From f5c27a9b37d584b16bd7d4182d334e8bfcc7e8f5 Mon Sep 17 00:00:00 2001 From: "C. Titus Brown" Date: Sun, 4 Dec 2022 05:39:57 -0800 Subject: [PATCH] update sourmash and screed versions (#251) --- genome_grist/conf/env/papermill.yml | 2 +- genome_grist/conf/env/sourmash.yml | 4 ++-- setup.cfg | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/genome_grist/conf/env/papermill.yml b/genome_grist/conf/env/papermill.yml index 1f344ea..fa1af7a 100644 --- a/genome_grist/conf/env/papermill.yml +++ b/genome_grist/conf/env/papermill.yml @@ -10,5 +10,5 @@ dependencies: - matplotlib>=3.4.3,<4 - numpy>=1.21.3,<2 - pandas>=1.3.4,<2 - - sourmash>=4.5.0,<4.6 + - sourmash>=4.6.1,<5 - python>=3.8,<3.10 diff --git a/genome_grist/conf/env/sourmash.yml b/genome_grist/conf/env/sourmash.yml index a7fa396..4fb32bc 100755 --- a/genome_grist/conf/env/sourmash.yml +++ b/genome_grist/conf/env/sourmash.yml @@ -4,8 +4,8 @@ channels: - defaults dependencies: - python>=3.8,<3.10 - - screed - - sourmash>=4.5.0,<4.6 + - screed>=1.1,<2 + - sourmash>=4.6.1,<5 - pip - pip: - git+https://github.com/dib-lab/genome-grist.git#egg=genome-grist diff --git a/setup.cfg b/setup.cfg index 2925963..337e2a6 100644 --- a/setup.cfg +++ b/setup.cfg @@ -9,4 +9,4 @@ test = pytest>=5.1.2,<7.3.0 pytest-cov pytest-dependency - sourmash>=4.5.0,<4.6.0 + sourmash>=4.6.1,<5