Dibyendu Bikash Seal, Vivek Das, Rajat K. De, "A cell-type annotation method for single cell transcriptomics data using semi-supervised learning. This project aims at learning cell annotations for missing cell labels via NMF and recursive k-Means clustering"
Seal, D.B., Das, V. & De, R.K. CASSL: A cell-type annotation method for single cell transcriptomics data using semi-supervised learning. Appl Intell (2022). https://doi.org/10.1007/s10489-022-03440-4
Dibyendu Bikash Seal
A. K. Choudhury School of Information Technology, University of Calcutta, JD - II, Sector III, Salt Lake City, Kolkata 700106, India
E-mail: [email protected]
Vivek Das
Novo Nordisk A/S, Novo Nordisk Park 1, 2760 M ̊aløv, Denmark
E-mail: [email protected]
Rajat K. De
Machine Intelligence Unit, Indian Statistical Institute, 203 Barrackpore Trunk Road, Kolkata 700108, India
E-mail: [email protected]
To test CASSL on datasets with missing annotations, run CASSL.ipynb.
To validate CASSL on datasets with no missing annotations, run CASSL_Validation.ipynb. Go to "Remove p% labels" sub-section and set the percentage of cells to be used for training.
https://doi.org/10.5281/zenodo.5681184
