compose.gennifer.yaml

version: '3.8'

services:
  frontend:
    build:
        context: ./gennifer/frontend
        dockerfile: Dockerfile
    restart: always
    ports:
      - 3000:3000
    environment:
        - NEXTAUTH_SECRET=X/NTPIqf088gXiYFi7WF0iH3NRJRPE3nZ0oOkRXf5es=
        - NEXTAUTH_URL=https://chp.thayer.dartmouth.edu
        - NEXTAUTH_URL_INTERNAL=http://127.0.0.1:3000
        - CREDENTIALS_URL=https://chp.thayer.dartmouth.edu/o/token/
        - GENNIFER_CLIENT_ID=jHM4ETk5wi2WUVPElpMFJtZqwY2oBKHVMmTsY9ry
        - GENNIFER_CLIENT_SECRET=hY0XfS8YLGMojWuvUOPga4sJpEO9isltF7Xk7wXjyFHwWmxkifRXcPbnmhUM0oVO4Zlz349jbtBePIlaafkWubReqEBCoIcCzaZLa2a9pIlq55yow2TBvMDHnImrXvig
        - GENNIFER_USER_DETAILS_URL=https://chp.thayer.dartmouth.edu/users/me/
        - GENNIFER_BASE_URL=https://chp.thayer.dartmouth.edu/gennifer/api/
        - NEXT_PUBLIC_GENNIFER_BASE_URL=https://chp.thayer.dartmouth.edu/gennifer/api/
  
  pidc:
    build: 
        context: ./gennifer/pidc
        dockerfile: Dockerfile
    restart: always
    user: gennifer_user
    ports:
        - 5004:5000
    secrets:
        - gennifer_key
    environment:
        - SECRET_KEY_FILE=/run/secrets/gennifer_key
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
    command: gunicorn -c gunicorn.config.py -b 0.0.0.0:5000 'pidc:create_app()'
    #command: flask --app pidc run --debug --host 0.0.0.0
    depends_on:
        - redis
 
  worker-pidc:
    build: 
        context: ./gennifer/pidc
        dockerfile: Dockerfile
    restart: always
    command: celery --app pidc.tasks.celery worker -Q pidc --loglevel=info
    environment:
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
    depends_on:
        - pidc
        - redis
 
  grisli:
    build: 
        context: ./gennifer/grisli
        dockerfile: Dockerfile
    restart: always
    user: gennifer_user
    ports:
        - 5005:5000
    secrets:
        - gennifer_key
    environment:
        - SECRET_KEY_FILE=/run/secrets/gennifer_key
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
        - PYTHONUNBUFFERED=1
    command: gunicorn -c gunicorn.config.py -b 0.0.0.0:5000 'grisli:create_app()'
    #command: flask --app grisli run --debug --host 0.0.0.0
    depends_on:
        - redis

  worker-grisli:
    build: 
        context: ./gennifer/grisli
        dockerfile: Dockerfile
    restart: always
    command: celery --app grisli.tasks.celery worker -Q grisli --loglevel=info
    environment:
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
        - PYTHONUNBUFFERED=1
    depends_on:
        - grisli
        - redis

  genie3:
    build:
        context: ./gennifer/genie3
        dockerfile: Dockerfile
    restart: always
    user: gennifer_user
    ports:
        - 5006:5000
    secrets:
        - gennifer_key
    environment:
        - SECRET_KEY_FILE=/run/secrets/gennifer_key
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
    command: gunicorn -c gunicorn.config.py -b 0.0.0.0:5000 'genie3:create_app()'
    #command: flask --app genie3 run --debug --host 0.0.0.0
    depends_on:
        - redis

  worker-genie3:
    build:
        context: ./gennifer/genie3
        dockerfile: Dockerfile
    restart: always
    command: celery --app genie3.tasks.celery worker -Q genie3 --loglevel=info
    environment:
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
    depends_on:
        - genie3
        - redis

  grnboost2:
    build:
        context: ./gennifer/grnboost2
        dockerfile: Dockerfile
    restart: always
    user: gennifer_user
    ports:
        - 5007:5000
    secrets:
        - gennifer_key
    environment:
        - SECRET_KEY_FILE=/run/secrets/gennifer_key
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
    command: gunicorn -c gunicorn.config.py -b 0.0.0.0:5000 'grnboost2:create_app()'
    #command: flask --app grnboost2 run --debug --host 0.0.0.0
    depends_on:
        - redis

  worker-grnboost2:
    build:
        context: ./gennifer/grnboost2
        dockerfile: Dockerfile
    restart: always
    command: celery --app grnboost2.tasks.celery worker -Q grnboost2 --loglevel=info
    environment:
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
    depends_on:
        - grnboost2
        - redis

  bkb-grn:
    build:
        context: ./gennifer/bkb-grn
        dockerfile: Dockerfile
    restart: always
    user: gennifer_user
    ports:
        - 5008:5000
    secrets:
        - gennifer_key
    environment:
        - PYTHONUNBUFFERED=1
        - SECRET_KEY_FILE=/run/secrets/gennifer_key
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
    command: gunicorn -c gunicorn.config.py -b 0.0.0.0:5000 'bkb_grn:create_app()'
    #command: flask --app bkb_grn run --debug --host 0.0.0.0
    depends_on:
        - redis

  worker-bkb-grn:
    build:
        context: ./gennifer/bkb-grn
        dockerfile: Dockerfile
    restart: always
    secrets:
        - gurobi_lic
    command: celery --app bkb_grn.tasks.celery worker -Q bkb_grn --loglevel=info
    environment:
        - PYTHONUNBUFFERED=1
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
        - GRB_LICENSE_FILE=/run/secrets/gurobi_lic
    depends_on:
        - bkb-grn
        - redis
  
  annotator:
    build:
        context: ./gennifer/annotator
        dockerfile: Dockerfile
    restart: always
    user: gennifer_user
    ports:
        - 5009:5000
    secrets:
        - gennifer_key
        - openai_api_key
    environment:
        - SECRET_KEY_FILE=/run/secrets/gennifer_key
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
        - OPENAI_API_KEY_FILE=/run/secrets/openai_api_key
    command: gunicorn -c gunicorn.config.py -b 0.0.0.0:5000 'annotator:create_app()'
    #command: flask --app annotator run --debug --host 0.0.0.0
    depends_on:
        - redis

  worker-annotator:
    build:
        context: ./gennifer/annotator
        dockerfile: Dockerfile
    command: celery --app annotator.tasks.celery worker -Q annotation --loglevel=info
    secrets:
        - openai_api_key
    environment:
        - CELERY_BROKER_URL=redis://redis:6379/0
        - CELERY_RESULT_BACKEND=redis://redis:6379/0
        - OPENAI_API_KEY_FILE=/run/secrets/openai_api_key
    depends_on:
        - annotator
        - redis

secrets:
  gennifer_key:
    file: secrets/gennifer/secret_key.txt
  gurobi_lic:
    file: secrets/gennifer/gurobi.lic
  openai_api_key:
    file: secrets/gennifer/openai_api_key.txt