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ReleaseNotes.txt
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LIMA Release Notes
This is the release notes of LIMA, the library for image acquisition.
You can find information related to new features and bug fixes.
Some bug fix on new features can reference gitlab.esrf.fr merge requests as MR-XXX.
Version v1.9.10 released on August 13th 2021
--------------------------------------------
Conda
To install the conda packages and since lima 1.9.8 the conda-forge channel must be set as the main one:
* https://lima1.readthedocs.io/en/latest/build_install.html#install-binary-packages
New features
* RoiCollection new processlib sinktask now available
* RoiCollection and RoiCounter accept a overflow threshold value to cut off randomly defective pixel
Bug fixes
* CtBuffer: An overflow on the max number of buffer
Camera updates
* Dhyana v1.9.1
* Hw Roi do not check supported camera Roi
The Dhyana 95 camera only support X offset as multiple of 4 and width (X) as multiple of 8
* export Tucam trigger mode and trigger edge
* The camera supports as default mode a roller shutter and can be switch to global mode or synchronous mode. In addition the input trigger can be detected on rising or falling edge:
* Few fixes as well, the pixelsize in meter now, the firmware version is a string.
* Manage the cold start and take a fake acquisition, otherwise the detector does not start on the first trigger.
* set the trigger mode in prepareAcq
* prepareAcq must not start the acquisition
* Some refactoring needed to move the start of the acquisition to startAcq and only prepare buffer or acquisition parameters like trigger mode in prepareAcq
* Add ExtTrigSingle
* Eiger v1.9.8
* workaround for bug in restful api of simplon 1.8 with filewriter "files" command returning a null string instead of a empty string list when there is no file
* HW saving: fix setCommonHeader() for eiger2 api pass double value
* add threshold_energy2
* add threshold_diff_mode
* tango:
* add detector_ip attribute (ro) to get the ip address of the detector DCU, useful to send curl command to the detector DCU
* add threshold_energy2 attribute (rw)
* add threshold_diff_mode attribute (rw)
* Pilatus
* v1.9.5
* nb frames max 65535 only for IntTrig trigger mode
* v1.9.4
* support for live mode (frames = 0)
* increase TmpfsBuffer to 95% of the file-system provided (typically a ramdisk)
* v1.9.3
* Manage S series where hw-roi is not supported: add a camera_s_serie keywork in camera.def
Version v1.9.9 released on June 1st 2021
----------------------------------------
Bug fixes
* fix a bug introduced in version 1.9.7: Do not clear frame/common headers in CtSaving::clear(), user can use explicit commands instead
* conda CI: conda-forge channel added for windows gitlab CI
Version v1.9.8 released on March 18th 2021
------------------------------------------
Bug fixes
* Can compile over processlib v1.7.5 (roicollection)
* Fix libconfig find for both windows and linux and using conda-forge new package
New features
* Pin processlib to 1.7* version 1.8* is sip incompatible and will be used from lima-core 1.10
* CtSaving refactoring which manages now frames per file and last file with less frames when total number of frames is not a modulo of the nb_frame_per_file
Version v1.9.7 released on January 15th 2021
-------------------------------------------
New features
* Conda: stop support for python 2.7 and 3.6
Bug fixes
* Check whether the acquisition is still running when detructing CtControl and stop the aquistion accordingly
* Call H5garbage_collect at the begin of SaveContainer_Hdf5::_prepare
* Fix CtSaving data race conditions
* Fix data race in CtSaving::Stream::m_cnt_status
* Fix HwBufferMgr when nb of available buffers decreases (e.g. to_alloc is negative)
* Fixes some artihmetic overflows, uninitialized variables and throws where code should be noexcept
* Fix CtImage (more missing SwapDimIfRotated for binning)
* Add missing Fault status to python hardware interface
Camera updates
* Eiger v1.9.5
* http_port property added for Tango device
* Add retrigger command
* Add high voltage reading (measured and target)
add high voltage state reading and reset command
* Add Warning message when Command data does not fit in buffer
* Use better way to read DETECTOR_READOUT_TIME among different API vesions:
* First try reading min value, use main value if negative
* Limit ZMQ poll time to 2 sec after an abort:
* Acquisition does not dead-lock if dseries_end header is not received
* Correct plugin_status attributes which conflict with standard tango status
* Deal with trigger command issues due timeout in lengthy acquisitions (> 5 min)
* Identify HTTP response codes in Commands; report error for codes 4xx and 5xx
* Fix issues in IntTrigMult:
* Bug incrementing m_frames_triggered
* Fix Camera and Interface status when Armed
* Remove unnecessary check in Interface::startAcq (improved in CtControl)
* Pilatus v1.9.2
* In Tango plugin fix a host_port misinterpreted type, now accept port number as an integer
* Lambda v1.9.0
* use now X-Spectrum SDK version 1.3.2. A conda package is available for the SDK xspectrum-sdk on esrf-bcu channel
PyTango server updates
v1.9.9
* Bug fixes
* shared_memory_ attributes silently ignored in read or write if the Display module is not available
* Unused code clean up and python2 backward compatibility restored
* acc_saturated_cblevel attribute ignores read/write if no module is loaded
* Tango event of last-image-changed fixed to not lost last events before the acquisition finishes
* New features
* RoiCounter and RoiSpectrum mask now support SILX 0.14 file format
* BackgroundSubtraction: takeNextAcquisitionAsBackground() command cam be called during an acquisition
v1.9.8
* New features for RoiCounters
* makes BufferSize and MaskFile always accessible
* added MaskFile Property and Attribute on RoiCounter
* raise ValueError in case mask file cannot be read
Version v1.9.6 released on September 25th 2020
----------------------------------------------
New features
* lima_conda_build script: local Conda compilation with optimization for native architecture
Bug fixes
* MR-131: InvalidValue exception, roi-out-of-limits when applying rotation with an image_roi
already defined
fix computation of the max_roi according to the current binning and rotation
Add equality operators for Size and their missing python bindings for Point, Size and FrameDim
Add test for ROI computation for every bin / flip / rot
* MR-130: continuous acquisition and hdf5 saving broken
fix deadlock resulting in saving task stall and consequently AcqStatus being AcqRunning
indefinitely
fix _calcAcqStatus when acq_nb_frames == 0
* MR-120: stopAcq() destroying non empty allocator
Do not destroy default Allocator until it's empty
Camera updates
* Maxipix 1.9.1: fixed latency_time calculation when in hardware trigger mode
* Pilatus 1.9.1:
* Bug Fix: IntTrigMult trigger mode, mode to software trig each image exposing,
has been repaired, and can be use now to have faster software acquisition sequence
* New Features:
Tango: new properties to run the server on a slave computer, not only on the DCU computer:
- tmpfs_path. default = /lima_data
- host_name, default = localhost
- host_port, default = 41234
- config_path, default = /home/det/p2_det/config/cam_data/camera.def
* Simulator 1.9.2:
* Fix EDF Parser (allow smaller header block of 512Kib)
* Fix Prefetch mode (segfault and/or black images with some use cases)
New cameras
* Arinax: The OAV B-ZOOM is an On-Axis Video-microscope with a hybrid zoom system used for
parallax free observation of micrometer sized crystals. It is optimized for MX crystallography
beamlines and high throughput stations in Synchrotrons.
* QHYccd: high-performance scientific grade CMOS and CCD cameras
Version v1.9.5 released on July 23th 2020
----------------------------------------
New features
* HDF5 container:
* new attributes "file_name" and "file_time" to keep track of the original
file path and creation date.
* adjust the image dataset size to the number of acquired frames
* in manual saving, keep a contiguous frame dataset
* Avoid Tango dead-lock timeout due to lengthy memory allocations
Bug fixes
* fix cmake find_package_handle_standard_args warning
* fix conversion compiler warning when calling import_array macro.
* HDF5 container:
* Fix parallel saving:
* Refactor SaveContainerHdf5::_File:
* Add debug information when writing HDF5 Dataset chunk fails
* Remove unused variables
* Use AutoPtr for dynamically-allocated objects
* Simplify initialization at _open
* fixed bug with number of frames for last file.
* adjust the image dataset to the real number of acquired frames
* Fix bug in CtControl::unregisterImageStatusCallback and improve code:
* Allow unregisterImageStatusCallback if acq is not Ready
* Do not throw exception: it is called from cb destructor
* Status can be AcqFault, which is perfectly legal to unregister
* Cosmetics
* ThreadUtils: remove obsolete declarations in ReadWriteLock
Version v1.9.4 released on May 25th 2020
----------------------------------------
New features
* IntTrigMult: fix check of extra calls to CtControl::startAcq()
* Protect if detector is Ready but has not injected yet the last image into Lima
* HDF5: NXmeasurement does not exist, use NXcollection instead
Bug fixes
* remove (gcc) compiler warnings
* memory leak in ImageZCompression (HDF5GZ)
* CtSaving: fix thread synchronization issues
* CtBuffer: wait for processing to finish before releasing all mapped buffers
* CtSaving_Compression: refactoring of the ZBufferHelper class
Camera news
* Eiger (v1.9.4): Dectris Eiger camera submodule now support setting for http and
stream port.
Version v1.9.3 released on February 21th 2020
---------------------------------------------
New features
* HDF5 schema has been simplified and now fits better with Nexus standard.
Bug fixes
* Fix HW saving when acq_nb_frames is not a multiple of FramesPerFile.
* When stopping the acquisition, update the number of expected frame to save.
camera news
* Eiger (v1.9.3): Dectris Eiger2 now supported by the eiger camera submodule
* Basler (v1.9.3): Fixed segfault with color models, Scout model does not support
AcquisitionFrameCount.
* Basler (v1.9.2): Fixed a segmentation fault error when Roi is set and camera
is running in continuous mode (live mode)/
Version v1.9.2 released on February 17th 2020
---------------------------------------------
New features
* CI pipeline on gitlab.esrf.fr has now downstream test on simulator camera submodule
Bug fixes
* check if hdf5 attribute exists before creating it
* Resolve "saving statistic missed"
* Flush statistic log file
* Use more explicit variable name in CtControl::newImageSaved
Version v1.9.1 released on September 13th 2019
----------------------------------------------
New features
* More conda packages for cameras are now supported:
andor3, andor, basler, dexela, eiger, frelon,
frelon, imxpad, maxipix, marccd, merlin,
mythen3, pco, pilatus, pixirad, pointgrey,
prosilica, simulator, slsdetector, ueye,
v4l2, xh
* Some refactoring and optimisation of the software buffer classes
* Support added for Numa (non-uniform memory access) memory management
Bug Fixes
* CBF saving format now fits with miniCBF spec for Pilatus detectors
* Video: fixed issue when taking 8/16-bit images and then changing to Accumulation
New cameras
* PCO usb
* Frelon 16
Version v1.8.0 released on February 2nd 2019
--------------------------------------------
With this release we introduced the following new features:
* Build system has been refactored to use CMake, a cross-platform build system (Windows and Linux)
* Building camera either standalone or using Lima as master project
* Better support for C++ developers (with CMake packages)
* Install.(sh|bat) to ease build and installation for CMake averse :-)
* Conda binary packages for processlib, LImA core and some cameras and pytango device server
* Support for Python 3
* CI running on ESRF's Gitlab instance
* Documentation improvements and migrated to ReadTheDocs (https://lima1.readthedocs.io)
* Use semantic versionning
* New HDF5 layout, direct chunk and bitshuffle LZ4 / gzip compression support
* New BPM pytango plugin, Beam Position Monitor
* Simulator improvements (new prefetch and read from files modes)
## New camera plugins
* ZWO camera plugin (thanks to Jens Krueger)
* SlsDetector (PSI Eiger) camera plugin (thanks to Alejandro Homs)
* FLI (Finger Lake Instrument) camera plugin (thanks to Laurent Claustre)
* Lambda (Quantum) camera plugin (thanks to Teresa Nunez)
Stable branch core-1.7
----------------------
core-1.7.2 2017-02-03
Bug Fixes
* video: Fixed an inconsistency for scientific (monochrome) camera between
getSupportedVideoMode() and getMode().
core-1.7.1 2017-01-06
Features
* new tag 1.7.0 for cameras: andor/andor3/basler/dexela/espia/frelon/
maxipix/perkinelmer/pixirad/pointgrey/prosilica/roperscientific/simulator/
ueye/v4l2/xh
Bug Fixes
* maxipix: maxipix-1.7.1, Fixed for setFillMode, 2 reconstructionTask objects
created one passed to HwInterface the other kept internally in Camera object
* basler: basler-1.7.2, fixed monochrome vs. color mode
* basler: basler.-1.7.1, fixed bug introduced in 1.7.0 for Roi increments
* saving cbf: fixed Makefile + bison parser generation
New patch version just for CBF compilation
core-1.7.0 2017-04-01
Features
* Makefile: Improve Makefile library dependency definitions for parallel build
* tango: server with new saving statistics and with abort command
* basler: for color camera added yuv422packed video format
* saving header: add acquisiton and images parameters
* saving: added statistics.
We can now have saving, compression and incoming speed statistics
changing cbf,edf,fits,hdf5,nxs and tiff to manage statistics
* software operation: add possibility to force a copy for the first operation
internals operation are normally done in place but it's not always
safe with some type of memory.
i.e: You can not memove on a memory map, this cause a crash.
* saving: we can now write severals frames in parallel.
To control saving concurrency, you have to change the number of writing task
with method get/setMaxConcurrentWritingTask.
This commit contains also a small fix for write statistics:
As we recreate the container when changing saving type, thoses parameters
were not keeped.
We now set event callback in case of error when writing.
* saving cbf: compession optimisation with CBFMiniHeader format.
For now is only available for INT 32 images.
* control: added abort acquisition method
* basler: Pylon5 support and find proper pylon link flags
Bug Fixes
* video: fixed synchro to image when changing video mode.
- WARNING: only applied when live is started on already running
* saving cbf: fixed a bug in cbf header
* image: fixed roi when software operation is activated (rotation,flip...)
* image: fixed maximum roi
Stable branch core-1.6
----------------------
core-1.6.2 2016-09-29
Features
* tango python: added support for edf.lz4
* basler: Merge pull request for new initialisation with serial number, user name or IP address.
* pixirad: documentation updated, final cleanup of the code.
Bug fixes
* image: fixed getRoi, returns now full frame roi if no roi was set.
core-1.6.1 2016-08-04
Features
* maxipix: added initialization sequence in PriamSerial contructor in case of cold start.
* andor: added enum type for BaselineClamp()
* tango python andor: updated properties vs_speed/p_gain/adc_speed to DevString type as for the attributes
Changed baseline_clamp property/attribute to DevString type
Managed UNSUPPORTED enum for baseline_clamp/high_capacity/fan_mode property/attributes
Removes label for all attributes (default is now label = attribute name) * Updated the doc/index.rst documentation
for new/changed properties/attributes
Bug fixes
* core: buildfix on arm
* andor: fixed inverted enum value for BaselineClamp
* tango python: fix in LimaCCDs configStore() command, now it accepts a list of module names
* andor: fixed a bug in getImageType() throwing exception in some conditions
core-1.6.0 2016-05-23
Features
* marccd: merged marccd from esrf
* merlin: new plugin for Merlin camera family
* pco: windows 64 version working
* xapd: refactoring and new version delivered
* sps: move Sps project to github.com
* maxipix: c++ version delivered !!
* spec: added a new hook for user macros (user2_) for add and remove of roicoutner, for further use like for zap pseudo counter.
* core: accumulation, use sse register to sum 16 bits images (optimization)
* core: prepare optimization, for linux just retrieved memory pages instead of clearing all memory.
* pixirad: new camera plugin for Pixirad camera family
* rayonixhs: a new readout mode been added, HDR16, thanks to the latest rayonix craydl sdk update.
* dexela: linux version available
* saving: add lz4 compression for edf format
* saving: changed the buffer write size to optimize GPFS throughput,
this optimization was done for cbf and edf
* perkinelmer: new version to manage XRD_1611_CP3
* tango python: added tiff as saving format
* core: Synchronize with ImageStatusCallbacks at the beginning of prepareAcq
Added CtControl::set/getPrepareTimeout methods (default 2 sec)
Include Simulator test_prepare_timeout.py script
* frelon: added Frelon::Camera::DeadTimeChangedCallback to notify Lima (Sync) about changes
in the detector-defined min_lat_time (valid_ranges)
Added Frelon TimeCalc and Acc. Mode test Python scripts
Added Frelon Readout & Charge-Transfer times by means of float registers * Frelon::SyncCtrlObj
latency time now includes the detector dead time
* core: support dynamic min_latency_time with Accumulation in CtAcquisition
* andor3: compressed data (Mono12Packed) speed up acquisition and IntTrigMult trigger mode added
* imxpad: stable version working with XpadServer version 3.0.X
* background subtraction: add constant offset before subtraction to avoid data truncated to 0
* eiger: new version with stream and hardware saving tested
* eiger: added camera module (hardware saving + stream)
* saving: Could now disable the directory event feature
add frames per file parameters in hardware saving
* tango: split python and cpp server into two submodules
* v4l2:f ixed pb when calling prepareAcq() several times
now start in the native camera video mode. fixed setMode
* ueye: patched for new sdk (4.61)
* prosilica: new version with monitor mode
* core: Manage monitor mode for cameras like prosilica or basler
* imxpad: for server version 3.X
* accumulation: enhanced Accumulation and acc_mode with new mode for threshold and/or offset correction.
Updated Spec and Tango for that purpose too.
* spec: add new accumulation mode for threshold and/or offset correction
* simulator: add IntTrigMulti capability
* saving: add timestamp in Nexus file
* v4l2: new camera plugin v4l2 now managed.
* CCfits and cfitsio: configure script will be called only once
* accumulation: extend accumulation algorithm to be able to ignore noise lower than a threshold
* added extr module type CameraPlugin for exception
* added extra path for future maxipix_c++ in configure.py
Bug Fixes
* core: accumulation, fixed a memory allocation.
* basler: external trigger fixed for ace,scout and pilot cameras
* imxpad: camWaitAcqEnd remove from prepareAcq and startAcq, waiting time move to 1s for camWaitAcqEnd()
SetModuleMask function added allowing to acquire smaller images, Abort fixed when images are transfered via TCP
* marccd: Add Mutex to setImagePath/getImagePath/..., removed useless getNbAcquiredFrames()
* merlin:check status for detector idle before startAcq, added image resizing & (image stacking - Soleil request)
* pco: a lot of fixes !!
* pilatus: extra delay removed due to wrong test in internal trigger
* ueye: fixed image bytes depth for mono 12bits camera
* spec:fixed pb when removing a roicounter, now update properly LIMA_ROI_SRV * Set the RunLevel
to 5 to allow other tasks (mask/bgd/ff/..) to be applied before roicounter
* rayonixhs: added missing callback function call for readout mode change in image_type (bpp16<-->bpp32)
* core: ThreadUtils, moved thread id to protected
* tango python: windows, fixed path issue
* processlib: windows, fixed compilation issue
* core: fixed CPU overload bug in ImageStatusThread after registering multiple ImageStatusCallbacks
* core: fixed bug crashing when SyncCtrlObj is deleted before CtAcquisition
* image: disable roi when equal to full size (optimization)
* andor: fix for mt-safe in error exception handling
* saving: fixed checkValid() missing #ifdef for TIFF, only 1 frame per file supported
* image: fixed a infinite loop in checkDirectoryAccess() when dir is an empty string
* image: fixed in reevalutation with _setHSRoi
* andor3: fixed bugs with Bin/Roi, Bin can change the hw_roi with extra stride columns
fixed bug with Bin enum. and bug with getBin
* buffer: memory management, avoid allocating memory if hardware saving is activated (optimization)
* image: reevaluate software roi when binning change
* image: fixed bug with new monitor mode
* sip: replaced tabs with blanks, otherwise will not work with python 3.
* saving: take into account the frame id in the saving callback
* xh:use int32_t instead of long
remove polluting debug message
correct sip for getMaxFrames (use str::string instead of string)
added getMaxFrames
* windows: fix export in ValidRangesCallback
* espia: added Espia::BufferMgr::CamMultiFrameXferMode enumeration type
* maxipix: fixed bug in Maxipix priam port number, now range from 1 to 5
* tango python: fixed again wizard mode
* processlib: windows compilation + roi counters mask patch
* prosilica: fixed a bug with non-color camera continuous acquisition
* spec: fixed bug with getNames() call when server is stopped.
* CCfits: fixed installation path
* control: fixed deadlock in unregisterImageStatusCallback
* video: fixing dead lock when stopping and changing expo time.
* spec: limaroi_server_initarr: use only rois that are defined for the actual lima ccdname
* accumulation: fixed memory allocation.
Stable branch core-1.5
----------------------
core-1.5.6 2015-12-21
Features
* New tags for submodules: frelon-1.5.0/andor-1.5.0/pilatus-1.5.0
* Include Simulator test_prepare_timeout.py script
* Include COMPILE_MYTHEN3 into list of exported vars in config.inc_default
* frelon: Added Frelon native min_latency_time (Readout & Transfer) support
* control: Support dynamic min_latency_time with Accumulation in CtAcquisition
Bug Fixes
* control: Synchronize with ImageStatusCallbacks at the beginning of prepareAcq
* control: Added set/getPrepareTimeout methods (default 2 sec)
core-1.5.5 2015-12-11
Features
* New tags for submodules: spec-1.4.7/andor3.1.5.1/tango-camera-andor3-1.5.1
* andor3: Compressed data (Mono12Packed) and IntTrigMult trigger mode
* tango python: andor3 updaded, no more destride attr
* spec: andor3 updaded, no more destride option
Bug Fixes
* image: fixed checkValid() missing #ifdef for TIFF, only 1 frame per file supported
* saving: Fixed a infinite loop in checkDirectoryAccess() when dir is an empty string
* image: fixed in reevalutation with _setHSRoi
* basler: external trigger fixes
* image: reevaluate software roi when binning change
core-1.5.4 2015-08-14
Features
* New tags for submodules: Espia-1.5.1/maxipix-1.5.2/v4l2-1.5.3/ueye-1.5.0/tango-camera-andor3-1.5.0
Bug Fixes
* hdf5: revert install in Makefile
core.1.5.3 2015-08-12
Features
* control: accumalation mode enhanced again
core-1.5.2 2015-07-27
Features
* New tag for andor3 needs core-1.5 for using accumulation mode
* New tag for prosilica under core-1.5
* simulator: add IntTrigMulti capability
* Updated camera/prosilica
Bug Fixes
* control: fixed deadlock in unregisterImageStatusCallback
* video: fixing dead lock when stopping and changing expo time.
core-1.5.1 2015-06-19
Features
* New tags: v4l2, basler, tango/camera/v4l2. basler-1.5.1/tango-camera-v4l2-1.5.1/v4l2-1.5.1
* Enhanced Accumulation and acc_mode with new mode for threshold and/or offset correction. Updated Spec and Tango for that purpose too.
* accumulation: extend accumulation algorithm to be able to ignore noise lower than a threshold