deployment-script

#!/bin/bash

# Variables
django_superuser_username='cat secrets/chp_api/django_superuser_username.txt'
django_superuser_email='cat secrets/chp_api/django_superuser_email.txt'

# Only to be run when building on dev machine
docker compose -f compose.chp-api.yaml -f compose.gennifer.yaml up -d --build --remove-orphans   

docker compose -f compose.chp-api.yaml run api python3 manage.py migrate

# Create a database superuser
docker compose -f compose.chp-api.yaml run --user root api python3 manage.py createsuperuser --no-input #--username $django_superuser_username --email $django_superuser_email

# Load apps
docker compose -f compose.chp-api.yaml run api python3 manage.py runscript load_db_apps
docker compose -f compose.chp-api.yaml run api python3 manage.py runscript templater
docker compose -f compose.chp-api.yaml run api python3 manage.py runscript gene_spec_curie_templater
docker compose -f compose.chp-api.yaml run api python3 manage.py runscript algorithm_loader

docker compose -f compose.chp-api.yaml run --user root api python3 manage.py collectstatic --noinput

echo "Check logs with: docker compose -f compose.chp-api.yaml -f compose.gennifer.yaml logs -f"