faq.html

---
layout: base
---
<div itemscope itemtype="https://schema.org/FAQPage">
{% assign contributors = site.data['contributors'] %}
<section class="tutorial" itemscope itemprop="mainEntity" itemtype="https://schema.org/Question">

  <nav aria-label="breadcrumb">
    <ol class="breadcrumb">
      <li class="breadcrumb-item"><a href="{{site.baseurl}}/faqs">All FAQs</a></li>

      {% if page.url contains '/faqs/gtn/' %}
      <li class="breadcrumb-item"><a href="{{site.baseurl}}/faqs/gtn/">GTN FAQs</a></li>
      {% else %}

      <li class="breadcrumb-item"><a href="{{site.baseurl}}/faqs/galaxy/">Galaxy FAQs</a></li>

      {% if page.url contains 'topic' %}
        {% if page.url contains 'tutorial' %}  <!-- tutorial FAQ file -->

          {% assign t = page.url | split: '/tutorials/' %}
          {% assign top = t[0] | append: "/faqs" %}
          <li class="breadcrumb-item"><a href="{{site.baseurl}}{{top}}">Topic FAQs</a></li>
          <li class="breadcrumb-item" aria-current="page"><a href="{{site.baseurl}}{{page.dir}}">Tutorial FAQs</a></li>

         {% else %}  <!-- topic-level FAQ file -->

          {% assign t = page.url | split: '/faqs/' %}
          {% assign top = t[0] | append: "/faqs" %}
          <li class="breadcrumb-item"><a href="{{site.baseurl}}{{top}}">Topic FAQs</a></li>

         {% endif %}
        {% endif %}
      {% endif %}

      <li class="breadcrumb-item active" aria-current="page">FAQ</li>

    </ol>
  </nav>
  <h1 itemprop="name">{{page.title}}</h1>

    {% if page.contributors %}
    <div class="contributors-line" style="font-size:1rem;">{{ locale['authors'] | default: "Authors" }}: {% include
        _includes/contributor-list.html
        contributors=page.contributors badge=true newcontributors=true %}</div>
    <hr>
    {% endif %}

    <div class="container">
      <div class="row" itemscope itemprop="acceptedAnswer" itemtype="https://schema.org/Answer">
        <div class="col-md-8" itemprop="text">
           {{ page.description }}


           {{ content | fix_box_titles:page.lang,page.path | regex_replace: '<hr.*—<\/p>', '' }}

        </div>
        <div class="col-md-4">
	  {% if page.short_id %}
          <h5>Persistent URL</h5>
	  Resource {% icon purl %}<abbr title="Persistent URL">PURL</abbr>: <a class="badge badge-info" href="https://gxy.io/GTN:{{ page.short_id }}">https://gxy.io/GTN:{{ page.short_id }}</a>
	  {% endif %}

          <h5>Still have questions?</h5>

          {% include _includes/button.html link="https://gitter.im/Galaxy-Training-Network/Lobby" label="Gitter Chat Support" colour="yellow" buttonsize="medium" %}

          {% include _includes/button.html link="https://help.galaxyproject.org" label="Galaxy Help Forum" colour="purple" buttonsize="medium" %}


		<!-- Button trigger modal -->
		<button type="button" class="btn btn-secondary" data-toggle="modal" data-target="#gtnInfoModal">
		  Information for GTN Tutorial Authors
		</button>

        </div>
      </div>
    </div>

    {% if page.cited %}
    <h2 id="bibliography">{{locale['references']| default: "References" }}</h2>
    {% bibliography --cited %}
    {% endif %}

</section>
</div>



<!-- Modal -->
<div class="modal" id="gtnInfoModal" tabindex="-1" role="dialog" aria-labelledby="gtnInfoModalLabel" aria-hidden="true">
  <div class="modal-dialog modal-lg" role="document">
    <div class="modal-content">
      <div class="modal-header">
        <h5 class="modal-title" id="gtnInfoModalLabel">Details For GTN Tutorial Authors</h5>
        <button type="button" class="close" data-dismiss="modal" aria-label="Close">
          <span aria-hidden="true">&times;</span>
        </button>
      </div>
      <div class="modal-body">

	   <h5>Want to embed this snippet (FAQ) in your GTN Tutorial?</h5>
<div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code>{% raw %}{% snippet  {% endraw %}{{ page.path }}{% raw %} %}{% endraw %}
</code></pre></div></div>

	  {% if page.required_parameters %}
	  <h5>Mandatory Parameters</h5>
	  <ul>
	  {% for parameter in page.required_parameters %}
	  <li><code>{{ parameter[0] }}</code>: {{ parameter[1] }}</li>
	  {% endfor %}
	  </ul>
	  {% endif %}

	  {% if page.optional_parameters %}
	  <h5>Optional Parameters</h5>
	  <ul>
	  {% for parameter in page.optional_parameters %}
	  <li><code>{{ parameter[0] }}</code>: {{ parameter[1] }}</li>
	  {% endfor %}
	  </ul>
	  {% endif %}

{% if page.examples %}
<h5>Examples</h5>
{% for case in page.examples %}
{{ case[0] }}:
<div class="language-markdown highlighter-rouge"><div class="highlight"><pre class="highlight"><code>{% raw %}{% snippet {% endraw %}{{ page.path }} {% for pair in case[1] %}{{ pair[0] }}="{{ pair[1] }}" {% endfor %} {% raw %}%}{% endraw %}
</code></pre></div></div>
{% endfor %}
{% endif %}

<h5>See other uses</h5>
<a href="https://github.com/search?q=repo%3Agalaxyproject%2Ftraining-material+{{ page.path }}&type=code">Search on GitHub (must be logged in)</a>

      </div>
      <div class="modal-footer">
        <button type="button" class="btn btn-primary" data-dismiss="modal">Close</button>
      </div>
    </div>
  </div>
</div>