITY_SEPARATOR##Tests"]},"editModeTheme":{"name":"Classic","displayName":"Classic","isSystemTheme":true,"deleted":false},"publishedTheme":{"name":"Classic","displayName":"Classic","isSystemTheme":true,"deleted":false}} \ No newline at end of file From 1289ba1f51e7a579670de672f8ef63be46121bb9 Mon Sep 17 00:00:00 2001 From: Matthew Harris Date: Sun, 4 Dec 2022 23:51:08 -0500 Subject: [PATCH 08/22] Removing hard-coded uuid on accepted_values. --- dot/utils/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dot/utils/utils.py b/dot/utils/utils.py index ed6c092..0a784bf 100644 --- a/dot/utils/utils.py +++ b/dot/utils/utils.py @@ -575,7 +575,7 @@ def get_test_rows( entity_df[column_name].isin( test_results_df.value_field.unique() ), - "uuid", + unique_column_name, ].tolist() break # Rest are basic id fields From 8794889e300d195fde6dc43064b977cff91ae47d Mon Sep 17 00:00:00 2001 From: Matthew Harris Date: Mon, 5 Dec 2022 08:53:52 -0500 Subject: [PATCH 09/22] Handle cases when there are no test results --- dot/utils/run_management.py | 46 ++++++++++++++++++++++--------------- 1 file changed, 28 insertions(+), 18 deletions(-) diff --git a/dot/utils/run_management.py b/dot/utils/run_management.py index c9fa2de..273647a 100644 --- a/dot/utils/run_management.py +++ b/dot/utils/run_management.py @@ -109,24 +109,34 @@ def run_dot_stages(project_id, logger, run_id): all_tests_summary = pd.concat([dbt_test_summary, ge_test_summary]) all_tests_rows = pd.concat([dbt_test_rows, ge_test_rows]) - # ===== Populate summary stats for rows total, passed, failed ===== - all_tests_summary = set_summary_stats(all_tests_summary, project_id, logger) - - # ========================= Save results ========================= - # To flat file, useful for debugging - all_tests_summary.to_excel(f"./generated_files/{project_id}/all_tests_summary.xlsx") - all_tests_rows.to_excel(f"./generated_files/{project_id}/all_tests_rows.xlsx") - - # To DB - save_tests_to_db(all_tests_rows, all_tests_summary, project_id, logger) - - logger.info( - "Ping!!! ... DOT run " - + str(run_id) - + " complete for project " - + str(project_id) - + ". 😊" - ) + if all_tests_summary.shape[0] > 0: + + # ===== Populate summary stats for rows total, passed, failed ===== + all_tests_summary = set_summary_stats(all_tests_summary, project_id, logger) + + # ========================= Save results ========================= + # To flat file, useful for debugging + all_tests_summary.to_excel(f"./generated_files/{project_id}/all_tests_summary.xlsx") + all_tests_rows.to_excel(f"./generated_files/{project_id}/all_tests_rows.xlsx") + + # To DB + save_tests_to_db(all_tests_rows, all_tests_summary, project_id, logger) + + logger.info( + "Ping!!! ... DOT run " + + str(run_id) + + " complete for project " + + str(project_id) + + ". 😊" + ) + else: + logger.info( + "Ooops!!! ... DOT run " + + str(run_id) + + " or project " + + str(project_id) + + " has no test results." + ) def run_dot_tests(project_id, logger, run_id): From 4bd1a252e4cda7d3989f496028f3e8f9c3503645 Mon Sep 17 00:00:00 2001 From: janpeter Date: Fri, 16 Dec 2022 18:00:56 -0500 Subject: [PATCH 10/22] Commit only the file without conflicts --- dot/utils/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dot/utils/utils.py b/dot/utils/utils.py index ed6c092..fd55c14 100644 --- a/dot/utils/utils.py +++ b/dot/utils/utils.py @@ -906,7 +906,7 @@ def get_entity_name_from_id(project_id: str, entity_id: str) -> str: FROM {schema_dot}.configured_entities WHERE - entity_id = '{entity_id}' + entity_id::text = '{entity_id}' """ return f"{dot_model_PREFIX}{_get_entity(conn_dot, query)}" From cc832b59bd8b79ce12b948333b3defc3136a6d47 Mon Sep 17 00:00:00 2001 From: janer Date: Wed, 21 Dec 2022 14:53:39 -0500 Subject: [PATCH 11/22] DKW-716 - Remove unneeded packages from DOT requirements (pyreqs and manually) --- dot/requirements_dot.txt | 118 +++------------------------------------ 1 file changed, 8 insertions(+), 110 deletions(-) diff --git a/dot/requirements_dot.txt b/dot/requirements_dot.txt index e45e5be..db1f8d2 100644 --- a/dot/requirements_dot.txt +++ b/dot/requirements_dot.txt @@ -1,146 +1,44 @@ -agate==1.6.1 - -appnope==0.1.2 -argon2-cffi==21.1.0 -asn1crypto==1.4.0 -attrs==21.2.0 -azure-common==1.1.27 -azure-core==1.21.0 -azure-storage-blob==12.9.0 -Babel==2.9.1 -backcall==0.2.0 -backports.zoneinfo==0.2.1 black==21.12b0 -bleach==4.1.0 -boto3==1.20.20 -cachetools==4.2.4 -certifi==2022.12.7 -cffi==1.15.0 -chardet==3.0.4 -click==8.0.3 -colorama==0.4.4 -cryptography==3.4.8 -cycler==0.11.0 dbt-core==1.0.0 dbt-extractor==0.4.0 dbt-postgres==1.0.0 -debugpy==1.5.1 decorator==5.1.0 -defusedxml==0.7.1 -entrypoints==0.3 -fonttools==4.28.3 +Faker==15.1.1 +faker_airtravel==0.4 +flatten_json==0.1.13 gdown==4.5.3 great-expectations==0.12.10 -grpcio==1.42.0 -hologram==0.0.14 -idna==2.10 -importlib-metadata==4.8.2 -importlib-resources==5.4.0 -ipykernel==6.6.0 ipython==7.31.1 ipython-genutils==0.2.0 -ipywidgets==7.6.5 -isodate==0.6.0 -jedi==0.18.1 jinja2==2.11.3 -jmespath==0.10.0 json-rpc==1.13.0 -jsonpatch==1.32 -jsonpointer==2.2 -jsonschema==3.1.1 jupyter-client==7.1.0 jupyter-core==4.9.1 jupyterlab-pygments==0.1.2 jupyterlab-widgets==1.0.2 -keyring==21.8.0 -kiwisolver==1.3.2 -leather==0.3.4 -Logbook==1.5.3 MarkupSafe==2.0.1 -mashumaro==2.9 -matplotlib==3.5.0 -matplotlib-inline==0.1.3 minimal-snowplow-tracker==0.0.2 -mistune==0.8.4 -msgpack==1.0.3 -msrest==0.6.21 -mypy-extensions==0.4.3 -nbclient==0.5.9 +mock==4.0.3 nbformat==5.1.3 nest-asyncio==1.5.4 -networkx==2.6.3 notebook==6.4.12 numpy==1.20.3 -oauthlib==3.2.1 -openpyxl==3.0.9 -oscrypto==1.2.1 -packaging==20.9 pandas==1.3.4 -pandocfilters==1.5.0 -parsedatetime==2.6 -parso==0.8.3 -pathspec==0.9.0 -pexpect==4.8.0 -pickleshare==0.7.5 -Pillow==9.3.0 -platformdirs==2.4.0 -prometheus-client==0.12.0 -prompt-toolkit==3.0.23 proto-plus==1.19.8 -protobuf==3.19.5 psycopg2-binary==2.9.2 -ptyprocess==0.7.0 -pyasn1==0.4.8 -pyasn1-modules==0.2.8 -pybase64==1.2.3 -pycparser==2.21 -pycryptodomex==3.12.0 Pygments==2.10.0 -PyJWT==2.4.0 -pyOpenSSL==20.0.1 -pyparsing==2.4.7 -pyrsistent==0.18.0 -python-dateutil==2.8.2 -python-on-whales==0.53.0 +pylint==2.14.1 +pytest==7.2.0 +pytest-timeout==2.1.0 +python_on_whales==0.53.0 python-slugify==5.0.2 -pytimeparse==1.1.8 -pytz==2021.3 -pytz-deprecation-shim==0.1.0.post0 PyYAML==6.0 -pyzmq==22.3.0 requests==2.23.0 requests-oauthlib==1.3.0 rsa==4.8 ruamel.yaml==0.17.17 ruamel.yaml.clib==0.2.6 -s3transfer==0.5.0 -scipy==1.7.3 -seaborn==0.11.2 -Send2Trash==1.8.0 setuptools-scm==6.3.2 -six==1.16.0 SQLAlchemy==1.3.24 -sqlparse==0.4.2 -termcolor==1.1.0 -terminado==0.12.1 -testpath==0.5.0 -text-unidecode==1.3 -tomli==1.2.2 toolz==0.11.2 -tornado==6.1 -traitlets==5.1.1 typing-extensions==3.10.0.2 -tzdata==2021.5 -tzlocal==4.1 -wcwidth==0.2.5 -webencodings==0.5.1 -Werkzeug==2.0.2 -widgetsnbextension==3.5.2 -zipp==3.6.0 -pytest==7.1.2 -mock==4.0.3 -pylint==2.14.1 -pytest-timeout==2.1.0 -faker==15.1.1 -faker-airtravel==0.4 -flatten_json==0.1.13 From fb350ea4f12b283bc7079d0fd031ab77efc82df0 Mon Sep 17 00:00:00 2001 From: janer Date: Wed, 21 Dec 2022 15:31:32 -0500 Subject: [PATCH 12/22] DKW-716 Remove unneeded packages from DOT requirements: Had to add one more package so the DOT demo run wouldn't fail. Overall reduction: 101 packages. --- dot/requirements_dot.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/dot/requirements_dot.txt b/dot/requirements_dot.txt index db1f8d2..7bb7dbf 100644 --- a/dot/requirements_dot.txt +++ b/dot/requirements_dot.txt @@ -23,6 +23,7 @@ nbformat==5.1.3 nest-asyncio==1.5.4 notebook==6.4.12 numpy==1.20.3 +openpyxl==3.0.9 pandas==1.3.4 proto-plus==1.19.8 psycopg2-binary==2.9.2 From d4ba5486943b1c0f9ec53658a078832ea45e1f09 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 6 Feb 2023 22:17:25 +0000 Subject: [PATCH 13/22] Bump oauthlib from 3.2.1 to 3.2.2 in /dot Bumps [oauthlib](https://github.com/oauthlib/oauthlib) from 3.2.1 to 3.2.2. - [Release notes](https://github.com/oauthlib/oauthlib/releases) - [Changelog](https://github.com/oauthlib/oauthlib/blob/master/CHANGELOG.rst) - [Commits](https://github.com/oauthlib/oauthlib/compare/v3.2.1...v3.2.2) --- updated-dependencies: - dependency-name: oauthlib dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- dot/requirements_dot.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dot/requirements_dot.txt b/dot/requirements_dot.txt index e45e5be..1d69ca6 100644 --- a/dot/requirements_dot.txt +++ b/dot/requirements_dot.txt @@ -71,7 +71,7 @@ nest-asyncio==1.5.4 networkx==2.6.3 notebook==6.4.12 numpy==1.20.3 -oauthlib==3.2.1 +oauthlib==3.2.2 openpyxl==3.0.9 oscrypto==1.2.1 packaging==20.9 From 4f2e43709edacfe0a9d9f976a2067639c69cd3b5 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 11 Feb 2023 00:36:52 +0000 Subject: [PATCH 14/22] Bump ipython from 7.31.1 to 8.10.0 in /dot Bumps [ipython](https://github.com/ipython/ipython) from 7.31.1 to 8.10.0. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/7.31.1...8.10.0) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- dot/requirements_dot.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dot/requirements_dot.txt b/dot/requirements_dot.txt index e45e5be..f9817fc 100644 --- a/dot/requirements_dot.txt +++ b/dot/requirements_dot.txt @@ -37,7 +37,7 @@ idna==2.10 importlib-metadata==4.8.2 importlib-resources==5.4.0 ipykernel==6.6.0 -ipython==7.31.1 +ipython==8.10.0 ipython-genutils==0.2.0 ipywidgets==7.6.5 isodate==0.6.0 From 278033fae33ffc2a824809ffeb8d5a223491d76c Mon Sep 17 00:00:00 2001 From: janer Date: Wed, 15 Mar 2023 14:36:50 -0400 Subject: [PATCH 15/22] Making sure that the changes of commit 162f9ef, that were merged into main with or #72, are reflected in this development branch! Comment in initial commit: "Expression is true does not need a column" --- dot/dbt/macros/test_expression_is_true.sql | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dot/dbt/macros/test_expression_is_true.sql b/dot/dbt/macros/test_expression_is_true.sql index 32edf35..d2aa6e6 100644 --- a/dot/dbt/macros/test_expression_is_true.sql +++ b/dot/dbt/macros/test_expression_is_true.sql @@ -1,4 +1,4 @@ -- wrapper around dbt_utils.expression_is_true including the name {% test expression_is_true(model, expression, column_name=None, condition='1=1', name='do_set_name') %} - {{ return(adapter.dispatch('test_expression_is_true', 'dbt_utils')(model, expression, column_name, condition)) }} + {{ return(adapter.dispatch('test_expression_is_true', 'dbt_utils')(model, expression, '', condition)) }} {% endtest %} From 63f3239888b6027756fa81219ebde63582ef971a Mon Sep 17 00:00:00 2001 From: janer Date: Thu, 16 Mar 2023 11:56:49 -0400 Subject: [PATCH 16/22] Minor changes so that self tests don't fail and don't produce deprecation warnings. --- db/dot/4-upload_sample_dot_data.sql | 4 ++-- dot/utils/connection_utils.py | 4 +++- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/db/dot/4-upload_sample_dot_data.sql b/db/dot/4-upload_sample_dot_data.sql index b46a9d4..97b8f8c 100644 --- a/db/dot/4-upload_sample_dot_data.sql +++ b/db/dot/4-upload_sample_dot_data.sql @@ -65,7 +65,7 @@ $${"table_specific_reported_date": "departure_time", "table_specific_patient_uui "uuid", "table_specific_period": "day"}$$, '2021-12-23 19:00:00.000 -0500', '2022-03-21 19:00:00.000 -0500', 'Matt'); INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', 'c4a3da8f-32f4-4e9b-b135-354de203ca90', 'TREAT-1', -5, 'Number of stops has a reasonible value', '', '', 'all_flight_data', 'custom_sql', '', '', +5, 'Number of stops has a reasonable value', '', '', 'all_flight_data', 'custom_sql', '', '', format('{%s: %s}', to_json('query'::text), to_json($query$ @@ -80,7 +80,7 @@ format('{%s: %s}', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'Lorenzo'); INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '3081f033-e8f4-4f3b-aea8-36f8c5df05dc', 'INCONSISTENT-1', -8, 'Price is a positive number for direct flights', '', '', 'ca4513fa-96e0-3a95-a1a8-7f0c127ea82a', 'expression_is_true', +8, 'Price is a positive number for direct flights', '', '', 'all_flight_data', 'expression_is_true', '', '', $${"name": "t_direct_flights_positive_price", "expression": "price is not null and price > 0", "condition": "stops = 'non-stop'"}$$, '2022-12-10 19:00:00.000 -0500', '2022-12-10 19:00:00.000 -0500', 'Lorenzo'); diff --git a/dot/utils/connection_utils.py b/dot/utils/connection_utils.py index de657c6..e145a6e 100644 --- a/dot/utils/connection_utils.py +++ b/dot/utils/connection_utils.py @@ -35,7 +35,9 @@ def refresh_db_metadata( @return: updated database metadata """ global metadata - metadata = MetaData(engine, reflect=True, schema=schema) + metadata = MetaData(engine, schema=schema) + metadata.reflect() + return metadata def create_sqlalchemy_engine(db_credentials: dict) -> sa.engine.base.Engine: From 81bd45d80e544f4255938f5e5bbec78f4d366bb8 Mon Sep 17 00:00:00 2001 From: janer Date: Thu, 16 Mar 2023 15:06:46 -0400 Subject: [PATCH 17/22] Changed test_results_summary.csv to match the actual output of a DOT run with ScanProject1 --- .../integration/test_results_summary.csv | 243 ++++++++++++++++-- 1 file changed, 225 insertions(+), 18 deletions(-) diff --git a/dot/self_tests/data/expected/integration/test_results_summary.csv b/dot/self_tests/data/expected/integration/test_results_summary.csv index c28ac2f..0bf3628 100644 --- a/dot/self_tests/data/expected/integration/test_results_summary.csv +++ b/dot/self_tests/data/expected/integration/test_results_summary.csv @@ -1,15 +1,15 @@ -,run_id,test_id,entity_id,test_type,column_name,test_parameters,test_status,test_status_message,failed_tests_view,failed_tests_view_sql,rows_total,rows_failed,rows_passed -0,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( +"run_id","test_id","entity_id","test_type","column_name","test_parameters","test_status","test_status_message","failed_tests_view","failed_tests_view_sql","rows_total","rows_failed","rows_passed" +"6b8ea104-f51e-4e84-ad6f-2a1bfd805721",cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( SELECT dot_model__all_flight_data.stops AS value_field, count(*) AS n_records - FROM self_tests_public_tests.dot_model__all_flight_data + FROM public_tests.dot_model__all_flight_data GROUP BY dot_model__all_flight_data.stops ) SELECT all_values.value_field, all_values.n_records FROM all_values WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 -1,fce38b78-5b90-4662-9c14-d93c88fe5323,a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," +"6b8ea104-f51e-4e84-ad6f-2a1bfd805721",a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," select distinct uuid, 'dot_model__all_flight_data' as primary_table, @@ -19,13 +19,13 @@ ",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_id7," SELECT DISTINCT dot_model__all_flight_data.uuid, 'dot_model__all_flight_data'::text AS primary_table, 'uuid'::text AS primary_table_id_field - FROM self_tests_public_tests.dot_model__all_flight_data + FROM public_tests.dot_model__all_flight_data WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 -2,fce38b78-5b90-4662-9c14-d93c88fe5323,ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list - FROM self_tests_public_tests.dot_model__all_flight_data +"6b8ea104-f51e-4e84-ad6f-2a1bfd805721",ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list + FROM public_tests.dot_model__all_flight_data WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text HAVING count(*) > 0;",1001,1,1000 -3,fce38b78-5b90-4662-9c14-d93c88fe5323,df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, +"6b8ea104-f51e-4e84-ad6f-2a1bfd805721",df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, dot_model__all_flight_data.departure_time, dot_model__all_flight_data.airline, dot_model__all_flight_data.origin_airport, @@ -34,13 +34,13 @@ dot_model__all_flight_data.destination_iata, dot_model__all_flight_data.stops, dot_model__all_flight_data.price - FROM self_tests_public_tests.dot_model__all_flight_data + FROM public_tests.dot_model__all_flight_data WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 -4,fce38b78-5b90-4662-9c14-d93c88fe5323,59b7fabd-acb8-3a38-8cbf-91736a214cab,all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( +"6b8ea104-f51e-4e84-ad6f-2a1bfd805721","59b7fabd-acb8-3a38-8cbf-91736a214cab",all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, dot_model__all_flight_data.airline AS patient_uuid_to_flag, count(dot_model__all_flight_data.uuid) AS number_of_records - FROM self_tests_public_tests.dot_model__all_flight_data + FROM public_tests.dot_model__all_flight_data GROUP BY (date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone)), dot_model__all_flight_data.airline ), possible_duplicate_combinations AS ( SELECT records_per_patient_period.date_period, @@ -51,20 +51,227 @@ ) SELECT array_agg(m.uuid) AS uuid_list FROM possible_duplicate_combinations pdc - LEFT JOIN self_tests_public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text + LEFT JOIN public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text HAVING count(*) > 0;",1001,274,727 -5,fce38b78-5b90-4662-9c14-d93c88fe5323,2ba7f3e8-cd62-37ac-854f-01f704489130,all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list +"6b8ea104-f51e-4e84-ad6f-2a1bfd805721","2ba7f3e8-cd62-37ac-854f-01f704489130",all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, dot_model__all_flight_data.origin_airport AS from_column_id - FROM self_tests_public_tests.dot_model__all_flight_data) from_model + FROM public_tests.dot_model__all_flight_data) from_model LEFT JOIN ( SELECT dot_model__all_airports_data.airport AS to_id - FROM self_tests_public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text + FROM public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL HAVING count(*) > 0;",1001,5,996 -6,fce38b78-5b90-4662-9c14-d93c88fe5323,942f4496-1202-3768-9cfe-96128bcd754c,all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, +"6b8ea104-f51e-4e84-ad6f-2a1bfd805721","942f4496-1202-3768-9cfe-96128bcd754c",all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, count(*) AS n_records - FROM self_tests_public_tests.dot_model__all_airports_data + FROM public_tests.dot_model__all_airports_data WHERE dot_model__all_airports_data.airport IS NOT NULL GROUP BY dot_model__all_airports_data.airport HAVING count(*) > 1;",365,2,363 -7,fce38b78-5b90-4662-9c14-d93c88fe5323,8abccc35-874f-3e54-98eb-6eed5c00cf72,all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 +"6b8ea104-f51e-4e84-ad6f-2a1bfd805721","8abccc35-874f-3e54-98eb-6eed5c00cf72",all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 +"4d590169-db1a-47d9-b416-cebafef3b676",cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( + SELECT dot_model__all_flight_data.stops AS value_field, + count(*) AS n_records + FROM public_tests.dot_model__all_flight_data + GROUP BY dot_model__all_flight_data.stops + ) + SELECT all_values.value_field, + all_values.n_records + FROM all_values + WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 +"4d590169-db1a-47d9-b416-cebafef3b676",a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," + select + distinct uuid, + 'dot_model__all_flight_data' as primary_table, + 'uuid' as primary_table_id_field + from {{ ref('dot_model__all_flight_data') }} + where CAST(REGEXP_REPLACE(COALESCE(stops,'0'), '[^0-9]+', '0', 'g') as INTEGER) > 5 + ",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_id7," SELECT DISTINCT dot_model__all_flight_data.uuid, + 'dot_model__all_flight_data'::text AS primary_table, + 'uuid'::text AS primary_table_id_field + FROM public_tests.dot_model__all_flight_data + WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 +"4d590169-db1a-47d9-b416-cebafef3b676",ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list + FROM public_tests.dot_model__all_flight_data + WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text + HAVING count(*) > 0;",1001,1,1000 +"4d590169-db1a-47d9-b416-cebafef3b676",df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, + dot_model__all_flight_data.departure_time, + dot_model__all_flight_data.airline, + dot_model__all_flight_data.origin_airport, + dot_model__all_flight_data.origin_iata, + dot_model__all_flight_data.destination_airport, + dot_model__all_flight_data.destination_iata, + dot_model__all_flight_data.stops, + dot_model__all_flight_data.price + FROM public_tests.dot_model__all_flight_data + WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 +"4d590169-db1a-47d9-b416-cebafef3b676","59b7fabd-acb8-3a38-8cbf-91736a214cab",all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( + SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, + dot_model__all_flight_data.airline AS patient_uuid_to_flag, + count(dot_model__all_flight_data.uuid) AS number_of_records + FROM public_tests.dot_model__all_flight_data + GROUP BY (date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone)), dot_model__all_flight_data.airline + ), possible_duplicate_combinations AS ( + SELECT records_per_patient_period.date_period, + records_per_patient_period.patient_uuid_to_flag, + records_per_patient_period.number_of_records + FROM records_per_patient_period + WHERE records_per_patient_period.number_of_records > 1 + ) + SELECT array_agg(m.uuid) AS uuid_list + FROM possible_duplicate_combinations pdc + LEFT JOIN public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text + HAVING count(*) > 0;",1001,274,727 +"4d590169-db1a-47d9-b416-cebafef3b676","2ba7f3e8-cd62-37ac-854f-01f704489130",all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list + FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, + dot_model__all_flight_data.origin_airport AS from_column_id + FROM public_tests.dot_model__all_flight_data) from_model + LEFT JOIN ( SELECT dot_model__all_airports_data.airport AS to_id + FROM public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text + WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL + HAVING count(*) > 0;",1001,5,996 +"4d590169-db1a-47d9-b416-cebafef3b676","942f4496-1202-3768-9cfe-96128bcd754c",all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, + count(*) AS n_records + FROM public_tests.dot_model__all_airports_data + WHERE dot_model__all_airports_data.airport IS NOT NULL + GROUP BY dot_model__all_airports_data.airport + HAVING count(*) > 1;",365,2,363 +"4d590169-db1a-47d9-b416-cebafef3b676","8abccc35-874f-3e54-98eb-6eed5c00cf72",all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 +a25cc041-d646-4f1d-b6cc-e7697af91fec,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( + SELECT dot_model__all_flight_data.stops AS value_field, + count(*) AS n_records + FROM public_tests.dot_model__all_flight_data + GROUP BY dot_model__all_flight_data.stops + ) + SELECT all_values.value_field, + all_values.n_records + FROM all_values + WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 +a25cc041-d646-4f1d-b6cc-e7697af91fec,a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," + select + distinct uuid, + 'dot_model__all_flight_data' as primary_table, + 'uuid' as primary_table_id_field + from {{ ref('dot_model__all_flight_data') }} + where CAST(REGEXP_REPLACE(COALESCE(stops,'0'), '[^0-9]+', '0', 'g') as INTEGER) > 5 + ",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_id7," SELECT DISTINCT dot_model__all_flight_data.uuid, + 'dot_model__all_flight_data'::text AS primary_table, + 'uuid'::text AS primary_table_id_field + FROM public_tests.dot_model__all_flight_data + WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 +a25cc041-d646-4f1d-b6cc-e7697af91fec,ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list + FROM public_tests.dot_model__all_flight_data + WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text + HAVING count(*) > 0;",1001,1,1000 +a25cc041-d646-4f1d-b6cc-e7697af91fec,df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, + dot_model__all_flight_data.departure_time, + dot_model__all_flight_data.airline, + dot_model__all_flight_data.origin_airport, + dot_model__all_flight_data.origin_iata, + dot_model__all_flight_data.destination_airport, + dot_model__all_flight_data.destination_iata, + dot_model__all_flight_data.stops, + dot_model__all_flight_data.price + FROM public_tests.dot_model__all_flight_data + WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 +"5b0d756b-7a84-4302-a001-c24b1e6b7de1","2ba7f3e8-cd62-37ac-854f-01f704489130",all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list + FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, + dot_model__all_flight_data.origin_airport AS from_column_id + FROM public_tests.dot_model__all_flight_data) from_model + LEFT JOIN ( SELECT dot_model__all_airports_data.airport AS to_id + FROM public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text + WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL + HAVING count(*) > 0;",1001,5,996 +"5b0d756b-7a84-4302-a001-c24b1e6b7de1","942f4496-1202-3768-9cfe-96128bcd754c",all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, + count(*) AS n_records + FROM public_tests.dot_model__all_airports_data + WHERE dot_model__all_airports_data.airport IS NOT NULL + GROUP BY dot_model__all_airports_data.airport + HAVING count(*) > 1;",365,2,363 +a25cc041-d646-4f1d-b6cc-e7697af91fec,"59b7fabd-acb8-3a38-8cbf-91736a214cab",all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( + SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, + dot_model__all_flight_data.airline AS patient_uuid_to_flag, + count(dot_model__all_flight_data.uuid) AS number_of_records + FROM public_tests.dot_model__all_flight_data + GROUP BY (date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone)), dot_model__all_flight_data.airline + ), possible_duplicate_combinations AS ( + SELECT records_per_patient_period.date_period, + records_per_patient_period.patient_uuid_to_flag, + records_per_patient_period.number_of_records + FROM records_per_patient_period + WHERE records_per_patient_period.number_of_records > 1 + ) + SELECT array_agg(m.uuid) AS uuid_list + FROM possible_duplicate_combinations pdc + LEFT JOIN public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text + HAVING count(*) > 0;",1001,274,727 +a25cc041-d646-4f1d-b6cc-e7697af91fec,"2ba7f3e8-cd62-37ac-854f-01f704489130",all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list + FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, + dot_model__all_flight_data.origin_airport AS from_column_id + FROM public_tests.dot_model__all_flight_data) from_model + LEFT JOIN ( SELECT dot_model__all_airports_data.airport AS to_id + FROM public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text + WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL + HAVING count(*) > 0;",1001,5,996 +a25cc041-d646-4f1d-b6cc-e7697af91fec,"942f4496-1202-3768-9cfe-96128bcd754c",all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, + count(*) AS n_records + FROM public_tests.dot_model__all_airports_data + WHERE dot_model__all_airports_data.airport IS NOT NULL + GROUP BY dot_model__all_airports_data.airport + HAVING count(*) > 1;",365,2,363 +a25cc041-d646-4f1d-b6cc-e7697af91fec,"8abccc35-874f-3e54-98eb-6eed5c00cf72",all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 +"5b0d756b-7a84-4302-a001-c24b1e6b7de1",cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( + SELECT dot_model__all_flight_data.stops AS value_field, + count(*) AS n_records + FROM public_tests.dot_model__all_flight_data + GROUP BY dot_model__all_flight_data.stops + ) + SELECT all_values.value_field, + all_values.n_records + FROM all_values + WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 +"5b0d756b-7a84-4302-a001-c24b1e6b7de1",a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," + select + distinct uuid, + 'dot_model__all_flight_data' as primary_table, + 'uuid' as primary_table_id_field + from {{ ref('dot_model__all_flight_data') }} + where CAST(REGEXP_REPLACE(COALESCE(stops,'0'), '[^0-9]+', '0', 'g') as INTEGER) > 5 + ",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_id7," SELECT DISTINCT dot_model__all_flight_data.uuid, + 'dot_model__all_flight_data'::text AS primary_table, + 'uuid'::text AS primary_table_id_field + FROM public_tests.dot_model__all_flight_data + WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 +"5b0d756b-7a84-4302-a001-c24b1e6b7de1",ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list + FROM public_tests.dot_model__all_flight_data + WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text + HAVING count(*) > 0;",1001,1,1000 +"5b0d756b-7a84-4302-a001-c24b1e6b7de1",df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, + dot_model__all_flight_data.departure_time, + dot_model__all_flight_data.airline, + dot_model__all_flight_data.origin_airport, + dot_model__all_flight_data.origin_iata, + dot_model__all_flight_data.destination_airport, + dot_model__all_flight_data.destination_iata, + dot_model__all_flight_data.stops, + dot_model__all_flight_data.price + FROM public_tests.dot_model__all_flight_data + WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 +"5b0d756b-7a84-4302-a001-c24b1e6b7de1","59b7fabd-acb8-3a38-8cbf-91736a214cab",all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( + SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, + dot_model__all_flight_data.airline AS patient_uuid_to_flag, + count(dot_model__all_flight_data.uuid) AS number_of_records + FROM public_tests.dot_model__all_flight_data + GROUP BY (date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone)), dot_model__all_flight_data.airline + ), possible_duplicate_combinations AS ( + SELECT records_per_patient_period.date_period, + records_per_patient_period.patient_uuid_to_flag, + records_per_patient_period.number_of_records + FROM records_per_patient_period + WHERE records_per_patient_period.number_of_records > 1 + ) + SELECT array_agg(m.uuid) AS uuid_list + FROM possible_duplicate_combinations pdc + LEFT JOIN public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text + HAVING count(*) > 0;",1001,274,727 +"5b0d756b-7a84-4302-a001-c24b1e6b7de1","8abccc35-874f-3e54-98eb-6eed5c00cf72",all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 From 15f399619b537f04e80ff34a44c8e0733d93b009 Mon Sep 17 00:00:00 2001 From: janer Date: Thu, 16 Mar 2023 20:27:00 -0400 Subject: [PATCH 18/22] Changed test_results_summary.csv and test_results.csv to match the actual output of a DOT run with ScanProject1 --- .../expected/integration/test_results.csv | 1152 +++++++++-------- .../integration/test_results_summary.csv | 265 +--- 2 files changed, 622 insertions(+), 795 deletions(-) diff --git a/dot/self_tests/data/expected/integration/test_results.csv b/dot/self_tests/data/expected/integration/test_results.csv index bd91bff..33aa634 100644 --- a/dot/self_tests/data/expected/integration/test_results.csv +++ b/dot/self_tests/data/expected/integration/test_results.csv @@ -1,572 +1,582 @@ ,test_result_id,run_id,test_id,entity_id,status,view_name,id_column_name,id_column_value -0,c3c714cd-9e3a-3883-8331-bbefac95c737,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,9074997b-f1f2-3efa-8354-64ecfbce502f -1,bbad97d3-868d-3354-bbe2-92471ae1175d,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,7ca78d29-3597-33cd-8abc-41ec0fd08e8d -2,90899fae-cab0-3ff8-9377-4eadcc7590b2,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,d5b16037-98fd-38cb-9631-6854148f1c96 -3,ba606c31-ba56-3df5-9764-1f103d4498c7,fce38b78-5b90-4662-9c14-d93c88fe5323,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,fail,tr_dot_model__all_flight_data_accepted_values_stops,uuid,5b60c5de-1408-39d5-8a8b-f7113b475a8f 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+577,688a0914-b05f-3632-bf57-f49af90c2e53,51479924-b5ff-4efc-9ba0-97cbd021b39f,2ba7f3e8-cd62-37ac-854f-01f704489130,all_flight_data,fail,tr_dot_model__all_flight_data_flight_with_no_a,uuid,5ef0d847-9158-371f-b98b-089933021bf7 +578,9b68bef2-201b-313f-8740-ff31ecccbaff,51479924-b5ff-4efc-9ba0-97cbd021b39f,942f4496-1202-3768-9cfe-96128bcd754c,all_airports_data,fail,tr_dot_model__all_airports_data_unique_airport,airport,Belize +579,cefe457d-e217-371b-90d4-ed73a318d7a0,51479924-b5ff-4efc-9ba0-97cbd021b39f,942f4496-1202-3768-9cfe-96128bcd754c,all_airports_data,fail,tr_dot_model__all_airports_data_unique_airport,airport,Harbin Yangjiagang airport +580,e3dbbd87-6dc2-30cb-8a05-8832d87dba82,51479924-b5ff-4efc-9ba0-97cbd021b39f,8abccc35-874f-3e54-98eb-6eed5c00cf72,all_flight_data,fail,chv_tr_different_dot_model__all_flight_data_price_distribution,airline,British Airways \ No newline at end of file diff --git a/dot/self_tests/data/expected/integration/test_results_summary.csv b/dot/self_tests/data/expected/integration/test_results_summary.csv index 0bf3628..4090ea4 100644 --- a/dot/self_tests/data/expected/integration/test_results_summary.csv +++ b/dot/self_tests/data/expected/integration/test_results_summary.csv @@ -1,15 +1,15 @@ -"run_id","test_id","entity_id","test_type","column_name","test_parameters","test_status","test_status_message","failed_tests_view","failed_tests_view_sql","rows_total","rows_failed","rows_passed" -"6b8ea104-f51e-4e84-ad6f-2a1bfd805721",cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( +,run_id,test_id,entity_id,test_type,column_name,test_parameters,test_status,test_status_message,failed_tests_view,failed_tests_view_sql,rows_total,rows_failed,rows_passed +0,51479924-b5ff-4efc-9ba0-97cbd021b39f,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( SELECT dot_model__all_flight_data.stops AS value_field, count(*) AS n_records - FROM public_tests.dot_model__all_flight_data + FROM self_tests_public_tests.dot_model__all_flight_data GROUP BY dot_model__all_flight_data.stops ) SELECT all_values.value_field, all_values.n_records FROM all_values WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 -"6b8ea104-f51e-4e84-ad6f-2a1bfd805721",a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," +1,51479924-b5ff-4efc-9ba0-97cbd021b39f,a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," select distinct uuid, 'dot_model__all_flight_data' as primary_table, @@ -19,82 +19,37 @@ ",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_id7," SELECT DISTINCT dot_model__all_flight_data.uuid, 'dot_model__all_flight_data'::text AS primary_table, 'uuid'::text AS primary_table_id_field - FROM public_tests.dot_model__all_flight_data + FROM self_tests_public_tests.dot_model__all_flight_data WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 -"6b8ea104-f51e-4e84-ad6f-2a1bfd805721",ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list - FROM public_tests.dot_model__all_flight_data - WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text - HAVING count(*) > 0;",1001,1,1000 -"6b8ea104-f51e-4e84-ad6f-2a1bfd805721",df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, - dot_model__all_flight_data.departure_time, - dot_model__all_flight_data.airline, - dot_model__all_flight_data.origin_airport, - dot_model__all_flight_data.origin_iata, - dot_model__all_flight_data.destination_airport, - dot_model__all_flight_data.destination_iata, - dot_model__all_flight_data.stops, - dot_model__all_flight_data.price - FROM public_tests.dot_model__all_flight_data - WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 -"6b8ea104-f51e-4e84-ad6f-2a1bfd805721","59b7fabd-acb8-3a38-8cbf-91736a214cab",all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( - SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, - dot_model__all_flight_data.airline AS patient_uuid_to_flag, - count(dot_model__all_flight_data.uuid) AS number_of_records - FROM public_tests.dot_model__all_flight_data - GROUP BY (date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone)), dot_model__all_flight_data.airline - ), possible_duplicate_combinations AS ( - SELECT records_per_patient_period.date_period, - records_per_patient_period.patient_uuid_to_flag, - records_per_patient_period.number_of_records - FROM records_per_patient_period - WHERE records_per_patient_period.number_of_records > 1 +2,51479924-b5ff-4efc-9ba0-97cbd021b39f,368b65ac-b5e4-37a9-902d-5f385f94a9a0,all_flight_data,expression_is_true,,"{'name': 't_direct_flights_positive_price', 'condition': ""stops = 'non-stop'"", 'expression': 'price is not null and price > 0'}",fail,"got 10 results, configured to fail if != 0",tr_dot_model__all_flight_data_t_direct_flights_p_p," WITH meet_condition AS ( + SELECT dot_model__all_flight_data.uuid, + dot_model__all_flight_data.departure_time, + dot_model__all_flight_data.airline, + dot_model__all_flight_data.origin_airport, + dot_model__all_flight_data.origin_iata, + dot_model__all_flight_data.destination_airport, + dot_model__all_flight_data.destination_iata, + dot_model__all_flight_data.stops, + dot_model__all_flight_data.price + FROM self_tests_public_tests.dot_model__all_flight_data + WHERE dot_model__all_flight_data.stops::text = 'non-stop'::text ) - SELECT array_agg(m.uuid) AS uuid_list - FROM possible_duplicate_combinations pdc - LEFT JOIN public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text - HAVING count(*) > 0;",1001,274,727 -"6b8ea104-f51e-4e84-ad6f-2a1bfd805721","2ba7f3e8-cd62-37ac-854f-01f704489130",all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list - FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, - dot_model__all_flight_data.origin_airport AS from_column_id - FROM public_tests.dot_model__all_flight_data) from_model - LEFT JOIN ( SELECT dot_model__all_airports_data.airport AS to_id - FROM public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text - WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL - HAVING count(*) > 0;",1001,5,996 -"6b8ea104-f51e-4e84-ad6f-2a1bfd805721","942f4496-1202-3768-9cfe-96128bcd754c",all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, - count(*) AS n_records - FROM public_tests.dot_model__all_airports_data - WHERE dot_model__all_airports_data.airport IS NOT NULL - GROUP BY dot_model__all_airports_data.airport - HAVING count(*) > 1;",365,2,363 -"6b8ea104-f51e-4e84-ad6f-2a1bfd805721","8abccc35-874f-3e54-98eb-6eed5c00cf72",all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 -"4d590169-db1a-47d9-b416-cebafef3b676",cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( - SELECT dot_model__all_flight_data.stops AS value_field, - count(*) AS n_records - FROM public_tests.dot_model__all_flight_data - GROUP BY dot_model__all_flight_data.stops - ) - SELECT all_values.value_field, - all_values.n_records - FROM all_values - WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 -"4d590169-db1a-47d9-b416-cebafef3b676",a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," - select - distinct uuid, - 'dot_model__all_flight_data' as primary_table, - 'uuid' as primary_table_id_field - from {{ ref('dot_model__all_flight_data') }} - where CAST(REGEXP_REPLACE(COALESCE(stops,'0'), '[^0-9]+', '0', 'g') as INTEGER) > 5 - ",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_id7," SELECT DISTINCT dot_model__all_flight_data.uuid, - 'dot_model__all_flight_data'::text AS primary_table, - 'uuid'::text AS primary_table_id_field - FROM public_tests.dot_model__all_flight_data - WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 -"4d590169-db1a-47d9-b416-cebafef3b676",ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list - FROM public_tests.dot_model__all_flight_data + SELECT meet_condition.uuid, + meet_condition.departure_time, + meet_condition.airline, + meet_condition.origin_airport, + meet_condition.origin_iata, + meet_condition.destination_airport, + meet_condition.destination_iata, + meet_condition.stops, + meet_condition.price + FROM meet_condition + WHERE NOT (meet_condition.price IS NOT NULL AND meet_condition.price > 0::double precision);",1001,10,991 +3,51479924-b5ff-4efc-9ba0-97cbd021b39f,ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list + FROM self_tests_public_tests.dot_model__all_flight_data WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text HAVING count(*) > 0;",1001,1,1000 -"4d590169-db1a-47d9-b416-cebafef3b676",df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, +4,51479924-b5ff-4efc-9ba0-97cbd021b39f,df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, dot_model__all_flight_data.departure_time, dot_model__all_flight_data.airline, dot_model__all_flight_data.origin_airport, @@ -103,13 +58,13 @@ dot_model__all_flight_data.destination_iata, dot_model__all_flight_data.stops, dot_model__all_flight_data.price - FROM public_tests.dot_model__all_flight_data + FROM self_tests_public_tests.dot_model__all_flight_data WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 -"4d590169-db1a-47d9-b416-cebafef3b676","59b7fabd-acb8-3a38-8cbf-91736a214cab",all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( +5,51479924-b5ff-4efc-9ba0-97cbd021b39f,59b7fabd-acb8-3a38-8cbf-91736a214cab,all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, dot_model__all_flight_data.airline AS patient_uuid_to_flag, count(dot_model__all_flight_data.uuid) AS number_of_records - FROM public_tests.dot_model__all_flight_data + FROM self_tests_public_tests.dot_model__all_flight_data GROUP BY (date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone)), dot_model__all_flight_data.airline ), possible_duplicate_combinations AS ( SELECT records_per_patient_period.date_period, @@ -120,158 +75,20 @@ ) SELECT array_agg(m.uuid) AS uuid_list FROM possible_duplicate_combinations pdc - LEFT JOIN public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text + LEFT JOIN self_tests_public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text HAVING count(*) > 0;",1001,274,727 -"4d590169-db1a-47d9-b416-cebafef3b676","2ba7f3e8-cd62-37ac-854f-01f704489130",all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list +6,51479924-b5ff-4efc-9ba0-97cbd021b39f,2ba7f3e8-cd62-37ac-854f-01f704489130,all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, dot_model__all_flight_data.origin_airport AS from_column_id - FROM public_tests.dot_model__all_flight_data) from_model + FROM self_tests_public_tests.dot_model__all_flight_data) from_model LEFT JOIN ( SELECT dot_model__all_airports_data.airport AS to_id - FROM public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text + FROM self_tests_public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL HAVING count(*) > 0;",1001,5,996 -"4d590169-db1a-47d9-b416-cebafef3b676","942f4496-1202-3768-9cfe-96128bcd754c",all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, +7,51479924-b5ff-4efc-9ba0-97cbd021b39f,942f4496-1202-3768-9cfe-96128bcd754c,all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, count(*) AS n_records - FROM public_tests.dot_model__all_airports_data + FROM self_tests_public_tests.dot_model__all_airports_data WHERE dot_model__all_airports_data.airport IS NOT NULL GROUP BY dot_model__all_airports_data.airport HAVING count(*) > 1;",365,2,363 -"4d590169-db1a-47d9-b416-cebafef3b676","8abccc35-874f-3e54-98eb-6eed5c00cf72",all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 -a25cc041-d646-4f1d-b6cc-e7697af91fec,cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( - SELECT dot_model__all_flight_data.stops AS value_field, - count(*) AS n_records - FROM public_tests.dot_model__all_flight_data - GROUP BY dot_model__all_flight_data.stops - ) - SELECT all_values.value_field, - all_values.n_records - FROM all_values - WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 -a25cc041-d646-4f1d-b6cc-e7697af91fec,a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," - select - distinct uuid, - 'dot_model__all_flight_data' as primary_table, - 'uuid' as primary_table_id_field - from {{ ref('dot_model__all_flight_data') }} - where CAST(REGEXP_REPLACE(COALESCE(stops,'0'), '[^0-9]+', '0', 'g') as INTEGER) > 5 - ",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_id7," SELECT DISTINCT dot_model__all_flight_data.uuid, - 'dot_model__all_flight_data'::text AS primary_table, - 'uuid'::text AS primary_table_id_field - FROM public_tests.dot_model__all_flight_data - WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 -a25cc041-d646-4f1d-b6cc-e7697af91fec,ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list - FROM public_tests.dot_model__all_flight_data - WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text - HAVING count(*) > 0;",1001,1,1000 -a25cc041-d646-4f1d-b6cc-e7697af91fec,df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, - dot_model__all_flight_data.departure_time, - dot_model__all_flight_data.airline, - dot_model__all_flight_data.origin_airport, - dot_model__all_flight_data.origin_iata, - dot_model__all_flight_data.destination_airport, - dot_model__all_flight_data.destination_iata, - dot_model__all_flight_data.stops, - dot_model__all_flight_data.price - FROM public_tests.dot_model__all_flight_data - WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 -"5b0d756b-7a84-4302-a001-c24b1e6b7de1","2ba7f3e8-cd62-37ac-854f-01f704489130",all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list - FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, - dot_model__all_flight_data.origin_airport AS from_column_id - FROM public_tests.dot_model__all_flight_data) from_model - LEFT JOIN ( SELECT dot_model__all_airports_data.airport AS to_id - FROM public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text - WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL - HAVING count(*) > 0;",1001,5,996 -"5b0d756b-7a84-4302-a001-c24b1e6b7de1","942f4496-1202-3768-9cfe-96128bcd754c",all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, - count(*) AS n_records - FROM public_tests.dot_model__all_airports_data - WHERE dot_model__all_airports_data.airport IS NOT NULL - GROUP BY dot_model__all_airports_data.airport - HAVING count(*) > 1;",365,2,363 -a25cc041-d646-4f1d-b6cc-e7697af91fec,"59b7fabd-acb8-3a38-8cbf-91736a214cab",all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( - SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, - dot_model__all_flight_data.airline AS patient_uuid_to_flag, - count(dot_model__all_flight_data.uuid) AS number_of_records - FROM public_tests.dot_model__all_flight_data - GROUP BY (date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone)), dot_model__all_flight_data.airline - ), possible_duplicate_combinations AS ( - SELECT records_per_patient_period.date_period, - records_per_patient_period.patient_uuid_to_flag, - records_per_patient_period.number_of_records - FROM records_per_patient_period - WHERE records_per_patient_period.number_of_records > 1 - ) - SELECT array_agg(m.uuid) AS uuid_list - FROM possible_duplicate_combinations pdc - LEFT JOIN public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text - HAVING count(*) > 0;",1001,274,727 -a25cc041-d646-4f1d-b6cc-e7697af91fec,"2ba7f3e8-cd62-37ac-854f-01f704489130",all_flight_data,relationships,origin_airport,"{'to': ""ref('dot_model__all_airports_data')"", 'name': 'flight_with_no_airport', 'field': 'airport'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_flight_with_no_a," SELECT array_agg(from_model.from_uuid) AS uuid_list - FROM ( SELECT dot_model__all_flight_data.uuid AS from_uuid, - dot_model__all_flight_data.origin_airport AS from_column_id - FROM public_tests.dot_model__all_flight_data) from_model - LEFT JOIN ( SELECT dot_model__all_airports_data.airport AS to_id - FROM public_tests.dot_model__all_airports_data) to_model ON to_model.to_id::text = from_model.from_column_id::text - WHERE from_model.from_column_id IS NOT NULL AND to_model.to_id IS NULL - HAVING count(*) > 0;",1001,5,996 -a25cc041-d646-4f1d-b6cc-e7697af91fec,"942f4496-1202-3768-9cfe-96128bcd754c",all_airports_data,unique,airport,{},fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_airports_data_unique_airport," SELECT dot_model__all_airports_data.airport AS unique_field, - count(*) AS n_records - FROM public_tests.dot_model__all_airports_data - WHERE dot_model__all_airports_data.airport IS NOT NULL - GROUP BY dot_model__all_airports_data.airport - HAVING count(*) > 1;",365,2,363 -a25cc041-d646-4f1d-b6cc-e7697af91fec,"8abccc35-874f-3e54-98eb-6eed5c00cf72",all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 -"5b0d756b-7a84-4302-a001-c24b1e6b7de1",cad13f73-27b5-3427-be8f-4d213bba3b19,all_flight_data,accepted_values,stops,"{'values': ['1', '2', '3', 'Non-stop']}",fail,"got 2 results, configured to fail if != 0",tr_dot_model__all_flight_data_accepted_values_stops," WITH all_values AS ( - SELECT dot_model__all_flight_data.stops AS value_field, - count(*) AS n_records - FROM public_tests.dot_model__all_flight_data - GROUP BY dot_model__all_flight_data.stops - ) - SELECT all_values.value_field, - all_values.n_records - FROM all_values - WHERE all_values.value_field::text <> ALL (ARRAY['1'::character varying, '2'::character varying, '3'::character varying, 'Non-stop'::character varying]::text[]);",1001,2,999 -"5b0d756b-7a84-4302-a001-c24b1e6b7de1",a87d911d-28cb-3453-a777-b62cec58c7ba,all_flight_data,custom_sql,," - select - distinct uuid, - 'dot_model__all_flight_data' as primary_table, - 'uuid' as primary_table_id_field - from {{ ref('dot_model__all_flight_data') }} - where CAST(REGEXP_REPLACE(COALESCE(stops,'0'), '[^0-9]+', '0', 'g') as INTEGER) > 5 - ",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_id7," SELECT DISTINCT dot_model__all_flight_data.uuid, - 'dot_model__all_flight_data'::text AS primary_table, - 'uuid'::text AS primary_table_id_field - FROM public_tests.dot_model__all_flight_data - WHERE regexp_replace(COALESCE(dot_model__all_flight_data.stops, '0'::character varying)::text, '[^0-9]+'::text, '0'::text, 'g'::text)::integer > 5;",1001,1,1000 -"5b0d756b-7a84-4302-a001-c24b1e6b7de1",ed27037a-4054-3070-9d88-fdf9cd0231c8,all_flight_data,not_negative_string_column,price,{'name': 'price'},fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_price," SELECT array_agg(dot_model__all_flight_data.uuid) AS uuid_list - FROM public_tests.dot_model__all_flight_data - WHERE dot_model__all_flight_data.price::character varying::text ~~ '-%'::text - HAVING count(*) > 0;",1001,1,1000 -"5b0d756b-7a84-4302-a001-c24b1e6b7de1",df44c2f4-65f8-3170-a03f-6035aaa45660,all_flight_data,not_null,origin_airport,{},fail,"got 53 results, configured to fail if != 0",tr_dot_model__all_flight_data_not_null_origin_a," SELECT dot_model__all_flight_data.uuid, - dot_model__all_flight_data.departure_time, - dot_model__all_flight_data.airline, - dot_model__all_flight_data.origin_airport, - dot_model__all_flight_data.origin_iata, - dot_model__all_flight_data.destination_airport, - dot_model__all_flight_data.destination_iata, - dot_model__all_flight_data.stops, - dot_model__all_flight_data.price - FROM public_tests.dot_model__all_flight_data - WHERE dot_model__all_flight_data.origin_airport IS NULL;",1001,53,948 -"5b0d756b-7a84-4302-a001-c24b1e6b7de1","59b7fabd-acb8-3a38-8cbf-91736a214cab",all_flight_data,possible_duplicate_forms,,"{'table_specific_uuid': 'uuid', 'table_specific_period': 'day', 'table_specific_patient_uuid': 'airline', 'table_specific_reported_date': 'departure_time'}",fail,"got 1 result, configured to fail if != 0",tr_dot_model__all_flight_data_possible_duplicate_f," WITH records_per_patient_period AS ( - SELECT date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone) AS date_period, - dot_model__all_flight_data.airline AS patient_uuid_to_flag, - count(dot_model__all_flight_data.uuid) AS number_of_records - FROM public_tests.dot_model__all_flight_data - GROUP BY (date_trunc('day'::text, dot_model__all_flight_data.departure_time::timestamp without time zone)), dot_model__all_flight_data.airline - ), possible_duplicate_combinations AS ( - SELECT records_per_patient_period.date_period, - records_per_patient_period.patient_uuid_to_flag, - records_per_patient_period.number_of_records - FROM records_per_patient_period - WHERE records_per_patient_period.number_of_records > 1 - ) - SELECT array_agg(m.uuid) AS uuid_list - FROM possible_duplicate_combinations pdc - LEFT JOIN public_tests.dot_model__all_flight_data m ON date_trunc('day'::text, m.departure_time::timestamp without time zone) = pdc.date_period AND m.airline::text = pdc.patient_uuid_to_flag::text - HAVING count(*) > 0;",1001,274,727 -"5b0d756b-7a84-4302-a001-c24b1e6b7de1","8abccc35-874f-3e54-98eb-6eed5c00cf72",all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 +8,51479924-b5ff-4efc-9ba0-97cbd021b39f,8abccc35-874f-3e54-98eb-6eed5c00cf72,all_flight_data,expect_similar_means_across_reporters,price,"{'key': 'airline', 'quantity': 'price', 'id_column': 'airline', 'data_table': 'dot_model__all_flight_data', 'target_table': 'dot_model__airlines_data'}",fail,,chv_tr_different_dot_model__all_flight_data_price_distribution,,1001,1,1000 \ No newline at end of file From bd3739c00ae1519f52eec58fe756ee8905fe1e2f Mon Sep 17 00:00:00 2001 From: janer Date: Tue, 21 Mar 2023 15:40:15 -0400 Subject: [PATCH 19/22] Adjusted Readme to reflect changes to entity_id in example queries and move advanced config to CONTRIBUTING.md to improve readability. --- CONTRIBUTING.md | 67 ++++++++++++++++++++++++++++++++ README.md | 100 ++++++++---------------------------------------- 2 files changed, 83 insertions(+), 84 deletions(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 0f00ae5..574492b 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -16,6 +16,73 @@ you can open a new issue using a relevant [issue form](https://github.com/dataki As a general rule, we don’t assign issues to anyone. If you find an issue to work on, you are welcome to open a PR with a fix. +### More complex configuration options + +All the configuration files must be located under the [config](dot/config) folder of the DOT. + +### Main config file + +The main config file must be called `dot_config.yml` and located at the top [config](dot/config) folder. Note that +this file will be ignored for version control. You may use the [example dot_config yaml](dot/config/example/dot_config.yml) +as a template. + +Besides the DOT DB connection in the paragraph above, see below for additional config options. + +#### Connection parameters for each of the projects to run + +For each of the projects you would like to run, add a key to the DOT config yaml with the following structure: +``` +_db: + type: connection type e.g. postgres + host: host + user: username + pass: password + port: port number e.g 5432 + dbname: database name + schema: schema name, e.g. public + threads: nubmer of threads for DBT, e.g. 4 +``` + +#### Output schema suffix + +The DOT generates 2 kind of database objects: +- Entities of the models that are being tested, e.g. assessments, follow ups, patients +- Results of the failing tests + +If nothing is done, these objects would be created in the same schema as the original data for the project +(thus polluting the DB). If the key `output_schema_suffix` is added, its value will be added as a suffix; i.e. if the +project data is stored in a certain schema, the output objects will go to `_` +(e.g. to `public_tests` if the project schema is `public` and the suffix is set to `tests` in the lines above). + +Note that this mechanism uses a DBT feature, and that the same applies to the GE tests. + +#### Save passed tests + +The key `save_passed_tests` accepts boolean values. If set to true, tha results of the passing tests will be also stored +to the DOT DB. If not, only the results of failing tests will be stored. + +### Other config file locations +Optional configuration for DBT and Great Expectations can be added, per project, in a structure as follows. + +```bash +|____config +| |____ +| | |____dbt +| | | |____profiles.yml +| | | |____dbt_project.yml +| | |____ge +| | | |____great_expectations.yml +| | | |____config_variables.yml +| | | |____batch_config.json +``` +In general these customizations will not be needed, but only in some scenarios with particular requirements; these +require a deeper knowledge of the DOT and of either DBT and/or Great Expectations. + +There are examples for all the files above under [this folder](dot/config/example/project_name). For each of the +files you want to customize, you may copy and adapt the examples provided following the directory structure above. + +More details in the [config README](dot/config/README.md). + ## Making Code changes ## Setting up a Development Environment diff --git a/README.md b/README.md index 394cab3..0ccad67 100644 --- a/README.md +++ b/README.md @@ -275,17 +275,16 @@ also use the DOT user interface for tests, for more details please see section s The DOT will run tests against user-defined views onto the underlying data. These views are called "entities" and defined in table `dot.configured_entities`: -| Column | Description | -| :----------- | :----------- | -| entity_id | UUID of the entity | -| entity_name | Name of the entity e.g. ancview_danger_sign | +| Column | Description | +| :----------- |:--------------------------------------------------------------------------| +| entity_id | Name of the entity e.g. ancview_danger_sign | | entity_category | Category of the entity e.g. anc => needs to be in `dot.entity_categories` | -| entity_definition | String for the SQL query that defines the entity | +| entity_definition | String for the SQL query that defines the entity | For example, this would be an insert command to create `ancview_danger_sign`: ```postgres-sql -INSERT INTO dot.configured_entities VALUES('b05f1f9c-2176-46b0-8e8f-d6690f696b9b', +INSERT INTO dot.configured_entities (project_id,entity_id,entity_category,entity_definition,date_added,date_modified,last_updated_by) VALUES('Project1', 'ancview_danger_sign', 'anc', '{{ config(materialized=''view'') }} {% set schema = %} @@ -294,8 +293,6 @@ from {{ schema }}.ancview_danger_sign'); ``` -Note: UUID in the above statement will be overwritten with an automatically generated value. - All entities use Jinja macro statements - the parts between `{ ... }` - which the DOT uses to create the entity materialized views in the correct database location. Use the above format for any new entities you create. @@ -368,7 +365,7 @@ generated one.

``` 'INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '0cdc9702-91e0-3499-b6f0-4dec12ad0f08', 'ASSESS-1', 3, '', '', - '', 'dot_model__ancview_pregnancy', 'relationships', 'uuid', '', + '', 'ancview_pregnancy', 'relationships', 'uuid', '', $${"name": "danger_signs_with_no_pregnancy", "to": "ref('dot_model__ancview_danger_sign')", "field": "pregnancy_uuid"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` @@ -376,27 +373,27 @@ generated one.

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '52d7352e-56ee-3084-9c67-e5ab24afc3a3', 'DUPLICATE-1', 3, '', - '', '', '6ba8075f-6f35-4ff1-be3a-4c75d0884bf4', 'unique', 'uuid', 'alternative index?', '', + '', '', 'ancview_pregnancy', 'unique', 'uuid', 'alternative index?', '', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` 3. `not_negative_string_column`

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '8aca2bee-9e95-3f8a-90e9-153714e05367', 'INCONSISTENT-1', 3, - '', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'not_negative_string_column', 'patient_age_in_years', '', + '', '', '', 'ancview_pregnancy', 'not_negative_string_column', 'patient_age_in_years', '', $${"name": "patient_age_in_years"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` 4. `not_null`

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '549c0575-e64c-3605-85a9-70356a23c4d2', 'MISSING-1', 3, '', - '', '', '638ed10b-3a2f-4f18-9ca1-ebf23563fdc0', 'not_null', 'patient_id', '', '', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); + '', '', 'ancview_pregnancy', 'not_null', 'patient_id', '', '', '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` 5. `accepted_values`

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '935e6b61-b664-3eab-9d67-97c2c9c2bec0', 'INCONSISTENT-1', 3, - '', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'accepted_values', 'fp_method_being_used', '', + '', '', '', 'ancview_pregnancy', 'accepted_values', 'fp_method_being_used', '', $${"values": ['oral mini-pill (progestogen)', 'male condom', 'female sterilization', 'iud', 'oral combination pill', 'implants', 'injectible']}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` @@ -404,14 +401,14 @@ generated one.

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '7f78de0e-8268-3da6-8845-9a445457cc9a', 'DUPLICATE-1', 3, '', - '', '', '66f5d13a-8f74-4f97-836b-334d97932781', 'possible_duplicate_forms', '', '', + '', '', 'ancview_pregnancy', 'possible_duplicate_forms', '', '', $${"table_specific_reported_date": "delivery_date", "table_specific_patient_uuid": "patient_id", "table_specific_uuid": "uuid"}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` 7. `associated_columns_not_null`

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', 'd74fc600-31c3-307d-9501-5b7f6b09aff5', 'MISSING-1', 3, '', - '', '', 'dot_model__iccmview_assessment', 'associated_columns_not_null', 'diarrhea_dx', 'diarrhea diagnosis', + '', '', 'ancview_pregnancy', 'associated_columns_not_null', 'diarrhea_dx', 'diarrhea diagnosis', $${"name": "diarrhea_dx_has_duration", "col_value": True, "associated_columns": ['max_symptom_duration']}$$, '2021-12-23 19:00:00.000 -0500', '2021-12-23 19:00:00.000 -0500', 'your-name'); ``` @@ -419,7 +416,7 @@ generated one.

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '0cdc9702-91e0-3499-b6f0-4dec12ad0f08', 'BIAS-1', 3, - 'Test for miscalibrated thermometer', '', '', 'baf349c9-c919-40ff-a611-61ddc59c2d52', 'expect_similar_means_across_reporters', + 'Test for miscalibrated thermometer', '', '', 'ancview_pregnancy', 'expect_similar_means_across_reporters', 'child_temperature_pre_chw', '', '{"key": "reported_by","quantity": "child_temperature_pre_chw", "form_name": "dot_model__iccmview_assessment","id_column": "reported_by"}', '2022-01-19 20:00:00.000 -0500', '2022-01-19 20:00:00.000 -0500', 'your-name'); @@ -428,7 +425,7 @@ generated one.

``` INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', '3081f033-e8f4-4f3b-aea8-36f8c5df05dc', 'INCONSISTENT-1', 3, - 'Wrong treatment/dosage arising from wrong age of children (WT-1)', '', '', 'baf349c9-c919-40ff-a611-61ddc59c2d52', + 'Wrong treatment/dosage arising from wrong age of children (WT-1)', '', '', 'ancview_pregnancy', 'expression_is_true', '', '', $${"name": "t_under_24_months_wrong_dosage", "expression": "malaria_act_dosage is not null", "condition": "(patient_age_in_months<24) and (malaria_give_act is not null)"}$$, '2022-02-14 19:00:00.000 -0500', '2022-02-14 19:00:00.000 -0500', 'your-name'); @@ -437,7 +434,7 @@ generated one.

Custom SQL queries require special case because they must have `primary_table` and `primary_table_id_field` specified within the SQL query as shown below: ``` - INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', 'c4a3da8f-32f4-4e9b-b135-354de203ca90', 'TREAT-1', 6, 'Test for new family planning method (NFP-1)', '', '', '95bd0f60-ab59-48fc-a62e-f256f5f3e6de', 'custom_sql', '', '', + INSERT INTO dot.configured_tests VALUES(TRUE, 'ScanProject1', 'c4a3da8f-32f4-4e9b-b135-354de203ca90', 'TREAT-1', 6, 'Test for new family planning method (NFP-1)', '', '', 'ancview_pregnancy', 'custom_sql', '', '', format('{%s: %s}', to_json('query'::text), to_json($query$ @@ -527,72 +524,7 @@ custom SQL query. Given this, there is a useful Postgres function which will ret see 'Seeing the raw data for failed tests' above. -## More complex configuration options - -All the configuration files must be located under the [config](dot/config) folder of the DOT. - -### Main config file - -The main config file must be called `dot_config.yml` and located at the top [config](dot/config) folder. Note that -this file will be ignored for version control. You may use the [example dot_config yaml](dot/config/example/dot_config.yml) -as a template. - -Besides the DOT DB connection in the paragraph above, see below for additional config options. - -#### Connection parameters for each of the projects to run - -For each of the projects you would like to run, add a key to the DOT config yaml with the following structure: -``` -_db: - type: connection type e.g. postgres - host: host - user: username - pass: password - port: port number e.g 5432 - dbname: database name - schema: schema name, e.g. public - threads: nubmer of threads for DBT, e.g. 4 -``` - -#### Output schema suffix - -The DOT generates 2 kind of database objects: -- Entities of the models that are being tested, e.g. assessments, follow ups, patients -- Results of the failing tests - -If nothing is done, these objects would be created in the same schema as the original data for the project -(thus polluting the DB). If the key `output_schema_suffix` is added, its value will be added as a suffix; i.e. if the -project data is stored in a certain schema, the output objects will go to `_` -(e.g. to `public_tests` if the project schema is `public` and the suffix is set to `tests` in the lines above). - -Note that this mechanism uses a DBT feature, and that the same applies to the GE tests. - -#### Save passed tests - -The key `save_passed_tests` accepts boolean values. If set to true, tha results of the passing tests will be also stored -to the DOT DB. If not, only the results of failing tests will be stored. - -### Other config file locations -Optional configuration for DBT and Great Expectations can be added, per project, in a structure as follows. - -```bash -|____config -| |____ -| | |____dbt -| | | |____profiles.yml -| | | |____dbt_project.yml -| | |____ge -| | | |____great_expectations.yml -| | | |____config_variables.yml -| | | |____batch_config.json -``` -In general these customizations will not be needed, but only in some scenarios with particular requirements; these -require a deeper knowledge of the DOT and of either DBT and/or Great Expectations. - -There are examples for all the files above under [this folder](dot/config/example/project_name). For each of the -files you want to customize, you may copy and adapt the examples provided following the directory structure above. - -More details in the [config README](dot/config/README.md). +### Please refer to [CONTRIBUTING.md](./CONTRIBUTING.md) for information on more complex configuration options. ## How to visualize the results using Superset From 7380bee6551938d483e75995ba8222edb7671da0 Mon Sep 17 00:00:00 2001 From: janer Date: Wed, 22 Mar 2023 14:55:16 -0400 Subject: [PATCH 20/22] Reverted changes that had overwritten the previous linting of this file. --- docker/airflow/dags/run_dot_project.py | 136 ++++++++++++------------- 1 file changed, 67 insertions(+), 69 deletions(-) diff --git a/docker/airflow/dags/run_dot_project.py b/docker/airflow/dags/run_dot_project.py index 9f32f3f..fd74307 100644 --- a/docker/airflow/dags/run_dot_project.py +++ b/docker/airflow/dags/run_dot_project.py @@ -20,11 +20,11 @@ def get_object( - object_name_in, - earliest_date_to_sync, - date_field, - source_conn_in, - columns_to_exclude, + object_name_in, + earliest_date_to_sync, + date_field, + source_conn_in, + columns_to_exclude, ): """ @@ -47,9 +47,18 @@ def get_object( connection = BaseHook.get_connection(source_conn_in) - sql_stmt = "SELECT * FROM " + connection.schema + "." + object_name_in + sql_stmt = ( + "SELECT * FROM " + + connection.schema + + "." + + object_name_in + ) if date_field != None: - sql_stmt += " WHERE " + date_field + " >= '" + earliest_date_to_sync + "'" + sql_stmt += (" WHERE " + + date_field + + " >= '" + + earliest_date_to_sync + + "'") print(sql_stmt) pg_hook = PostgresHook(postgres_conn_id=source_conn_in, schema=source_conn_in) pg_conn = pg_hook.get_conn() @@ -58,13 +67,13 @@ def get_object( data = cursor.fetchall() sql_stmt = ( - "SELECT column_name, data_type FROM INFORMATION_SCHEMA.COLUMNS WHERE table_name = '" - + object_name_in - + "'" - + "AND table_schema = '" - + connection.schema - + "' " - + " ORDER BY ordinal_position " + "SELECT column_name, data_type FROM INFORMATION_SCHEMA.COLUMNS WHERE table_name = '" + + object_name_in + + "'" + + "AND table_schema = '" + + connection.schema + + "' " + + " ORDER BY ordinal_position " ) print(sql_stmt) pg_hook = PostgresHook(postgres_conn_id=source_conn_in, schema=source_conn_in) @@ -76,20 +85,16 @@ def get_object( # Fail back to views if len(columns) == 0: sql_stmt = ( - 'SELECT a.attname as "column_name",' - + ' pg_catalog.format_type(a.atttypid, a.atttypmod) as "data_type" ' - + " FROM pg_attribute a " - + " JOIN pg_class t on a.attrelid = t.oid " - + " JOIN pg_namespace s on t.relnamespace = s.oid " - + " WHERE a.attnum > 0 " - + " AND NOT a.attisdropped " - + " AND t.relname = '" - + object_name_in - + "' " - + " AND s.nspname = '" - + connection.schema - + "' " - + " ORDER BY a.attnum; " + "SELECT a.attname as \"column_name\"," + + " pg_catalog.format_type(a.atttypid, a.atttypmod) as \"data_type\" " + + " FROM pg_attribute a " + + " JOIN pg_class t on a.attrelid = t.oid " + + " JOIN pg_namespace s on t.relnamespace = s.oid " + + " WHERE a.attnum > 0 " + + " AND NOT a.attisdropped " + + " AND t.relname = '" + object_name_in + "' " + + " AND s.nspname = '" + connection.schema + "' " + + " ORDER BY a.attnum; " ) print(sql_stmt) pg_hook = PostgresHook(postgres_conn_id=source_conn_in, schema=source_conn_in) @@ -131,7 +136,7 @@ def get_object( def save_object( - object_name_in, target_conn_in, data_in, column_list_in, type_list_in, source_db_in + object_name_in, target_conn_in, data_in, column_list_in, type_list_in, source_db_in ): """ @@ -159,16 +164,16 @@ def save_object( connection = BaseHook.get_connection(target_conn_in) connection_string = ( - "postgresql://" - + str(connection.login) - + ":" - + str(connection.password) - + "@" - + str(connection.host) - + ":" - + str(connection.port) - + "/" - + target_conn_in + "postgresql://" + + str(connection.login) + + ":" + + str(connection.password) + + "@" + + str(connection.host) + + ":" + + str(connection.port) + + "/" + + target_conn_in ) engine = create_engine( @@ -185,7 +190,7 @@ def save_object( # This will also drop any DOT model views onto this data if MODE == "replace": with PostgresHook( - postgres_conn_id=target_conn_in, schema=target_conn_in + postgres_conn_id=target_conn_in, schema=target_conn_in ).get_conn() as conn: cur = conn.cursor() query = f"DROP TABLE IF EXISTS {schema}.{object_name_in} CASCADE;" @@ -197,7 +202,7 @@ def save_object( # Test to see if schema exists, if not, create with PostgresHook( - postgres_conn_id=target_conn_in, schema=target_conn_in + postgres_conn_id=target_conn_in, schema=target_conn_in ).get_conn() as conn: cur = conn.cursor() query = f"CREATE SCHEMA IF NOT EXISTS {schema};" @@ -223,12 +228,12 @@ def save_object( def sync_object( - object_name_in, - earliest_date_to_sync, - date_field, - source_conn_in, - target_conn_in, - columns_to_exclude, + object_name_in, + earliest_date_to_sync, + date_field, + source_conn_in, + target_conn_in, + columns_to_exclude, ): """ @@ -264,7 +269,6 @@ def sync_object( object_name_in, target_conn_in, data, column_list, type_list, source_conn_in ) - def drop_tables_in_dot_tests_schema(target_conn_in, schema_to_drop_from): """ We are syncing new data where new columns and columns types might change. @@ -285,24 +289,21 @@ def drop_tables_in_dot_tests_schema(target_conn_in, schema_to_drop_from): """ with PostgresHook( - postgres_conn_id=target_conn_in, schema=target_conn_in + postgres_conn_id=target_conn_in, schema=target_conn_in ).get_conn() as conn: cur = conn.cursor() query1 = f"SET search_path TO {schema_to_drop_from}" - query2 = ( - f"DO $$ DECLARE " - f"r RECORD; " - f"BEGIN " - f"FOR r IN (SELECT table_name FROM information_schema.tables WHERE table_schema = current_schema()) " - f"LOOP " - f"EXECUTE 'DROP TABLE IF EXISTS ' || QUOTE_IDENT(r.table_name) || ' CASCADE'; " - f"END LOOP; " - f"END $$; " - ) + query2 = f"DO $$ DECLARE " \ + f"r RECORD; " \ + f"BEGIN " \ + f"FOR r IN (SELECT table_name FROM information_schema.tables WHERE table_schema = current_schema()) " \ + f"LOOP " \ + f"EXECUTE 'DROP TABLE IF EXISTS ' || QUOTE_IDENT(r.table_name) || ' CASCADE'; " \ + f"END LOOP; " \ + f"END $$; " cur.execute(query1) cur.execute(query2) - def run_dot_app(project_id_in): """ Method to run the DOT. @@ -335,10 +336,10 @@ def default_config(): with DAG( - dag_id="run_dot_project", - schedule_interval="@weekly", - start_date=datetime(year=2022, month=3, day=1), - catchup=False, + dag_id="run_dot_project", + schedule_interval="@weekly", + start_date=datetime(year=2022, month=3, day=1), + catchup=False, ) as dag: config = json.loads(Variable.get("dot_config", default_var=default_config().read())) @@ -374,7 +375,7 @@ def default_config(): python_callable=drop_tables_in_dot_tests_schema, op_kwargs={ "target_conn_in": target_conn, - "schema_to_drop_from": schema_to_drop_from, + "schema_to_drop_from": schema_to_drop_from }, dag=dag, ) @@ -384,10 +385,7 @@ def default_config(): for i in range(len(objects_to_sync)): object_name = objects_to_sync[i]["object"] - if ( - "date_field" in objects_to_sync[i] - and objects_to_sync[i]["date_field"] != "" - ): + if "date_field" in objects_to_sync[i] and objects_to_sync[i]["date_field"] != "": date_field = objects_to_sync[i]["date_field"] else: date_field = None From 0f96ebd82f4a1a89efc4027fedd6c6ca7bfdfb25 Mon Sep 17 00:00:00 2001 From: janer Date: Wed, 22 Mar 2023 14:59:33 -0400 Subject: [PATCH 21/22] Reverted left over changes that had overwritten the previous linting of this file. --- docker/airflow/dags/run_dot_project.py | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/docker/airflow/dags/run_dot_project.py b/docker/airflow/dags/run_dot_project.py index fd74307..0256c2a 100644 --- a/docker/airflow/dags/run_dot_project.py +++ b/docker/airflow/dags/run_dot_project.py @@ -220,7 +220,7 @@ def save_object( using = f"USING {col}::{type}" query = f"ALTER TABLE {schema}.{object_name_in} ALTER COLUMN {col} TYPE {type} {using};" with PostgresHook( - postgres_conn_id=target_conn_in, schema=target_conn_in + postgres_conn_id=target_conn_in, schema=target_conn_in ).get_conn() as conn: cur = conn.cursor() print(query) @@ -272,10 +272,9 @@ def sync_object( def drop_tables_in_dot_tests_schema(target_conn_in, schema_to_drop_from): """ We are syncing new data where new columns and columns types might change. - Postgres will prevent ALTER TABLE if any views exist, so we will drop all - tables in the dot test schema. These will be recreated in the dot run. - This assumes the dot tests schema is dot_data_tests - (defined as variable "schema_to_drop_from"). + Postgres will prevent ALTER TABLE if any views exist, so we will drop all tables in the dot test schema. + These will be recreated in the dot run. + This assumes the dot tests schema is dot_data_tests (defined as variable "schema_to_drop_from"). 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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_idEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_idEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Each run of DOT will test data for a given project. Typically a project relates to a database where the data is, but it can also be a useful way to split DOT runs into different data groups.

\n\n

Project fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
project_idIdentifier for the projectballroom_dancing
activeFlag to indicate if the project is active for scanning. Useful for quickly activating/deactivating all tests for a given project✓
descriptionMore details for the project\n\t\t\t

This project tests data as gathered by the ballroom dancing monitoring initiative

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_idEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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Entities are database views which contain the data DOT will test. You provide the SQL for these views and DOT will generate them automatically. Typically each view is a select statement onto an underlying database table or view, but you can also use SQL to combine data from multiple objects.

\n\n

Entity fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_idEntity namefandango_events
entity_categoryEntity category, using categories defined in DOT categoriesflamenco_dance
entity_definitionThe SQL statement which gets the data DOT will scan\n\t\t\t

SELECT * from dance_events where type = 'flamenco' 

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The entities (database views) that contain the data DOT will test, can be assigned categories. This is useful for analysis and dashboards as test results can be shown by category.

\n\n

Category fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
entity_categoryCategoryflamenco_dance
descriptionMore details for the category\n\t\t\t

Data for dancing which originate from flamenco

\n\t\t\t
\n\n

 

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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The tests DOT will run are defined here.  

\n\n

Test fields

\n\n\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\t\n\t\t\t\n\t\t\t\n\t\t\t\n\t\t\n\t\n
FieldDescriptionExample
test_activatedA toggle to turn a tests on/off without having to delete them.✓
project_idThe project, as defined under 'Projects'\n\t\t\t

ballroom_dancing

\n\t\t\t
descriptionDescription for the testTest that dancing shoes type is not null
priorityPriority of the test (1-10) where 1 indicates test fails of this test need urgent attention. Useful for dashboarding3
entityThe entity (database view as defined under 'Entities') that the test will run againstfandango_events
test_typeType of tests DOT performs. You will be prompted from a drop-down to set thisnot_null
column_nameColumn name a test should apply. Note, this isn't mandatory for all test typesdancing_shoes
test_parametersJSON record defining parameters for the test\n\t\t\t

{

\n\n\t\t\t

    form_name: 'dance_survey'

\n\n\t\t\t

}

\n\t\t\t
scenario_idInconsistent or Problematic (IoP) data scenario. You will be prompted from a drop-down to set this. These scenarios can be modified/extended by updating the data in the dot.scenarios tableINCONSISTENT-1
proposed_remediationOptional field to indicate remediation for tests that failEscalate to dance development team
\n\n

 

\n\n

Bulk Activating/Deactivating tests

\n\n

As well as activating and deactivating tests by editing individual tests, you can also bulk-select tests using the radio button on the far-left of the table, then clicking the 'Activate/Deactivate' button above the table.
\n
\nBulk Deletion of tests

\n\n

Similar to bulk activation/deactivation, you can select multiple tests and delete them by clicking the 'Delete tests' button above the table.

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'' : appsmith.user.name == null","insert_form.formData.entity_category","insert_form.formData.entity_id"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"id":"Entities_InsertQuery","deleted":false,"gitSyncId":"62bcfc1bb293c75c97818326_62bcfc1bb293c75c97818343"},{"pluginType":"DB","pluginId":"postgres-plugin","unpublishedAction":{"name":"Projects_Dropdown","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Entities","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"select \n project_id as \"label\",\n project_id as \"value\"\nfrom \n dot.projects\n","selfReferencingDataPaths":[],"pluginSpecifiedTemplates":[{"value":true}]},"executeOnLoad":true,"dynamicBindingPathList":[],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":[],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"Projects_Dropdown","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Entities","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"select \n project_id as \"label\",\n project_id as \"value\"\nfrom \n 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'' : appsmith.user.name == null }}',\n\t\t NOW(),\n\t\t NOW()) ;\n","selfReferencingDataPaths":[],"pluginSpecifiedTemplates":[{"value":false}]},"executeOnLoad":false,"dynamicBindingPathList":[{"key":"body"}],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["Edit_Add_Test_Form.formData.description","Edit_Add_Test_Form.formData.scenario_id","Edit_Add_Test_Form.formData.impact","Edit_Add_Test_Form.formData.entity_id","Edit_Add_Test_Form.formData.priority","Edit_Add_Test_Form.formData.project_id","Edit_Add_Test_Form.formData.test_type","Edit_Add_Test_Form.formData.column_name","Edit_Add_Test_Form.formData.proposed_remediation","appsmith.user.name == null ? '' : appsmith.user.name == null","Edit_Add_Test_Form.formData.test_activated","Edit_Add_Test_Form.formData.form_test_parameters_string"],"userSetOnLoad":false,"confirmBeforeExecute":false,"policies":[],"userPermissions":[]},"publishedAction":{"name":"Add_Test","datasource":{"name":"dot_db_local","pluginId":"postgres-plugin","messages":[],"isAutoGenerated":false,"id":"dot_db_local","deleted":false,"policies":[],"userPermissions":[]},"pageId":"Tests","actionConfiguration":{"timeoutInMillisecond":10000.0,"paginationType":"NONE","encodeParamsToggle":true,"body":"INSERT INTO dot.\"configured_tests\" (\n\t \"test_id\",\n \"test_activated\" ,\n\t\t\"project_id\",\n\t\t\"scenario_id\" ,\n\t\t\"priority\",\n\t\t\"description\" ,\n\t\t\"impact\",\n\t\t\"proposed_remediation\" ,\n\t\t\"entity_id\",\n\t\t\"test_type\" ,\n\t\t\"column_name\" ,\n\t\t\"test_parameters\",\n\t \"last_updated_by\",\n\t \"date_added\",\n\t \"date_modified\"\n) VALUES(\n\t uuid_generate_v3(uuid_ns_oid(), '123'), \n {{Edit_Add_Test_Form.formData.test_activated}},\n\t\t'{{Edit_Add_Test_Form.formData.project_id}}',\n\t\t'{{Edit_Add_Test_Form.formData.scenario_id}}',\n\t\t {{Edit_Add_Test_Form.formData.priority}},\n\t\t'{{Edit_Add_Test_Form.formData.description}}',\n\t\t'{{Edit_Add_Test_Form.formData.impact}}',\n\t\t'{{Edit_Add_Test_Form.formData.proposed_remediation}}',\n\t\t'{{Edit_Add_Test_Form.formData.entity_id}}',\n\t '{{Edit_Add_Test_Form.formData.test_type}}',\n\t '{{Edit_Add_Test_Form.formData.column_name}}',\n\t\t'{{Edit_Add_Test_Form.formData.form_test_parameters_string}}',\n\t\t'{{appsmith.user.name == null ? '' : appsmith.user.name == null }}',\n\t\t NOW(),\n\t\t NOW()) ;\n","selfReferencingDataPaths":[],"pluginSpecifiedTemplates":[{"value":false}]},"executeOnLoad":false,"dynamicBindingPathList":[{"key":"body"}],"isValid":true,"invalids":[],"messages":[],"jsonPathKeys":["Edit_Add_Test_Form.formData.description","Edit_Add_Test_Form.formData.scenario_id","Edit_Add_Test_Form.formData.impact","Edit_Add_Test_Form.formData.entity_id","Edit_Add_Test_Form.formData.priority","Edit_Add_Test_Form.formData.project_id","Edit_Add_Test_Form.formData.test_type","Edit_Add_Test_Form.formData.column_name","Edit_Add_Test_Form.formData.proposed_remediation","appsmith.user.name == null ? 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' ' : params[0].description;\n\t\treturn tooltip;\n\t},\n\tgetTestParameterExample: (test_parameter_in) => { \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar example = params.length == 0 ? ' ' : params[0].example;\n\t\treturn example;\n\t},\n\tgetTestTypeDescription: (test_type_in) => { \n\t\t// Filter \n\t\tvar params = Test_Types_Cache.data.filter(function (el) {\n \t\treturn el.test_type == test_type_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? ' ' : params[0].description;\n\t\treturn tooltip;\n\t}\n}","variables":[],"userPermissions":[]},"publishedCollection":{"name":"JSFunctions","pageId":"Tests","pluginId":"js-plugin","pluginType":"JS","actions":[],"archivedActions":[],"body":"export default {\n\tallowUpdate: () => !!configured_tests.selectedRows.length,\n\tgetIds: () => {\n\t\treturn `(${configured_tests.selectedRows.map(item => `\\'${item.test_id}\\'`).join(\", \")})`\n\t},\n\tbulkUpdate: () => {\n\t\tlet test_activated_b = test_activated_bulk.isChecked;\n\t\tBulk_Update_Test_Activated.run(() => {\n\t\t\tshowAlert('Successfully updated test activation status');\n\t\t\tcloseModal('Activate_Tests_Modal');\n\t\t\tresetWidget('test_activated_bulk');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_activated_bulk': test_activated_b, 'test_ids': this.getIds()});\n\t},\n\tbulkDelete: () => {\n\t\tBulk_Delete_Tests.run(() => {\n\t\t\tshowAlert('Successfully deleted tests');\n\t\t\tcloseModal('Delete_Tests_Modal');\n\t\t\tConfigured_tests_data.run();\n\t\t}, () => {}, {'test_ids': this.getIds()});\n\t},\n\t// Flag to say if a test_type uses test_parameters in configured_tests\n\ttestUsesParameters: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Parameters.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\t// Flag to say if a test_type uses columns in configured_tests\n\ttestUsesColumn: (test_type_in) => {\n\t\tconst test_types = Test_Types_That_Use_Column.data.map(item => { return item.test_type;});\n\t\treturn test_types.includes(test_type_in);\n\t},\n\tparamIsVisible: (test_type_in, param_in) => {\n\t\tconst params = Test_Parameters.data.map(item => { return item.test_type == test_type_in ? item.parameter : undefined;});\n\t\treturn params.includes(param_in);\n\t},\n\tgetEntityColumns: (project_id_in, entity_id_in, data_type_in) => { \n\t\t//project_id_in = 'Brac';\n\t\t//entity_id_in = 'ancview_pregnancy';\n\t\t// JSON forms don't allow us to access selected label, unlike regular forms, so we need tor strip out artifacts\n\t\t// TODO Refactor test_parameters to lose dbt artifacts like ref('')\n\t\tentity_id_in = entity_id_in == undefined ? undefined : entity_id_in.replace(\"ref('dot_model__\",\"\").replace(\"')\",\"\");\n\t\t// Filter and subset\n\t\tvar columns = Entity_column_names_cache.data.filter(function (el) {\n \t\treturn (el.entity_id == entity_id_in || entity_id_in == undefined) &&\n\t\t\t\t (el.entity_id == entity_id_in || entity_id_in == undefined) &&\n\t\t\t\t (el.project_id == project_id_in || project_id_in == undefined) &&\n\t\t\t\t (el.data_type == data_type_in || data_type_in == undefined);\n\t\t}).map( ({label, value}) => ({label, value} ) );\n\t\treturn columns;\n\t},\n\tgetTestParameterDescription: (test_parameter_in) => { \n\t\t//test_parameter_in = 'values';\n\t\t// Filter \n\t\tvar params = Test_Parameters_Cache.data.filter(function (el) {\n \t\treturn el.parameter == test_parameter_in;\n\t\t});\n\t\tvar tooltip = params.length == 0 ? 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