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Subclustering #46

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Subclustering #46

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andpet0101
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This pull request contains the subclustering module. It implements:

  • removing of clusters (but doing it at the QC is a better option)
  • merging/renaming of clusters
  • splitting of clusters with three different approaches
    • simple subclustering with FindSubClusters
    • subclustering with k-means
    • full subclustering by running a full analysis on the subset

The module is interactive meaning you need to run it at least once manually. The existing code chunks are templates and currently deactivated. To use a chunk, make a copy, remove the HTML comments (<!-- ... ->) and set the chunk option eval to true. The keyword USER_INPUT lets you know that you need to change something.

Once all subclustering is implemented by you, the module can be run automatically.

The module may be run between clustering_umap and cluster_qc .

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