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_pkgdown.yml
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/
_pkgdown.yml
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url: https://dd-harp.github.io/mobwork/
template:
bootstrap: 5
navbar:
left:
- text: Functions
href: reference/index.html
- text: Articles
menu:
- text: How to add a new X model
href: articles/X-How_To_Add_Model.html
- text: Adult Mosquito
menu:
- text: The SIS model
href: articles/Xmod-SIS.html
- text: Adult Mosquito
menu:
- text: The RMG Model
href: articles/MYZmod-RMG.html
right:
- icon: fa-github
href: https://github.com/dd-harp/exDE/
home:
sidebar:
structure:
- links
- license
- community
- citation
- authors
- dev
- custom_news
components:
custom_news:
title: Changelog
text: <a href="news/index.html">News</a>
reference:
- title: Analytics
- subtitle: Compute Scaling Relationships
contents:
- xde_scaling
- xde_scaling_Z
- xde_scaling_eir
- xde_scaling_lambda
- pr2Lambda
- ssMYZ
- subtitle: Convert Scaling Relationships
contents:
- xde_eir2ni
- xde_eir2pr
- xde_pr2eir
- xde_pr2ni
- xde_pr2m
- xde_pr2lambda
- title: Adult Mosquito Models
desc: |
The model library for adult mosquito infection dynamics
- subtitle: The Adult Mosquito RMG Model
contents:
- F_eggs.RMG
- F_fqZ.RMG
- F_fqM.RMG
- MBionomics.RMG
- dMYZdt.RMG
- get_inits_MYZ.RMG
- make_MYZinits_RMG
- make_MYZpar_RMG
- make_indices_MYZ.RMG
- make_inits_MYZ_RMG
- make_parameters_MYZ_RMG
- parse_deout_MYZ.RMG
- setup_MYZpar.RMG
- setup_MYZinits.RMG
- update_inits_MYZ.RMG
- title: Human / vertebrate host infection & Immunity
desc: |
The model library
- subtitle: New Utilities
contents:
- split_stratum_by_biting
- subtitle: The SIS Model
contents:
- split_stratum_by_biting.SIS
- subtitle: The Garki model
contents:
- F_X.garki
- F_H.garki
- F_pr.garki
- F_b.garki
- dXdt.garki
- setup_Xpar.garki
- setup_Xinits.garki
- make_Xpar_garki
- make_Xinits_garki
- make_indices_X.garki
- parse_deout_X.garki
- get_inits_X.garki
- update_inits_X.garki
- HTC.garki
- xde_plot_X.garki
- xde_lines_X_garki
- subtitle: The SIR model
contents:
- F_X.SIR
- F_H.SIR
- F_pr.SIR
- F_b.SIR
- dXdt.SIR
- setup_Xinits.SIR
- setup_Xpar.SIR
- make_Xpar_SIR
- make_Xinits_SIR
- make_indices_X.SIR
- parse_deout_X.SIR
- get_inits_X.SIR
- update_inits_X.SIR
- HTC.SIR
- xde_plot_X.SIR
- xde_lines_X_SIR
- subtitle: The SEIR model
contents:
- F_X.SEIR
- F_H.SEIR
- F_pr.SEIR
- F_b.SEIR
- dXdt.SEIR
- setup_Xpar.SEIR
- setup_Xinits.SEIR
- make_Xpar_SEIR
- make_Xinits_SEIR
- make_indices_X.SEIR
- parse_deout_X.SEIR
- get_inits_X.SEIR
- update_inits_X.SEIR
- HTC.SEIR
- xde_plot_X.SEIR
- xde_lines_X_SEIR
- title: Plot terms
contents:
- plot_eirVpr
- lines_eirVpr
- plot_eirpr
- lines_eirpr