Facing issues with the Level-Dimensions in Leica .scn Images

[hitesha14]

Hi @deroneriksson

I have gone through your blog and found it very useful. However I am facing issues regarding the WSI Level for Leica .scn images. Whenever i use the function slide_info() from the openslide package to get information about he dimensions, it gives incorrect information. The information doesn't seem to match the information from the image.

I am hereby attaching the details of 2 WSI and their information from the slide_info() function and from the actual WSI. The width and height at each and every level dont seem to match at all. As a result I get tiles with huge y-coordinates and few tiles are completely black. For two different WSI , openslide slide_info() function gives same level values and same dimensions which is not possible at all.

Request you to kindly inspect the issue and let me know about it, I am unable to proceed with my research. What is the workaround for such issues?

Regards,
Hitesha

nims-002.txt

nims-004.txt