diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index b6f2de7..b2bfa8a 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -7,31 +7,26 @@ jobs: test: runs-on: ubuntu-latest services: - postgres: - image: postgres:9.6.6-alpine + arangodb: + image: arangodb:3.10.9 env: - POSTGRES_DB: pgtest - POSTGRES_USER: pguser - POSTGRES_PASSWORD: pgdocker + ARANGO_ROOT_PASSWORD: rootpass ports: - - 5432/tcp + - 8529/tcp steps: - name: set up golang uses: actions/setup-go@v4 with: go-version: '~1.20.6' - name: check out code - uses: actions/checkout@v4 + uses: actions/checkout@v3 - name: unit test - run: go test -covermode=atomic -coverprofile=profile.cov -v ./... + run: go test -parallel 4 -covermode=atomic -coverprofile=profile.cov -v ./... env: - POSTGRES_DB: pgtest - POSTGRES_USER: pguser - POSTGRES_PASSWORD: pgdocker - POSTGRES_HOST: localhost - POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} - NATS_HOST: localhost - NATS_PORT: ${{ job.services.nats.ports[4222] }} + ARANGO_USER: root + ARANGO_PASS: rootpass + ARANGO_HOST: localhost + ARANGO_PORT: ${{ job.services.arangodb.ports[8529] }} GOPROXY: https://proxy.golang.org - name: upload coverage to codecov uses: codecov/codecov-action@v3 diff --git a/.github/workflows/testcov.yml b/.github/workflows/testcov.yml index a59f607..18c8eab 100644 --- a/.github/workflows/testcov.yml +++ b/.github/workflows/testcov.yml @@ -4,31 +4,26 @@ jobs: test: runs-on: ubuntu-latest services: - postgres: - image: postgres:9.6.6-alpine + arangodb: + image: arangodb:3.10.9 env: - POSTGRES_DB: pgtest - POSTGRES_USER: pguser - POSTGRES_PASSWORD: pgdocker + ARANGO_ROOT_PASSWORD: rootpass ports: - - 5432/tcp + - 8529/tcp steps: - name: set up golang uses: actions/setup-go@v4 with: go-version: '~1.20.6' - name: check out code - uses: actions/checkout@v4 + uses: actions/checkout@v3 - name: unit test - run: go test -covermode=atomic -coverprofile=profile.cov -v ./... + run: go test -parallel 4 -covermode=atomic -coverprofile=profile.cov -v ./... env: - POSTGRES_DB: pgtest - POSTGRES_USER: pguser - POSTGRES_PASSWORD: pgdocker - POSTGRES_HOST: localhost - POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} - NATS_HOST: localhost - NATS_PORT: ${{ job.services.nats.ports[4222] }} + ARANGO_USER: root + ARANGO_PASS: rootpass + ARANGO_HOST: localhost + ARANGO_PORT: ${{ job.services.arangodb.ports[8529] }} GOPROXY: https://proxy.golang.org - name: upload coverage to codecov uses: codecov/codecov-action@v3 diff --git a/.gitignore b/.gitignore index 01b674f..48b8bf9 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1 @@ vendor/ -modware-content diff --git a/.golangci.yml b/.golangci.yml index 4c19f62..3291f59 100644 --- a/.golangci.yml +++ b/.golangci.yml @@ -4,9 +4,6 @@ run: linters-settings: funlen: lines: 80 - statements: 50 - lll: - line-length: 130 revive: rules: - name: var-naming @@ -14,6 +11,7 @@ linters-settings: gosec: excludes: - G404 + - G402 wrapcheck: ignoreSigs: - .HandleMessagingError( @@ -36,57 +34,31 @@ linters: - bodyclose - bidichk - cyclop - - decorder - depguard + - decorder - dogsled - - dupl + # - dupl - errcheck - - errname - funlen - - gci - - gochecknoinits - goconst - gocritic - gocyclo - - godot - gofmt - goimports - gosec - gosimple - govet - - gocognit - - gomnd - - gomoddirectives - - gomodguard - - grouper - ineffassign - - importas - lll - - maintidx - misspell - nakedret - - nestif - - nilerr - - nlreturn - - nolintlint - - prealloc - # - paralleltest - - predeclared - revive - - rowserrcheck - staticcheck - typecheck - unconvert - - thelper - - tparallel - unparam - unused - - unconvert - - unparam - - varnamelen - - wastedassign - whitespace - - wrapcheck # don't enable: # - godox diff --git a/README.md b/README.md index d95dd78..39eca4c 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,4 @@ # modware-user - -[![All Contributors](https://img.shields.io/badge/all_contributors-2-orange.svg?style=flat-square)](#contributors-) - - [![License](https://img.shields.io/badge/License-BSD%202--Clause-blue.svg)](LICENSE) ![Continuous integration](https://github.com/dictyBase/modware-content/workflows/Continuous%20integration/badge.svg) [![codecov](https://codecov.io/gh/dictyBase/modware-content/branch/develop/graph/badge.svg)](https://codecov.io/gh/dictyBase/modware-content) @@ -68,22 +64,3 @@ The protocol buffer definitions and service apis are documented ![GitHub code size in bytes](https://img.shields.io/github/languages/code-size/dictyBase/modware-content?style=plastic) [![Lines of Code](https://badgen.net/codeclimate/loc/dictyBase/modware-content)](https://codeclimate.com/github/dictyBase/modware-content/code) -## Contributors ✨ - -Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/docs/en/emoji-key)): - - - - - - - - - -

Siddhartha Basu
🐛 💻 🖋 📖 🚧
Eric Hartline
🐛 💻 🖋 📖 🚧
- - - - - -This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind welcome! \ No newline at end of file diff --git a/build/package/Dockerfile b/build/package/Dockerfile index e43aa2a..f809d19 100644 --- a/build/package/Dockerfile +++ b/build/package/Dockerfile @@ -12,10 +12,8 @@ COPY go.mod ./ COPY go.sum ./ COPY main.go ./ RUN go mod download -ADD server server -ADD commands commands -ADD message message -ADD validate validate +ADD cmd cmd +ADD internal internal RUN go build \ -a \ -ldflags "-s -w -extldflags '-static'" \ diff --git a/cmd/modware-content/main.go b/cmd/modware-content/main.go new file mode 100644 index 0000000..9c24ad7 --- /dev/null +++ b/cmd/modware-content/main.go @@ -0,0 +1,65 @@ +package main + +import ( + "log" + "os" + + apiflag "github.com/dictyBase/aphgrpc" + arangoflag "github.com/dictyBase/arangomanager/command/flag" + "github.com/dictyBase/modware-content/internal/app/server" + "github.com/urfave/cli" +) + +func main() { + app := cli.NewApp() + app.Name = "modware-content" + app.Usage = "cli for modware-content microservice" + app.Version = "2.0.0" + app.Flags = []cli.Flag{ + cli.StringFlag{ + Name: "log-format", + Usage: "format of the logging out, either of json or text.", + Value: "json", + }, + cli.StringFlag{ + Name: "log-level", + Usage: "log level for the application", + Value: "error", + }, + } + app.Commands = []cli.Command{ + { + Name: "start-server", + Usage: "starts the modware-content microservice with HTTP and grpc backends", + Action: server.RunServer, + Flags: getServerFlags(), + }, + } + if err := app.Run(os.Args); err != nil { + log.Fatalf("error in running command %s", err) + } +} + +func getServerFlags() []cli.Flag { + flg := []cli.Flag{ + cli.StringFlag{ + Name: "port", + Usage: "tcp port at which the server will be available", + Value: "9560", + }, + cli.StringFlag{ + Name: "content-collection", + Usage: "arangodb collection for storing editor data", + Value: "serialized_json", + }, + cli.StringFlag{ + Name: "arangodb-database, db", + EnvVar: "ARANGODB_DATABASE", + Usage: "arangodb database name", + Value: "content", + }, + } + flg = append(flg, arangoflag.ArangoFlags()...) + + return append(flg, apiflag.NatsFlag()...) +} diff --git a/commands/server.go b/commands/server.go deleted file mode 100644 index 6e03097..0000000 --- a/commands/server.go +++ /dev/null @@ -1,271 +0,0 @@ -package commands - -import ( - "context" - "database/sql" - "fmt" - "log" - "net" - "net/http" - "os" - "time" - - "github.com/dictyBase/apihelpers/aphgrpc" - pb "github.com/dictyBase/go-genproto/dictybaseapis/content" - "github.com/dictyBase/modware-content/message/nats" - "github.com/dictyBase/modware-content/server" - "github.com/go-chi/cors" - grpc_logrus "github.com/grpc-ecosystem/go-grpc-middleware/logging/logrus" - grpc_ctxtags "github.com/grpc-ecosystem/go-grpc-middleware/tags" - "github.com/grpc-ecosystem/grpc-gateway/runtime" - _ "github.com/jackc/pgx/stdlib" - "github.com/sirupsen/logrus" - "github.com/soheilhy/cmux" - "github.com/urfave/cli" - "google.golang.org/grpc" - "google.golang.org/grpc/credentials/insecure" - "google.golang.org/grpc/reflection" - dat "gopkg.in/mgutz/dat.v2/dat" - runner "gopkg.in/mgutz/dat.v2/sqlx-runner" -) - -const ExitError = 2 -const Timeout = 10 - -func startServers( - grpcS *grpc.Server, - httpMux *runtime.ServeMux, - cmlis cmux.CMux, - lis net.Listener, - grpcL net.Listener, - httpL net.Listener, -) error { - cors := cors.New(cors.Options{ - AllowedOrigins: []string{"*"}, - AllowCredentials: true, - AllowedMethods: []string{ - "GET", - "POST", - "PUT", - "DELETE", - "OPTIONS", - "PATCH", - }, - OptionsPassthrough: false, - AllowedHeaders: []string{"*"}, - }) - httpS := &http.Server{ - Handler: cors.Handler(httpMux), - ReadHeaderTimeout: time.Duration(Timeout) * time.Second, - } - ech := make(chan error, ExitError) - go func() { ech <- grpcS.Serve(grpcL) }() - go func() { ech <- httpS.Serve(httpL) }() - log.Printf("starting multiplexed server on %s", lis.Addr()) - var failed bool - if err := cmlis.Serve(); err != nil { - log.Printf("cmux server error: %v", err) - failed = true - } - icount := 0 - for err := range ech { - if err != nil { - log.Printf("protocol serve error:%v", err) - failed = true - } - icount++ - if cap(ech) == icount { - close(ech) - - break - } - } - if failed { - return fmt.Errorf("error in running cmux server") - } - - return nil -} - -func createListener(c *cli.Context) (net.Listener, error) { - endP := fmt.Sprintf(":%s", c.String("port")) - lis, err := net.Listen("tcp", endP) - if err != nil { - return lis, fmt.Errorf("error creating Listener %s", err) - } - - return lis, nil -} - -func createCMux(lis net.Listener) (cmux.CMux, net.Listener, net.Listener) { - cmlis := cmux.New(lis) - grpcL := cmlis.MatchWithWriters( - cmux.HTTP2MatchHeaderFieldSendSettings( - "content-type", - "application/grpc", - ), - ) - httpL := cmlis.Match(cmux.Any()) - - return cmlis, grpcL, httpL -} - -func registerHTTPHandler(c *cli.Context, httpMux *runtime.ServeMux) error { - opts := []grpc.DialOption{ - grpc.WithTransportCredentials(insecure.NewCredentials()), - } - endP := fmt.Sprintf(":%s", c.String("port")) - err := pb.RegisterContentServiceHandlerFromEndpoint( - context.Background(), - httpMux, - endP, - opts, - ) - - if err != nil { - return fmt.Errorf("error in registering http handler %s", err) - } - - return nil -} - -func createHTTPServeMux() *runtime.ServeMux { - runtime.HTTPError = aphgrpc.CustomHTTPError - httpMux := runtime.NewServeMux( - runtime.WithForwardResponseOption(aphgrpc.HandleCreateResponse), - ) - - return httpMux -} - -func createGRPCServer(c *cli.Context) *grpc.Server { - return grpc.NewServer( - grpc.ChainUnaryInterceptor( - grpc_ctxtags.UnaryServerInterceptor(), - grpc_logrus.UnaryServerInterceptor(getLogger(c)), - ), - ) -} - -func RunServer(clt *cli.Context) error { - dat.EnableInterpolation = true - dbh, err := getPgWrapper(clt) - if err != nil { - return cli.NewExitError( - fmt.Sprintf("Unable to create database connection %s", err.Error()), - ExitError, - ) - } - nrs, err := nats.NewRequest( - clt.String("nats-host"), - clt.String("nats-port"), - ) - if err != nil { - return cli.NewExitError( - fmt.Sprintf("cannot connect to messaging server %s", err.Error()), - ExitError, - ) - } - grpcS := createGRPCServer(clt) - pb.RegisterContentServiceServer( - grpcS, - server.NewContentService( - dbh, - nrs, - aphgrpc.BaseURLOption(setAPIHost(clt)), - )) - reflection.Register(grpcS) - httpMux := createHTTPServeMux() - if err := registerHTTPHandler(clt, httpMux); err != nil { - return cli.NewExitError( - fmt.Sprintf( - "unable to register http endpoint for content microservice %s", - err, - ), - ExitError, - ) - } - - lis, err := createListener(clt) - if err != nil { - return cli.NewExitError( - fmt.Sprintf("failed to listen %s", err), - ExitError, - ) - } - cmlis, grpcL, httpL := createCMux(lis) - err = startServers(grpcS, httpMux, cmlis, lis, grpcL, httpL) - if err != nil { - return cli.NewExitError( - fmt.Sprintf("error in starting servers %s", err), - ExitError, - ) - } - - return nil -} - -func setAPIHost(c *cli.Context) string { - if len(c.String("content-api-http-host")) > 0 { - return c.String("content-api-http-host") - } - - return fmt.Sprintf("http://localhost:%s", c.String("port")) -} - -func getPgxDbHandler(cltx *cli.Context) (*sql.DB, error) { - cStr := fmt.Sprintf("postgres://%s:%s@%s:%s/%s?sslmode=disable", - cltx.String("dictycontent-user"), - cltx.String("dictycontent-pass"), - cltx.String("dictycontent-host"), - cltx.String("dictycontent-port"), - cltx.String("dictycontent-db"), - ) - - dbh, err := sql.Open("pgx", cStr) - if err != nil { - return &sql.DB{}, fmt.Errorf("error in opening database %s", err) - } - - return dbh, nil -} - -func getPgWrapper(c *cli.Context) (*runner.DB, error) { - var dbh *runner.DB - h, err := getPgxDbHandler(c) - if err != nil { - return dbh, err - } - - return runner.NewDB(h, "postgres"), nil -} - -func getLogger(cltx *cli.Context) *logrus.Entry { - log := logrus.New() - log.Out = os.Stderr - switch cltx.GlobalString("log-format") { - case "text": - log.Formatter = &logrus.TextFormatter{ - TimestampFormat: "0ExitError/Jan/2006:15:04:05", - } - case "json": - log.Formatter = &logrus.JSONFormatter{ - TimestampFormat: "0ExitError/Jan/2006:15:04:05", - } - } - l := cltx.GlobalString("log-level") - switch l { - case "debug": - log.Level = logrus.DebugLevel - case "warn": - log.Level = logrus.WarnLevel - case "error": - log.Level = logrus.ErrorLevel - case "fatal": - log.Level = logrus.FatalLevel - case "panic": - log.Level = logrus.PanicLevel - } - - return logrus.NewEntry(log) -} diff --git a/go.mod b/go.mod index badc516..892114e 100644 --- a/go.mod +++ b/go.mod @@ -1,46 +1,44 @@ module github.com/dictyBase/modware-content require ( - github.com/cenkalti/backoff v1.1.0 // indirect - github.com/cockroachdb/apd v1.1.0 // indirect - github.com/dictyBase/apihelpers v0.0.0-20180407012836-a3b4e4c94490 - github.com/dictyBase/go-genproto v0.0.0-20180501011042-c875deaa60d6 - github.com/dictyBase/modware-identity v0.0.0-20180408114222-99ac1fec3e82 - github.com/fatih/structs v1.0.0 // indirect - github.com/garyburd/redigo v1.4.0 // indirect - github.com/go-chi/cors v1.2.1 - github.com/go-sql-driver/mysql v1.5.0 // indirect - github.com/gofrs/uuid v3.2.0+incompatible // indirect + github.com/arangodb/go-driver v1.6.0 + github.com/dictyBase/aphgrpc v1.4.2 + github.com/dictyBase/arangomanager v0.4.0 + github.com/dictyBase/go-genproto v0.0.0-20231030202356-522cb6f9976a + github.com/go-playground/validator/v10 v10.15.5 github.com/golang/protobuf v1.5.3 github.com/grpc-ecosystem/go-grpc-middleware v1.4.0 - github.com/grpc-ecosystem/grpc-gateway v1.16.0 - github.com/jackc/fake v0.0.0-20150926172116-812a484cc733 // indirect - github.com/jackc/pgx v3.6.2+incompatible - github.com/jmoiron/sqlx v0.0.0-20180124204410-05cef0741ade // indirect - github.com/lib/pq v0.0.0-20180123210206-19c8e9ad0095 // indirect - github.com/mattn/go-colorable v0.0.9 // indirect - github.com/mattn/go-sqlite3 v2.0.3+incompatible // indirect - github.com/mgutz/ansi v0.0.0-20170206155736-9520e82c474b // indirect - github.com/mgutz/jo v1.1.0 // indirect - github.com/mgutz/logxi v0.0.0-20161027140823-aebf8a7d67ab // indirect - github.com/mgutz/str v1.2.0 // indirect - github.com/mgutz/to v1.0.0 // indirect - github.com/mwitkow/go-proto-validators v0.0.0-20170220212302-a55ca57f374a // indirect - github.com/nats-io/gnatsd v1.4.1 // indirect - github.com/nats-io/go-nats v1.7.2 - github.com/nats-io/nkeys v0.1.3 // indirect - github.com/nats-io/nuid v1.0.0 // indirect - github.com/pmylund/go-cache v2.1.0+incompatible // indirect - github.com/pressly/goose v2.7.0+incompatible - github.com/satori/go.uuid v1.2.0 // indirect - github.com/shopspring/decimal v0.0.0-20200105231215-408a2507e114 // indirect + github.com/nats-io/nats.go v1.31.0 github.com/sirupsen/logrus v1.9.3 - github.com/soheilhy/cmux v0.1.5 + github.com/stretchr/testify v1.8.4 github.com/urfave/cli v1.22.14 google.golang.org/grpc v1.59.0 - gopkg.in/mgutz/dat.v2 v2.0.0-20171004160617-d76e4f81c4ef - gopkg.in/src-d/go-git.v4 v4.13.1 - gopkg.in/stretchr/testify.v1 v1.2.2 // indirect ) -go 1.13 +require ( + github.com/arangodb/go-velocypack v0.0.0-20200318135517-5af53c29c67e // indirect + github.com/cpuguy83/go-md2man/v2 v2.0.3 // indirect + github.com/davecgh/go-spew v1.1.1 // indirect + github.com/fatih/structs v1.1.0 // indirect + github.com/gabriel-vasile/mimetype v1.4.2 // indirect + github.com/go-playground/locales v0.14.1 // indirect + github.com/go-playground/universal-translator v0.18.1 // indirect + github.com/gogo/protobuf v1.3.2 // indirect + github.com/klauspost/compress v1.17.0 // indirect + github.com/leodido/go-urn v1.2.4 // indirect + github.com/mwitkow/go-proto-validators v0.2.0 // indirect + github.com/nats-io/nkeys v0.4.5 // indirect + github.com/nats-io/nuid v1.0.1 // indirect + github.com/pkg/errors v0.9.1 // indirect + github.com/pmezard/go-difflib v1.0.0 // indirect + github.com/russross/blackfriday/v2 v2.1.0 // indirect + golang.org/x/crypto v0.14.0 // indirect + golang.org/x/net v0.17.0 // indirect + golang.org/x/sys v0.13.0 // indirect + golang.org/x/text v0.13.0 // indirect + google.golang.org/genproto/googleapis/rpc v0.0.0-20231030173426-d783a09b4405 // indirect + google.golang.org/protobuf v1.31.0 // indirect + gopkg.in/yaml.v3 v3.0.1 // indirect +) + +go 1.20 diff --git a/go.sum b/go.sum index d20cc23..01b5ece 100644 --- a/go.sum +++ b/go.sum @@ -1,910 +1,64 @@ cloud.google.com/go v0.26.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw= -cloud.google.com/go v0.34.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw= -cloud.google.com/go v0.38.0/go.mod h1:990N+gfupTy94rShfmMCWGDn0LpTmnzTp2qbd1dvSRU= -cloud.google.com/go v0.44.1/go.mod h1:iSa0KzasP4Uvy3f1mN/7PiObzGgflwredwwASm/v6AU= -cloud.google.com/go v0.44.2/go.mod h1:60680Gw3Yr4ikxnPRS/oxxkBccT6SA1yMk63TGekxKY= 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"github.com/dictyBase/arangomanager" + "github.com/dictyBase/go-genproto/dictybaseapis/content" + "github.com/dictyBase/modware-content/internal/app/service" + "github.com/dictyBase/modware-content/internal/message" + "github.com/dictyBase/modware-content/internal/message/nats" + "github.com/dictyBase/modware-content/internal/repository" + "github.com/dictyBase/modware-content/internal/repository/arangodb" + grpc_logrus "github.com/grpc-ecosystem/go-grpc-middleware/logging/logrus" + grpc_ctxtags "github.com/grpc-ecosystem/go-grpc-middleware/tags" + gnats "github.com/nats-io/nats.go" + "github.com/sirupsen/logrus" + "github.com/urfave/cli" + "google.golang.org/grpc" + "google.golang.org/grpc/reflection" +) + +const ExitError = 2 +const Timeout = 10 + +type serverParams struct { + repo repository.ContentRepository + msg message.Publisher +} + +func RunServer(clt *cli.Context) error { + spn, err := repoAndNatsConn(clt) + if err != nil { + return cli.NewExitError(err.Error(), ExitError) + } + grpcS := grpc.NewServer( + grpc.ChainUnaryInterceptor( + grpc_ctxtags.UnaryServerInterceptor(), + grpc_logrus.UnaryServerInterceptor(getLogger(clt)), + ), + ) + srv, err := service.NewContentService( + &service.Params{ + Repository: spn.repo, + Publisher: spn.msg, + Group: "groups", + Options: getGrpcOpt(), + }) + if err != nil { + return cli.NewExitError(err.Error(), ExitError) + } + content.RegisterContentServiceServer(grpcS, srv) + reflection.Register(grpcS) + // create listener + endP := fmt.Sprintf(":%s", clt.String("port")) + lis, err := net.Listen("tcp", endP) + if err != nil { + return cli.NewExitError( + fmt.Sprintf("failed to listen %s", err), ExitError, + ) + } + log.Printf("starting grpc server on %s", endP) + if err := grpcS.Serve(lis); err != nil { + return cli.NewExitError(err.Error(), ExitError) + } + + return nil +} + +func getLogger(cltx *cli.Context) *logrus.Entry { + log := logrus.New() + log.Out = os.Stderr + switch cltx.GlobalString("log-format") { + case "text": + log.Formatter = &logrus.TextFormatter{ + TimestampFormat: "02/Jan/2006:15:04:05", + } + case "json": + log.Formatter = &logrus.JSONFormatter{ + TimestampFormat: "02/Jan/2006:15:04:05", + } + } + l := cltx.GlobalString("log-level") + switch l { + case "debug": + log.Level = logrus.DebugLevel + case "warn": + log.Level = logrus.WarnLevel + case "error": + log.Level = logrus.ErrorLevel + case "fatal": + log.Level = logrus.FatalLevel + case "panic": + log.Level = logrus.PanicLevel + } + + return logrus.NewEntry(log) +} + +func allParams( + clt *cli.Context, +) *manager.ConnectParams { + arPort, _ := strconv.Atoi(clt.String("arangodb-port")) + + return &manager.ConnectParams{ + User: clt.String("arangodb-user"), + Pass: clt.String("arangodb-pass"), + Database: clt.String("arangodb-database"), + Host: clt.String("arangodb-host"), + Port: arPort, + Istls: clt.Bool("is-secure"), + } +} + +func getGrpcOpt() []aphgrpc.Option { + return []aphgrpc.Option{ + aphgrpc.TopicsOption(map[string]string{ + "contentCreate": "ContentService.Create", + "contentDelete": "ContentService.Delete", + "contentUpdate": "ContentService.Update", + }), + } +} + +func repoAndNatsConn(clt *cli.Context) (*serverParams, error) { + anrepo, err := arangodb.NewContentRepo( + allParams(clt), + clt.String("content-collection"), + ) + if err != nil { + return &serverParams{}, + fmt.Errorf( + "cannot connect to arangodb annotation repository %s", + err, + ) + } + msp, err := nats.NewPublisher( + clt.String("nats-host"), clt.String("nats-port"), + gnats.MaxReconnects(-1), gnats.ReconnectWait(Timeout*time.Second), + ) + if err != nil { + return &serverParams{}, + fmt.Errorf("cannot connect to messaging server %s", err) + } + + return &serverParams{ + repo: anrepo, + msg: msp, + }, nil +} diff --git a/internal/app/service/service.go b/internal/app/service/service.go new file mode 100644 index 0000000..e847a7c --- /dev/null +++ b/internal/app/service/service.go @@ -0,0 +1,183 @@ +package service + +import ( + "context" + "fmt" + "strconv" + + "github.com/dictyBase/aphgrpc" + "github.com/dictyBase/go-genproto/dictybaseapis/api/jsonapi" + "github.com/dictyBase/go-genproto/dictybaseapis/content" + "github.com/dictyBase/modware-content/internal/message" + "github.com/dictyBase/modware-content/internal/model" + "github.com/dictyBase/modware-content/internal/repository" + "github.com/go-playground/validator/v10" + "github.com/golang/protobuf/ptypes/empty" +) + +func defaultOptions() *aphgrpc.ServiceOptions { + return &aphgrpc.ServiceOptions{ + Resource: "contents", + } +} + +type ContentService struct { + *aphgrpc.Service + repo repository.ContentRepository + publisher message.Publisher + group string + content.UnimplementedContentServiceServer +} + +// ServiceParams are the attributes that are required for creating new ContentService. +type Params struct { + Repository repository.ContentRepository `validate:"required"` + Publisher message.Publisher `validate:"required"` + Options []aphgrpc.Option `validate:"required"` + Group string `validate:"required"` +} + +func NewContentService(srvP *Params) (*ContentService, error) { + if err := validator.New().Struct(srvP); err != nil { + return &ContentService{}, fmt.Errorf( + "error in validating struct %s", + err, + ) + } + so := defaultOptions() + for _, optfn := range srvP.Options { + optfn(so) + } + srv := &aphgrpc.Service{} + aphgrpc.AssignFieldsToStructs(so, srv) + + return &ContentService{ + Service: srv, + repo: srvP.Repository, + publisher: srvP.Publisher, + group: srvP.Group, + }, nil +} + +func (srv *ContentService) Healthz( + ctx context.Context, + rdr *jsonapi.HealthzIdRequest, +) (*empty.Empty, error) { + return &empty.Empty{}, nil +} + +func (srv *ContentService) GetContentBySlug( + ctx context.Context, + rdr *content.ContentRequest, +) (*content.Content, error) { + ctnt := &content.Content{} + if err := rdr.Validate(); err != nil { + return ctnt, aphgrpc.HandleInvalidParamError(ctx, err) + } + mcont, err := srv.repo.GetContentBySlug(rdr.Slug) + if err != nil { + return ctnt, aphgrpc.HandleGetError(ctx, err) + } + if mcont.NotFound { + return ctnt, aphgrpc.HandleNotFoundError(ctx, err) + } + cid, _ := strconv.ParseInt(mcont.Key, 10, 64) + + return srv.buildContent(cid, mcont), nil +} + +func (srv *ContentService) GetContent( + ctx context.Context, + rdr *content.ContentIdRequest, +) (*content.Content, error) { + ctnt := &content.Content{} + if err := rdr.Validate(); err != nil { + return ctnt, aphgrpc.HandleInvalidParamError(ctx, err) + } + mcont, err := srv.repo.GetContent(rdr.Id) + if err != nil { + return ctnt, aphgrpc.HandleGetError(ctx, err) + } + if mcont.NotFound { + return ctnt, aphgrpc.HandleNotFoundError(ctx, err) + } + cid, _ := strconv.ParseInt(mcont.Key, 10, 64) + + return srv.buildContent(cid, mcont), nil +} + +func (srv *ContentService) buildContent( + cid int64, + mcont *model.ContentDoc, +) *content.Content { + return &content.Content{ + Data: &content.ContentData{ + Type: srv.GetResourceName(), + Id: cid, + Attributes: &content.ContentAttributes{ + Name: mcont.Name, + Namespace: mcont.Namespace, + Slug: mcont.Slug, + CreatedBy: mcont.CreatedBy, + UpdatedBy: mcont.UpdatedBy, + CreatedAt: aphgrpc.TimestampProto(mcont.CreatedOn), + UpdatedAt: aphgrpc.TimestampProto(mcont.UpdatedOn), + Content: mcont.Content, + }, + }} +} + +func (srv *ContentService) StoreContent( + ctx context.Context, + req *content.StoreContentRequest, +) (*content.Content, error) { + ctnt := &content.Content{} + if err := req.Validate(); err != nil { + return ctnt, aphgrpc.HandleInvalidParamError(ctx, err) + } + mcont, err := srv.repo.AddContent(req.Data.Attributes) + if err != nil { + return ctnt, aphgrpc.HandleGetError(ctx, err) + } + cid, _ := strconv.ParseInt(mcont.Key, 10, 64) + ctnt = srv.buildContent(cid, mcont) + //nolint:errcheck + srv.publisher.Publish(srv.Topics["contentCreate"], ctnt) + + return ctnt, nil +} + +func (srv *ContentService) UpdateContent( + ctx context.Context, + req *content.UpdateContentRequest, +) (*content.Content, error) { + ctnt := &content.Content{} + if err := req.Validate(); err != nil { + return ctnt, aphgrpc.HandleInvalidParamError(ctx, err) + } + mcont, err := srv.repo.EditContent(req.Id, req.Data.Attributes) + if err != nil { + return ctnt, aphgrpc.HandleGetError(ctx, err) + } + cid, _ := strconv.ParseInt(mcont.Key, 10, 64) + ctnt = srv.buildContent(cid, mcont) + //nolint:errcheck + srv.publisher.Publish(srv.Topics["contentUpdate"], ctnt) + + return ctnt, nil +} + +func (srv *ContentService) DeleteContent( + ctx context.Context, + req *content.ContentIdRequest, +) (*empty.Empty, error) { + if err := req.Validate(); err != nil { + return &empty.Empty{}, aphgrpc.HandleInvalidParamError(ctx, err) + } + err := srv.repo.DeleteContent(req.Id) + if err != nil { + return &empty.Empty{}, aphgrpc.HandleGetError(ctx, err) + } + + return &empty.Empty{}, nil +} diff --git a/internal/app/service/service_test.go b/internal/app/service/service_test.go new file mode 100644 index 0000000..be0b09e --- /dev/null +++ b/internal/app/service/service_test.go @@ -0,0 +1,300 @@ +package service + +import ( + "context" + "encoding/json" + "net" + "os" + "testing" + "time" + + "github.com/dictyBase/aphgrpc" + manager "github.com/dictyBase/arangomanager" + "github.com/dictyBase/arangomanager/testarango" + "github.com/dictyBase/go-genproto/dictybaseapis/content" + "github.com/dictyBase/modware-content/internal/repository/arangodb" + "github.com/dictyBase/modware-content/internal/testutils" + "github.com/stretchr/testify/require" + "google.golang.org/grpc" + "google.golang.org/grpc/credentials/insecure" + "google.golang.org/grpc/test/bufconn" +) + +type MockMessage struct{} + +func (msn *MockMessage) Publish(subject string, cont *content.Content) error { + return nil +} + +func (msn *MockMessage) Close() error { + return nil +} + +func setup(t *testing.T) (content.ContentServiceClient, *require.Assertions) { + t.Helper() + assert := require.New(t) + tra, err := testarango.NewTestArangoFromEnv(true) + assert.NoError(err, "expect no error from creating an arangodb instance") + repo, err := arangodb.NewContentRepo( + &manager.ConnectParams{ + User: tra.User, + Pass: tra.Pass, + Database: tra.Database, + Host: tra.Host, + Port: tra.Port, + Istls: false, + }, manager.RandomString(16, 19), + ) + assert.NoErrorf( + err, + "expect no error connecting to annotation repository, received %s", + err, + ) + baseServer := grpc.NewServer() + srv, err := NewContentService(&Params{ + Repository: repo, + Publisher: &MockMessage{}, + Group: "groups", + Options: []aphgrpc.Option{ + aphgrpc.TopicsOption(map[string]string{ + "contentCreate": "ContentService.Create", + "contentDelete": "ContentService.Delete", + "contentUpdate": "ContentService.Update", + }), + }, + }) + assert.NoError(err, "expect no error from creating service") + content.RegisterContentServiceServer(baseServer, srv) + listener := bufconn.Listen(1024 * 1024) + go func() { + if err := baseServer.Serve(listener); err != nil { + t.Logf("error in listener %s", err) + os.Exit(1) + } + }() + dialer := func(context.Context, string) (net.Conn, error) { + conn, err := listener.Dial() + assert.NoError(err, "expect no error from creating listener") + + return conn, nil + } + conn, err := grpc.DialContext( + context.Background(), + "", + grpc.WithContextDialer(dialer), + grpc.WithTransportCredentials(insecure.NewCredentials()), + ) + assert.NoError(err, "expect no error in creating grpc client") + t.Cleanup(func() { + _ = repo.Dbh().Drop() + conn.Close() + listener.Close() + baseServer.Stop() + }) + + return content.NewContentServiceClient(conn), assert +} + +func TestStoreContent(t *testing.T) { + t.Parallel() + client, assert := setup(t) + nct, err := client.StoreContent( + context.Background(), + &content.StoreContentRequest{ + Data: &content.StoreContentRequest_Data{ + Attributes: testutils.NewStoreContent("catalog", "dsc"), + }, + }, + ) + assert.NoError(err, "expect no error from storing content") + assert.Equal(nct.Data.Attributes.Name, "catalog", "name should match") + assert.Equal(nct.Data.Attributes.Namespace, "dsc", "namespace should match") + assert.Equal(nct.Data.Attributes.Slug, "catalog-dsc", "slug should match") + assert.Equal( + nct.Data.Attributes.CreatedBy, + "content@content.org", + "should match created_by", + ) + assert.Equal( + nct.Data.Attributes.CreatedAt, + nct.Data.Attributes.UpdatedAt, + "created_at should match updated_at", + ) + assert.True( + nct.Data.Attributes.CreatedAt.AsTime().Before(time.Now()), + "should have created before the current time", + ) + ctnt, err := testutils.ContentFromStore(nct.Data.Attributes.Content) + assert.NoError(err, "should not have any error with json unmarshaling") + assert.Equal( + ctnt, + &testutils.ContentJSON{Paragraph: "paragraph", Text: "text"}, + "should match the content", + ) +} + +func TestGetContentBySlug(t *testing.T) { + t.Parallel() + client, assert := setup(t) + nct, err := client.StoreContent( + context.Background(), + &content.StoreContentRequest{ + Data: &content.StoreContentRequest_Data{ + Attributes: testutils.NewStoreContent("catalog", "dsc"), + }, + }, + ) + assert.NoError(err, "expect no error from storing content") + sct, err := client.GetContentBySlug( + context.Background(), + &content.ContentRequest{Slug: nct.Data.Attributes.Slug}, + ) + assert.NoError(err, "expect no error from fetching content by slug") + testContentProperties(assert, sct, nct) +} + +func TestGetContent(t *testing.T) { + t.Parallel() + client, assert := setup(t) + nct, err := client.StoreContent( + context.Background(), + &content.StoreContentRequest{ + Data: &content.StoreContentRequest_Data{ + Attributes: testutils.NewStoreContent("catalog", "dsc"), + }, + }, + ) + assert.NoError(err, "expect no error from storing content") + sct, err := client.GetContent( + context.Background(), + &content.ContentIdRequest{Id: nct.Data.Id}, + ) + assert.NoError(err, "expect no error from fetching content by id") + testContentProperties(assert, sct, nct) +} + +func TestUpdateConent(t *testing.T) { + t.Parallel() + client, assert := setup(t) + nct, err := client.StoreContent( + context.Background(), + &content.StoreContentRequest{ + Data: &content.StoreContentRequest_Data{ + Attributes: testutils.NewStoreContent("catalog", "dsc"), + }, + }, + ) + assert.NoError(err, "expect no error from storing content") + cdata, _ := json.Marshal(&testutils.ContentJSON{ + Paragraph: "clompous", + Text: "jack", + }) + sct, err := client.UpdateContent( + context.Background(), + &content.UpdateContentRequest{ + Id: nct.Data.Id, + Data: &content.UpdateContentRequest_Data{ + Attributes: &content.ExistingContentAttributes{ + UpdatedBy: "packer@packer.com", + Content: string(cdata), + }, + }, + }, + ) + assert.NoErrorf(err, "expect no error from updating content %s", err) + assert.Equal( + sct.Data.Attributes.UpdatedBy, + "packer@packer.com", + "should match updated by", + ) + assert.Equal( + []byte(sct.Data.Attributes.Content), + cdata, + "should match updated content", + ) + assert.True( + sct.Data.Attributes.UpdatedAt.AsTime(). + After(sct.Data.Attributes.CreatedAt.AsTime()), + "should have correct updated timestamp", + ) + assert.Equal( + sct.Data.Attributes.Name, + nct.Data.Attributes.Name, + "name should match", + ) + assert.Equal( + sct.Data.Attributes.Namespace, + nct.Data.Attributes.Namespace, + "namespace should match", + ) + assert.Equal( + sct.Data.Attributes.Slug, + nct.Data.Attributes.Slug, + "slug should match", + ) + assert.Equal( + sct.Data.Attributes.CreatedBy, + nct.Data.Attributes.CreatedBy, + "should match created_by", + ) +} + +func TestDeleteContent(t *testing.T) { + t.Parallel() + client, assert := setup(t) + nct, err := client.StoreContent( + context.Background(), + &content.StoreContentRequest{ + Data: &content.StoreContentRequest_Data{ + Attributes: testutils.NewStoreContent("catalog", "dsc"), + }, + }, + ) + assert.NoError(err, "expect no error from storing content") + _, err = client.DeleteContent( + context.Background(), + &content.ContentIdRequest{Id: nct.Data.Id}, + ) + assert.NoError(err, "expect no error from deleting content") +} + +func testContentProperties( + assert *require.Assertions, + sct, nct *content.Content, +) { + assert.Equal( + sct.Data.Attributes.Name, + nct.Data.Attributes.Name, + "name should match", + ) + assert.Equal( + sct.Data.Attributes.Namespace, + nct.Data.Attributes.Namespace, + "namespace should match", + ) + assert.Equal( + sct.Data.Attributes.Slug, + nct.Data.Attributes.Slug, + "slug should match", + ) + assert.Equal( + sct.Data.Attributes.CreatedBy, + nct.Data.Attributes.CreatedBy, + "should match created_by", + ) + assert.Equal( + sct.Data.Attributes.CreatedAt, + nct.Data.Attributes.CreatedAt, + "created_at should match", + ) + assert.Equal( + sct.Data.Attributes.UpdatedAt, + nct.Data.Attributes.UpdatedAt, + "updated_at should match", + ) + assert.Equal( + sct.Data.Attributes.Content, + nct.Data.Attributes.Content, + "should match raw conent", + ) +} diff --git a/internal/message/message.go b/internal/message/message.go new file mode 100644 index 0000000..8f48b5a --- /dev/null +++ b/internal/message/message.go @@ -0,0 +1,13 @@ +package message + +import ( + "github.com/dictyBase/go-genproto/dictybaseapis/content" +) + +// Publisher manages publishing of message. +type Publisher interface { + // Publis publishes the annotation object using the given subject + Publish(subject string, cont *content.Content) error + // Close closes the connection to the underlying messaging server + Close() error +} diff --git a/internal/message/nats/nats.go b/internal/message/nats/nats.go new file mode 100644 index 0000000..06085e0 --- /dev/null +++ b/internal/message/nats/nats.go @@ -0,0 +1,52 @@ +package nats + +import ( + "fmt" + + "github.com/dictyBase/go-genproto/dictybaseapis/content" + "github.com/dictyBase/modware-content/internal/message" + gnats "github.com/nats-io/nats.go" + "github.com/nats-io/nats.go/encoders/protobuf" +) + +type natsPublisher struct { + econn *gnats.EncodedConn +} + +func NewPublisher( + host, port string, + options ...gnats.Option, +) (message.Publisher, error) { + ncr, err := gnats.Connect( + fmt.Sprintf("nats://%s:%s", host, port), + options...) + if err != nil { + return &natsPublisher{}, fmt.Errorf( + "error in connecting to nats server %s", + err, + ) + } + ec, err := gnats.NewEncodedConn(ncr, protobuf.PROTOBUF_ENCODER) + if err != nil { + return &natsPublisher{}, fmt.Errorf("error in encoding %s", err) + } + + return &natsPublisher{econn: ec}, nil +} + +func (n *natsPublisher) Publish( + subj string, + cont *content.Content, +) error { + if err := n.econn.Publish(subj, cont); err != nil { + return fmt.Errorf("error in publishing through nats %s", err) + } + + return nil +} + +func (n *natsPublisher) Close() error { + n.econn.Close() + + return nil +} diff --git a/internal/model/model.go b/internal/model/model.go new file mode 100644 index 0000000..59d5778 --- /dev/null +++ b/internal/model/model.go @@ -0,0 +1,56 @@ +package model + +import ( + "regexp" + "strings" + "time" + + driver "github.com/arangodb/go-driver" +) + +var noncharReg = regexp.MustCompile("[^a-z0-9]+") + +type ContentDoc struct { + driver.DocumentMeta + Name string `json:"name" validate:"required"` + Slug string `json:"slug" validate:"required"` + Namespace string `json:"namespace" validate:"required"` + CreatedBy string `json:"created_by" validate:"email"` + UpdatedBy string `json:"updated_by" validate:"required,email"` + Content string `json:"content" validate:"required"` + CreatedOn time.Time `json:"created_on"` + UpdatedOn time.Time `json:"updated_on"` + NotFound bool +} + +func Schema() []byte { + return []byte(`{ + "type": "object", + "properties": { + "name": {"type": "string"}, + "namespace": {"type": "string"}, + "slug": {"type": "string"}, + "content": {"type": "string"}, + "created_by": {"type": "string", "format": "email"}, + "updated_by": {"type": "string", "format": "email"}, + "created_on": {"type": "string", "format": "date-time"}, + "updated_on": {"type": "string", "format": "date-time"} + }, + "required": [ + "name", + "namespace", + "slug", + "content", + "created_by", + "created_on" + ] + } + `) +} + +func Slugify(name string) string { + return strings.Trim( + noncharReg.ReplaceAllString(strings.ToLower(name), "-"), + "-", + ) +} diff --git a/internal/repository/arangodb/arangodb.go b/internal/repository/arangodb/arangodb.go new file mode 100644 index 0000000..2b87a47 --- /dev/null +++ b/internal/repository/arangodb/arangodb.go @@ -0,0 +1,218 @@ +package arangodb + +import ( + "context" + "errors" + "fmt" + "strconv" + + driver "github.com/arangodb/go-driver" + manager "github.com/dictyBase/arangomanager" + "github.com/dictyBase/go-genproto/dictybaseapis/content" + "github.com/dictyBase/modware-content/internal/model" + "github.com/dictyBase/modware-content/internal/repository" +) + +type arangorepository struct { + sess *manager.Session + database *manager.Database + content driver.Collection +} + +func NewContentRepo( + connP *manager.ConnectParams, + collection string, +) (repository.ContentRepository, error) { + arp := &arangorepository{} + sess, dbs, err := manager.NewSessionDb(connP) + if err != nil { + return arp, fmt.Errorf("error in getting new session %s", err) + } + arp.sess = sess + arp.database = dbs + schemaOptions := &driver.CollectionSchemaOptions{} + if err := schemaOptions.LoadRule(model.Schema()); err != nil { + return arp, fmt.Errorf("error in loading schema %s", err) + } + contentCollection, err := dbs.FindOrCreateCollection( + collection, + &driver.CreateCollectionOptions{Schema: schemaOptions}, + ) + if err != nil { + return arp, fmt.Errorf( + "error in finding or creating collection %s", + err, + ) + } + arp.content = contentCollection + _, _, err = dbs.EnsurePersistentIndex( + collection, + []string{"slug"}, + &driver.EnsurePersistentIndexOptions{ + Unique: true, + InBackground: true, + Name: "collection_slug_idx", + }, + ) + if err != nil { + return arp, fmt.Errorf( + "error in creating unique index for slug field %s", + err, + ) + } + _, _, err = dbs.EnsurePersistentIndex( + collection, + []string{"namespace"}, + &driver.EnsurePersistentIndexOptions{ + InBackground: true, + Name: "content_namespace_idx", + }, + ) + if err != nil { + return arp, fmt.Errorf( + "error in creating index for name field %s", + err, + ) + } + + return arp, nil +} + +func (arp *arangorepository) GetContentBySlug( + slug string, +) (*model.ContentDoc, error) { + cntModel := &model.ContentDoc{} + resp, err := arp.database.GetRow( + ContentFindBySlug, + map[string]interface{}{ + "@content_collection": arp.content.Name(), + "slug": slug, + }, + ) + if err != nil { + return cntModel, fmt.Errorf( + "error in getting content by slug name %s", + err, + ) + } + if resp.IsEmpty() { + cntModel.NotFound = true + + return cntModel, nil + } + if err := resp.Read(cntModel); err != nil { + return cntModel, fmt.Errorf( + "error in reading response to struct %s", + err, + ) + } + + return cntModel, nil +} + +func (arp *arangorepository) GetContent(cid int64) (*model.ContentDoc, error) { + cntModel := &model.ContentDoc{} + cntCollection, err := arp.database.Collection(arp.content.Name()) + if err != nil { + return cntModel, fmt.Errorf("error in getting collection %s", err) + } + meta, err := cntCollection.ReadDocument( + context.Background(), + strconv.Itoa(int(cid)), + cntModel, + ) + if err != nil { + if driver.IsNotFoundGeneral(err) { + cntModel.NotFound = true + + return cntModel, nil + } + + return cntModel, fmt.Errorf("error in reading document %s", err) + } + cntModel.ID = meta.ID + cntModel.Key = meta.Key + + return cntModel, nil +} + +func (arp *arangorepository) DeleteContent(cid int64) error { + cntCollection, err := arp.database.Collection(arp.content.Name()) + if err != nil { + return fmt.Errorf("error in getting collection %s", err) + } + _, err = cntCollection.RemoveDocument( + context.Background(), + strconv.Itoa(int(cid)), + ) + if err != nil { + errMsg := fmt.Sprintf("error in reading document %s", err) + if driver.IsNotFoundGeneral(err) { + errMsg = fmt.Sprintf("document with ID %d not found", cid) + } + + return errors.New(errMsg) + } + + return nil +} + +func (arp *arangorepository) AddContent( + cattr *content.NewContentAttributes, +) (*model.ContentDoc, error) { + cntModel := &model.ContentDoc{} + res, err := arp.database.DoRun( + ContentInsert, + map[string]interface{}{ + "name": cattr.Name, + "namespace": cattr.Namespace, + "created_by": cattr.CreatedBy, + "updated_by": cattr.CreatedBy, + "content": cattr.Content, + "slug": cattr.Slug, + "@content_collection": arp.content.Name(), + }, + ) + if err != nil { + return cntModel, fmt.Errorf("error in creating new content %s", err) + } + if err := res.Read(cntModel); err != nil { + return cntModel, fmt.Errorf( + "error in reading the model to struct %s", + err, + ) + } + + return cntModel, nil +} + +func (arp *arangorepository) EditContent( + cid int64, + cattr *content.ExistingContentAttributes, +) (*model.ContentDoc, error) { + cntModel := &model.ContentDoc{} + res, err := arp.database.DoRun( + ContentUpdate, + map[string]interface{}{ + "key": strconv.FormatInt(cid, 10), + "updated_by": cattr.UpdatedBy, + "content": cattr.Content, + "@content_collection": arp.content.Name(), + }, + ) + if err != nil { + return cntModel, fmt.Errorf("error in updating content %s", err) + } + if err := res.Read(cntModel); err != nil { + return cntModel, fmt.Errorf( + "error in reading the model to struct %s", + err, + ) + } + + return cntModel, nil +} + +func (arp *arangorepository) Dbh() *manager.Database { + return arp.database +} diff --git a/internal/repository/arangodb/arangodb_test.go b/internal/repository/arangodb/arangodb_test.go new file mode 100644 index 0000000..77fad88 --- /dev/null +++ b/internal/repository/arangodb/arangodb_test.go @@ -0,0 +1,208 @@ +package arangodb + +import ( + "encoding/json" + "strconv" + "testing" + "time" + + manager "github.com/dictyBase/arangomanager" + "github.com/dictyBase/arangomanager/testarango" + "github.com/dictyBase/go-genproto/dictybaseapis/content" + "github.com/dictyBase/modware-content/internal/model" + "github.com/dictyBase/modware-content/internal/repository" + "github.com/dictyBase/modware-content/internal/testutils" + "github.com/stretchr/testify/require" +) + +func setUp(t *testing.T) (*require.Assertions, repository.ContentRepository) { + t.Helper() + tra, err := testarango.NewTestArangoFromEnv(true) + if err != nil { + t.Fatalf("unable to construct new TestArango instance %s", err) + } + assert := require.New(t) + repo, err := NewContentRepo( + &manager.ConnectParams{ + User: tra.User, + Pass: tra.Pass, + Database: tra.Database, + Host: tra.Host, + Port: tra.Port, + Istls: false, + }, manager.RandomString(16, 19), + ) + assert.NoErrorf( + err, + "expect no error connecting to annotation repository, received %s", + err, + ) + + return assert, repo +} + +func tearDown(repo repository.ContentRepository) { + _ = repo.Dbh().Drop() +} + +func TestAddContent(t *testing.T) { + t.Parallel() + assert, repo := setUp(t) + defer tearDown(repo) + nct, err := repo.AddContent(testutils.NewStoreContent("catalog", "dsc")) + assert.NoErrorf(err, "expect no error from creating content %s", err) + assert.Equal(nct.Name, "catalog", "name should match") + assert.Equal(nct.Namespace, "dsc", "namespace should match") + assert.Equal(nct.Slug, "catalog-dsc", "slug should match") + assert.Equal( + nct.CreatedBy, + "content@content.org", + "should match created_by", + ) + assert.True( + nct.CreatedOn.Equal(nct.UpdatedOn), + "created_on should match updated_on", + ) + assert.True( + nct.CreatedOn.Before(time.Now()), + "should have created before the current time", + ) + ctnt, err := testutils.ContentFromStore(nct.Content) + assert.NoError(err, "should not have any error with json unmarshaling") + assert.Equal( + ctnt, + &testutils.ContentJSON{Paragraph: "paragraph", Text: "text"}, + "should match the content", + ) +} + +func TestGetContentBySlug(t *testing.T) { + t.Parallel() + assert, repo := setUp(t) + defer tearDown(repo) + nct, err := repo.AddContent(testutils.NewStoreContent("catalog", "dsc")) + assert.NoErrorf(err, "expect no error from creating content %s", err) + sct, err := repo.GetContentBySlug(nct.Slug) + assert.NoErrorf(err, "expect no error from getting content by slug %s", err) + testContentProperties(assert, sct, nct) +} + +func TestGetContent(t *testing.T) { + t.Parallel() + assert, repo := setUp(t) + defer tearDown(repo) + nct, err := repo.AddContent(testutils.NewStoreContent("catalog", "dsc")) + assert.NoErrorf(err, "expect no error from creating content %s", err) + key, err := strconv.ParseInt(nct.Key, 10, 64) + assert.NoErrorf( + err, + "expect no error from string to int64 conversion of key %s", + err, + ) + sct, err := repo.GetContent(key) + assert.NoErrorf(err, "expect no error from getting content by slug %s", err) + testContentProperties(assert, sct, nct) +} + +func TestDeleteContent(t *testing.T) { + t.Parallel() + assert, repo := setUp(t) + defer tearDown(repo) + nct, err := repo.AddContent(testutils.NewStoreContent("catalog", "dsc")) + assert.NoErrorf(err, "expect no error from creating content %s", err) + key, err := strconv.ParseInt(nct.Key, 10, 64) + assert.NoErrorf( + err, + "expect no error from string to int64 conversion of key %s", + err, + ) + err = repo.DeleteContent(key) + assert.NoErrorf( + err, + "expect no error from deleting content by slug %s", + err, + ) + ecnt, err := repo.GetContent(key) + assert.NoErrorf(err, "expect no error from getting content by slug %s", err) + assert.True(ecnt.NotFound, "expect no record to be found") +} + +func TestEditContent(t *testing.T) { + t.Parallel() + assert, repo := setUp(t) + defer tearDown(repo) + nct, err := repo.AddContent(testutils.NewStoreContent("catalog", "dsc")) + assert.NoErrorf(err, "expect no error from creating content %s", err) + key, err := strconv.ParseInt(nct.Key, 10, 64) + assert.NoErrorf( + err, + "expect no error from string to int64 conversion of key %s", + err, + ) + cdata, _ := json.Marshal(&testutils.ContentJSON{ + Paragraph: "clompous", + Text: "jack", + }) + sct, err := repo.EditContent( + key, + &content.ExistingContentAttributes{ + UpdatedBy: "packer@packer.com", + Content: string(cdata), + }, + ) + assert.NoErrorf(err, "expect no error from updating content %s", err) + assert.Equal(sct.UpdatedBy, "packer@packer.com", "should match updated by") + assert.Equal([]byte(sct.Content), cdata, "should match updated content") + assert.True( + sct.UpdatedOn.After(sct.CreatedOn), + "should have correct updated timestamp", + ) + assert.Equal(sct.Name, nct.Name, "name should match") + assert.Equal(sct.Namespace, nct.Namespace, "namespace should match") + assert.Equal(sct.Slug, nct.Slug, "slug should match") + assert.Equal( + sct.CreatedBy, + nct.CreatedBy, + "should match created_by", + ) +} + +func TestSchemaValidation(t *testing.T) { + t.Parallel() + assert, repo := setUp(t) + defer tearDown(repo) + _, err := repo.AddContent(testutils.NewStoreContent("catalog", "dsc")) + assert.NoErrorf(err, "expect no error from creating content %s", err) + _, err = repo.AddContent(testutils.NewStoreContent("catalog", "dsc")) + assert.Error(err, "expect schema validation error for duplicate slug") + ncnt := testutils.NewStoreContent("price", "dsc") + ncnt.CreatedBy = "yadayadayada" + _, err = repo.AddContent(ncnt) + assert.Error( + err, + "expect schema validation error for created by field does not have an email address", + ) +} + +func testContentProperties( + assert *require.Assertions, + sct, nct *model.ContentDoc, +) { + assert.Equal(sct.Name, nct.Name, "name should match") + assert.Equal(sct.Namespace, nct.Namespace, "namespace should match") + assert.Equal(sct.Slug, nct.Slug, "slug should match") + assert.Equal( + sct.CreatedBy, + nct.CreatedBy, + "should match created_by", + ) + assert.True( + sct.CreatedOn.Equal(nct.CreatedOn), + "created_on should match", + ) + assert.True( + sct.UpdatedOn.Equal(nct.UpdatedOn), + "created_on should match", + ) + assert.Equal(sct.Content, nct.Content, "should match raw conent") +} diff --git a/internal/repository/arangodb/statement.go b/internal/repository/arangodb/statement.go new file mode 100644 index 0000000..4810f72 --- /dev/null +++ b/internal/repository/arangodb/statement.go @@ -0,0 +1,32 @@ +package arangodb + +const ( + ContentFindBySlug = ` + FOR cnt IN @@content_collection + FILTER cnt.slug == @slug + LIMIT 1 + RETURN cnt + ` + + ContentInsert = ` + INSERT { + name: @name, + slug: @slug, + namespace: @namespace, + created_by: @created_by, + updated_by: @updated_by, + content: @content, + created_on : DATE_ISO8601(DATE_NOW()), + updated_on : DATE_ISO8601(DATE_NOW()), + } INTO @@content_collection RETURN NEW + ` + + ContentUpdate = ` + UPDATE { + _key: @key, + updated_by: @updated_by, + updated_on : DATE_ISO8601(DATE_NOW()), + content: @content + } IN @@content_collection RETURN NEW + ` +) diff --git a/internal/repository/repository.go b/internal/repository/repository.go new file mode 100644 index 0000000..4cb5c0f --- /dev/null +++ b/internal/repository/repository.go @@ -0,0 +1,19 @@ +package repository + +import ( + manager "github.com/dictyBase/arangomanager" + "github.com/dictyBase/go-genproto/dictybaseapis/content" + "github.com/dictyBase/modware-content/internal/model" +) + +type ContentRepository interface { + GetContentBySlug(slug string) (*model.ContentDoc, error) + GetContent(cid int64) (*model.ContentDoc, error) + AddContent(cnt *content.NewContentAttributes) (*model.ContentDoc, error) + EditContent( + cid int64, + cnt *content.ExistingContentAttributes, + ) (*model.ContentDoc, error) + DeleteContent(cid int64) error + Dbh() *manager.Database +} diff --git a/internal/testutils/testutils.go b/internal/testutils/testutils.go new file mode 100644 index 0000000..22956ff --- /dev/null +++ b/internal/testutils/testutils.go @@ -0,0 +1,39 @@ +package testutils + +import ( + "encoding/json" + "fmt" + + "github.com/dictyBase/go-genproto/dictybaseapis/content" + "github.com/dictyBase/modware-content/internal/model" +) + +type ContentJSON struct { + Paragraph string `json:"paragraph"` + Text string `json:"text"` +} + +func NewStoreContent(name, namespace string) *content.NewContentAttributes { + cdata, _ := json.Marshal(&ContentJSON{ + Paragraph: "paragraph", + Text: "text", + }) + + return &content.NewContentAttributes{ + Name: name, + Namespace: namespace, + CreatedBy: "content@content.org", + Content: string(cdata), + Slug: model.Slugify(fmt.Sprintf("%s %s", name, namespace)), + } +} + +func ContentFromStore(jsctnt string) (*ContentJSON, error) { + ctnt := &ContentJSON{} + err := json.Unmarshal([]byte(jsctnt), ctnt) + if err != nil { + return ctnt, fmt.Errorf("error in unmarshing json %s", err) + } + + return ctnt, nil +} diff --git a/main.go b/main.go deleted file mode 100644 index e63ffc1..0000000 --- a/main.go +++ /dev/null @@ -1,88 +0,0 @@ -package main - -import ( - "log" - "os" - - "github.com/dictyBase/modware-content/commands" - "github.com/dictyBase/modware-content/validate" - "github.com/urfave/cli" -) - -func main() { - app := cli.NewApp() - app.Name = "modware-content" - app.Usage = "cli for modware-content microservice" - app.Version = "2.0.0" - app.Flags = []cli.Flag{ - cli.StringFlag{ - Name: "log-format", - Usage: "format of the logging out, either of json or text.", - Value: "json", - }, - cli.StringFlag{ - Name: "log-level", - Usage: "log level for the application", - Value: "error", - }, - } - app.Commands = []cli.Command{ - { - Name: "start-server", - Usage: "starts the modware-content microservice with HTTP and grpc backends", - Action: commands.RunServer, - Before: validate.ValidateServerArgs, - Flags: []cli.Flag{ - cli.StringFlag{ - Name: "dictycontent-pass, pass", - EnvVar: "DICTYCONTENT_PASS", - Usage: "dictycontent database password", - }, - cli.StringFlag{ - Name: "dictycontent-db, db", - EnvVar: "DICTYCONTENT_DB", - Usage: "dictycontent database name", - }, - cli.StringFlag{ - Name: "dictycontent-user, u, user", - EnvVar: "DICTYCONTENT_USER", - Usage: "dictycontent database user", - }, - cli.StringFlag{ - Name: "dictycontent-host", - Value: "dictycontent-backend", - EnvVar: "DICTYCONTENT_BACKEND_SERVICE_HOST", - Usage: "dictycontent database host", - }, - cli.StringFlag{ - Name: "dictycontent-port", - EnvVar: "DICTYCONTENT_BACKEND_SERVICE_PORT", - Usage: "dictycontent database port", - }, - cli.StringFlag{ - Name: "content-api-http-host", - EnvVar: "CONTENT_API_HTTP_HOST", - Usage: "public hostname serving the http api, by default the default port will be appended to http://localhost", - }, - cli.StringFlag{ - Name: "nats-host", - EnvVar: "NATS_SERVICE_HOST", - Usage: "nats messaging server host", - }, - cli.StringFlag{ - Name: "nats-port", - EnvVar: "NATS_SERVICE_PORT", - Usage: "nats messaging server port", - }, - cli.StringFlag{ - Name: "port", - Usage: "tcp port at which the servers will be available", - Value: "9555", - }, - }, - }, - } - if err := app.Run(os.Args); err != nil { - log.Fatalf("error in running command %s", err) - } -} diff --git a/message/message.go b/message/message.go deleted file mode 100644 index 3cf6fba..0000000 --- a/message/message.go +++ /dev/null @@ -1,13 +0,0 @@ -package message - -import ( - "context" - "time" - - "github.com/dictyBase/go-genproto/dictybaseapis/pubsub" -) - -type Request interface { - UserRequest(string, *pubsub.IdRequest, time.Duration) (*pubsub.UserReply, error) - UserRequestWithContext(context.Context, string, *pubsub.IdRequest) (*pubsub.UserReply, error) -} diff --git a/message/nats/req.go b/message/nats/req.go deleted file mode 100644 index eeed7e7..0000000 --- a/message/nats/req.go +++ /dev/null @@ -1,62 +0,0 @@ -package nats - -import ( - "context" - "fmt" - "time" - - "github.com/dictyBase/go-genproto/dictybaseapis/pubsub" - "github.com/dictyBase/modware-identity/message" - gnats "github.com/nats-io/go-nats" - "github.com/nats-io/go-nats/encoders/protobuf" -) - -type natsRequest struct { - econn *gnats.EncodedConn -} - -func NewRequest( - host, port string, - options ...gnats.Option, -) (message.Request, error) { - gnc, err := gnats.Connect( - fmt.Sprintf("nats://%s:%s", host, port), - options...) - if err != nil { - return &natsRequest{}, fmt.Errorf("error in connecting nats %s", err) - } - ec, err := gnats.NewEncodedConn(gnc, protobuf.PROTOBUF_ENCODER) - if err != nil { - return &natsRequest{}, fmt.Errorf("error in encoding for nats %s", err) - } - - return &natsRequest{econn: ec}, nil -} - -func (n *natsRequest) UserRequest( - subj string, - r *pubsub.IdRequest, - timeout time.Duration, -) (*pubsub.UserReply, error) { - reply := &pubsub.UserReply{} - err := n.econn.Request(subj, r, reply, timeout) - if err != nil { - return reply, fmt.Errorf("error in getting reply %s", err) - } - - return reply, nil -} - -func (n *natsRequest) UserRequestWithContext( - ctx context.Context, - subj string, - r *pubsub.IdRequest, -) (*pubsub.UserReply, error) { - reply := &pubsub.UserReply{} - err := n.econn.RequestWithContext(ctx, subj, r, reply) - if err != nil { - return reply, fmt.Errorf("error in getting reply %s", err) - } - - return reply, nil -} diff --git a/server/content.go b/server/content.go deleted file mode 100644 index b03d1c3..0000000 --- a/server/content.go +++ /dev/null @@ -1,447 +0,0 @@ -package server - -import ( - "context" - "fmt" - "regexp" - "strings" - - "github.com/dictyBase/apihelpers/aphgrpc" - "github.com/dictyBase/go-genproto/dictybaseapis/api/jsonapi" - "github.com/dictyBase/go-genproto/dictybaseapis/content" - "github.com/dictyBase/go-genproto/dictybaseapis/pubsub" - "github.com/dictyBase/modware-content/message" - "github.com/golang/protobuf/ptypes/empty" - "google.golang.org/grpc" - "google.golang.org/grpc/codes" - "google.golang.org/grpc/metadata" - "google.golang.org/grpc/status" - dat "gopkg.in/mgutz/dat.v2/dat" - runner "gopkg.in/mgutz/dat.v2/sqlx-runner" -) - -const ( - contentDbTable = "content" - namespaceDbTable = "namespace" - prKeyCol = "content_id" -) - -var contentCols = []string{ - "content_id", - "name", - "slug", - "created_by", - "updated_by", - "created_at", - "updated_at", - "content", - "namespace_id", -} - -var noncharReg = regexp.MustCompile("[^a-z0-9]+") - -type dbContent struct { - ContentId int64 `db:"content_id"` - Name dat.NullString `db:"name"` - Slug dat.NullString `db:"slug"` - CreatedBy dat.NullInt64 `db:"created_by"` - UpdatedBy dat.NullInt64 `db:"updated_by"` - CreatedAt dat.NullTime `db:"created_at"` - UpdatedAt dat.NullTime `db:"updated_at"` - Namespace dat.NullString `db:"namespace"` - NamespaceId int64 `db:"namespace_id"` - Content dat.JSON `db:"content"` -} - -type dbContentCore struct { - ContentId int64 `db:"content_id"` - Name dat.NullString `db:"name"` - Slug dat.NullString `db:"slug"` - CreatedBy dat.NullInt64 `db:"created_by"` - UpdatedBy dat.NullInt64 `db:"updated_by"` - CreatedAt dat.NullTime `db:"created_at"` - UpdatedAt dat.NullTime `db:"updated_at"` - NamespaceId int64 `db:"namespace_id"` - Content dat.JSON `db:"content"` -} - -type ContentService struct { - *aphgrpc.Service - request message.Request -} - -func defaultOptions() *aphgrpc.ServiceOptions { - return &aphgrpc.ServiceOptions{ - PathPrefix: "contents", - Resource: "contents", - Topics: map[string]string{ - "userExists": "UserService.Exist", - }, - } -} - -func NewContentService( - dbh *runner.DB, - req message.Request, - options ...aphgrpc.Option, -) *ContentService { - so := defaultOptions() - for _, optfn := range options { - optfn(so) - } - srv := &aphgrpc.Service{Dbh: dbh} - aphgrpc.AssignFieldsToStructs(so, srv) - - return &ContentService{ - Service: srv, - request: req, - } -} - -func (s *ContentService) Healthz( - ctx context.Context, - r *jsonapi.HealthzIdRequest, -) (*empty.Empty, error) { - return &empty.Empty{}, nil -} - -func (s *ContentService) GetContentBySlug( - ctx context.Context, - r *content.ContentRequest, -) (*content.Content, error) { - ct, err := s.getResourceBySlug(r.Slug) - if err != nil { - return &content.Content{}, aphgrpc.HandleError(ctx, err) - } - - return ct, nil -} - -func (s *ContentService) GetContent( - ctx context.Context, - r *content.ContentIdRequest, -) (*content.Content, error) { - ct, err := s.getResource(r.Id) - if err != nil { - return &content.Content{}, aphgrpc.HandleError(ctx, err) - } - - return ct, nil -} - -func (s *ContentService) StoreContent( - ctx context.Context, - req *content.StoreContentRequest, -) (*content.Content, error) { - emptyCt := new(content.Content) - if err := req.Data.Attributes.Validate(); err != nil { - grpc.SetTrailer(ctx, aphgrpc.ErrDatabaseInsert) //nolint:errcheck - - return emptyCt, status.Error(codes.InvalidArgument, err.Error()) - } - // Check for presence of user - // by messaging through user service - reply, err := s.request.UserRequestWithContext( - context.Background(), - s.Topics["userExists"], - &pubsub.IdRequest{Id: req.Data.Attributes.CreatedBy}, - ) - if err != nil { - return emptyCt, aphgrpc.HandleGenericError(ctx, err) - } - if reply.Status != nil { - return emptyCt, aphgrpc.HandleMessagingError(ctx, reply.Status) - } - if !reply.Exist { - return emptyCt, aphgrpc.HandleNotFoundError( - ctx, - fmt.Errorf("user id %d not found", req.Data.Attributes.CreatedBy), - ) - } - txn, _ := s.Dbh.Begin() - defer txn.AutoRollback() //nolint:errcheck - // Check if namespace exists - var namespaceId int64 - err = txn.Select("namespace_id").From(namespaceDbTable). - Where("name = $1", req.Data.Attributes.Namespace). - QueryScalar(&namespaceId) - if err != nil { - if strings.Contains(err.Error(), "no rows") { - err := txn.InsertInto(namespaceDbTable). - Columns("name").Values(req.Data.Attributes.Namespace). - Returning("namespace_id").QueryScalar(&namespaceId) - if err != nil { - return emptyCt, aphgrpc.HandleInsertError(ctx, err) - } - } else { - return emptyCt, aphgrpc.HandleUpdateError(ctx, err) - } - } - - var ctId int64 - var atn dat.NullTime - dbct := s.createAttrTodbContentCore(req.Data.Attributes) - dbct.NamespaceId = namespaceId - ctcolumns := aphgrpc.GetDefinedTags(dbct, "db") - err = txn.InsertInto(contentDbTable). - Columns(ctcolumns...). - Record(dbct). - Returning(prKeyCol, "created_at"). - QueryScalar(&ctId, &atn) - if err != nil { - return &content.Content{}, aphgrpc.HandleInsertError(ctx, err) - } - - txn.Commit() //nolint:errcheck - grpc.SetTrailer(ctx, metadata.Pairs("method", "POST")) //nolint:errcheck - attr := s.dbCoreToResourceAttributes(dbct) - attr.CreatedAt = aphgrpc.NullToTime(atn) - attr.UpdatedAt = attr.CreatedAt - attr.Namespace = req.Data.Attributes.Namespace - - return s.buildResource(context.TODO(), ctId, attr), nil -} - -func (s *ContentService) UpdateContent( - ctx context.Context, - req *content.UpdateContentRequest, -) (*content.Content, error) { - result, err := s.existsResource(req.Id) - if err != nil { - return &content.Content{}, aphgrpc.HandleError(ctx, err) - } - if !result { - grpc.SetTrailer(ctx, aphgrpc.ErrNotFound) //nolint:errcheck - - return &content.Content{}, status.Error( - codes.NotFound, - fmt.Sprintf("id %d not found", req.Id), - ) - } - if err := req.Data.Attributes.Validate(); err != nil { - grpc.SetTrailer(ctx, aphgrpc.ErrDatabaseUpdate) //nolint:errcheck - - return &content.Content{}, status.Error( - codes.InvalidArgument, - err.Error(), - ) - } - dbct := &dbContentCore{} - txn, _ := s.Dbh.Begin() - defer txn.AutoRollback() //nolint:errcheck - err = txn.Update(contentDbTable). - Set("updated_by", req.Data.Attributes.UpdatedBy). - Set("content", req.Data.Attributes.Content). - Where(prKeyCol+"= $1", req.Id). - Returning(contentCols...). - QueryStruct(dbct) - if err != nil { - grpc.SetTrailer(ctx, aphgrpc.ErrDatabaseUpdate) //nolint:errcheck - - return &content.Content{}, status.Error(codes.Internal, err.Error()) - } - var namespace string - err = txn.Select("name").From(namespaceDbTable). - Where("namespace_id = $1", dbct.NamespaceId).QueryScalar(&namespace) - if err != nil { - grpc.SetTrailer(ctx, aphgrpc.ErrDatabaseUpdate) //nolint:errcheck - - return &content.Content{}, status.Error(codes.Internal, err.Error()) - } - txn.Commit() //nolint:errcheck - attr := s.dbCoreToResourceAttributes(dbct) - attr.Namespace = namespace - - return s.buildResource(context.TODO(), dbct.ContentId, attr), nil -} - -func (s *ContentService) DeleteContent( - ctx context.Context, - req *content.ContentIdRequest, -) (*empty.Empty, error) { - result, err := s.existsResource(req.Id) - if err != nil { - return &empty.Empty{}, aphgrpc.HandleError(ctx, err) - } - if !result { - grpc.SetTrailer(ctx, aphgrpc.ErrNotFound) //nolint:errcheck - - return &empty.Empty{}, status.Error( - codes.NotFound, - fmt.Sprintf("id %d not found", req.Id), - ) - } - txn, _ := s.Dbh.Begin() - defer txn.AutoRollback() //nolint:errcheck - _, err = txn.DeleteFrom(contentDbTable). - Where(prKeyCol+" = $1", req.Id). - Exec() - if err != nil { - grpc.SetTrailer(ctx, aphgrpc.ErrDatabaseDelete) //nolint:errcheck - - return &empty.Empty{}, status.Error(codes.Internal, err.Error()) - } - txn.Commit() //nolint:errcheck - - return &empty.Empty{}, nil -} - -func (s *ContentService) existsResource(idx int64) (bool, error) { - resp, err := s.Dbh.Select( - fmt.Sprintf("%s.%s", contentDbTable, prKeyCol), - ).From( - contentDbTable, - ).Where( - fmt.Sprintf("%s.%s = $1", contentDbTable, prKeyCol), - idx, - ).Exec() - if err != nil { - return false, fmt.Errorf("error in database query %s", err) - } - if resp.RowsAffected != 1 { - return false, nil - } - - return true, nil -} - -// -- Functions that queries the storage and generates resource object. -func (s *ContentService) getResource(idx int64) (*content.Content, error) { - dct := &dbContent{} - err := s.Dbh.Select( - fmt.Sprintf("%s.*", contentDbTable), - fmt.Sprintf("%s.name namespace", namespaceDbTable), - ).From( - fmt.Sprintf( - "%s JOIN %s ON %s.namespace_id = %s.namespace_id", - contentDbTable, namespaceDbTable, contentDbTable, namespaceDbTable, - ), - ).Where( - fmt.Sprintf("%s.%s = $1", contentDbTable, prKeyCol), - idx, - ).QueryStruct(dct) - if err != nil { - return &content.Content{}, fmt.Errorf("error in database query %s", err) - } - - return s.buildResource( - context.TODO(), - idx, - s.dbToResourceAttributes(dct), - ), nil -} - -func (s *ContentService) getResourceBySlug( - slug string, -) (*content.Content, error) { - dct := &dbContent{} - err := s.Dbh.Select( - fmt.Sprintf("%s.*", contentDbTable), - fmt.Sprintf("%s.name namespace", namespaceDbTable), - ).From( - fmt.Sprintf( - "%s JOIN %s ON %s.namespace_id = %s.namespace_id", - contentDbTable, namespaceDbTable, contentDbTable, namespaceDbTable, - ), - ).Where( - fmt.Sprintf("%s.slug = $1", contentDbTable), - slug, - ).QueryStruct(dct) - if err != nil { - return &content.Content{}, fmt.Errorf("error in database query %s", err) - } - - return s.buildResource( - context.TODO(), - dct.ContentId, - s.dbToResourceAttributes(dct), - ), nil -} - -// -- Functions that builds up the various parts of the final content resource -// objects. -func (s *ContentService) buildResourceData( - ctx context.Context, - idn int64, - attr *content.ContentAttributes, -) *content.ContentData { - return &content.ContentData{ - Attributes: attr, - Id: idn, - Type: s.GetResourceName(), - Links: &jsonapi.Links{ - Self: s.GenResourceSelfLink(ctx, idn), - }, - } -} - -func (s *ContentService) buildResource( - ctx context.Context, - idn int64, - attr *content.ContentAttributes, -) *content.Content { - return &content.Content{ - Data: s.buildResourceData(ctx, idn, attr), - Links: &jsonapi.Links{ - Self: s.GenResourceSelfLink(ctx, idn), - }, - } -} - -// Functions that generates resource objects or parts of it from database mapped -// objects. -func (s *ContentService) dbToResourceAttributes( - dct *dbContent, -) *content.ContentAttributes { - ctn, _ := dct.Content.Interpolate() - - return &content.ContentAttributes{ - Name: aphgrpc.NullToString(dct.Name), - Slug: aphgrpc.NullToString(dct.Slug), - CreatedBy: aphgrpc.NullToInt64(dct.CreatedBy), - UpdatedBy: aphgrpc.NullToInt64(dct.UpdatedBy), - Namespace: aphgrpc.NullToString(dct.Namespace), - CreatedAt: aphgrpc.NullToTime(dct.CreatedAt), - UpdatedAt: aphgrpc.NullToTime(dct.UpdatedAt), - Content: ctn, - } -} - -func (s *ContentService) dbCoreToResourceAttributes( - dct *dbContentCore, -) *content.ContentAttributes { - ctn, _ := dct.Content.Interpolate() - - return &content.ContentAttributes{ - Name: aphgrpc.NullToString(dct.Name), - Slug: aphgrpc.NullToString(dct.Slug), - CreatedBy: aphgrpc.NullToInt64(dct.CreatedBy), - UpdatedBy: aphgrpc.NullToInt64(dct.UpdatedBy), - CreatedAt: aphgrpc.NullToTime(dct.CreatedAt), - UpdatedAt: aphgrpc.NullToTime(dct.UpdatedAt), - Content: ctn, - } -} - -func (s *ContentService) createAttrTodbContentCore( - attr *content.NewContentAttributes, -) *dbContentCore { - return &dbContentCore{ - Name: dat.NullStringFrom(attr.Name), - CreatedBy: dat.NullInt64From(attr.CreatedBy), - UpdatedBy: dat.NullInt64From(attr.CreatedBy), - Content: dat.JSONFromString(attr.Content), - Slug: dat.NullStringFrom( - slug( - fmt.Sprintf("%s %s", attr.Namespace, attr.Name), - ), - ), - } -} - -func slug(s string) string { - return strings.Trim( - noncharReg.ReplaceAllString(strings.ToLower(s), "-"), - "-", - ) -} diff --git a/server/content_test.go b/server/content_test.go deleted file mode 100644 index 3ad376c..0000000 --- a/server/content_test.go +++ /dev/null @@ -1,394 +0,0 @@ -package server - -import ( - "context" - "database/sql" - "encoding/json" - "errors" - "fmt" - "io/ioutil" - "log" - "math/rand" - "net" - "os" - "testing" - "time" - - pb "github.com/dictyBase/go-genproto/dictybaseapis/content" - "github.com/dictyBase/go-genproto/dictybaseapis/pubsub" - _ "github.com/jackc/pgx/stdlib" - "github.com/pressly/goose" - "google.golang.org/grpc" - "google.golang.org/grpc/credentials/insecure" - runner "gopkg.in/mgutz/dat.v2/sqlx-runner" - "gopkg.in/src-d/go-git.v4" -) - -var dbh *sql.DB - -var schemaRepo string = "https://github.com/dictybase-docker/dictycontent-schema" - -var pgAddr = fmt.Sprintf( - "%s:%s", - os.Getenv("POSTGRES_HOST"), - os.Getenv("POSTGRES_PORT"), -) -var pgConn = fmt.Sprintf( - "postgres://%s:%s@%s/%s?sslmode=disable", - os.Getenv( - "POSTGRES_USER", - ), - os.Getenv("POSTGRES_PASSWORD"), - pgAddr, - os.Getenv("POSTGRES_DB"), -) - -const ( - port = ":9596" - schema = "content" -) - -type fakeRequest struct{} - -func (f *fakeRequest) UserRequest( - s string, - r *pubsub.IdRequest, - t time.Duration, -) (*pubsub.UserReply, error) { - return &pubsub.UserReply{Exist: true}, nil -} - -func (f *fakeRequest) UserRequestWithContext( - ctx context.Context, - s string, - r *pubsub.IdRequest, -) (*pubsub.UserReply, error) { - return &pubsub.UserReply{Exist: true}, nil -} - -type ContentJSON struct { - Paragraph string `json:"paragraph"` - Text string `json:"text"` -} - -func CheckPostgresEnv() error { - envs := []string{ - "POSTGRES_USER", - "POSTGRES_PASSWORD", - "POSTGRES_DB", - "POSTGRES_HOST", - } - for _, e := range envs { - if len(os.Getenv(e)) == 0 { - return fmt.Errorf("env %s is not set", e) - } - } - - return nil -} - -type TestPostgres struct { - DB *sql.DB -} - -func NewTestPostgresFromEnv() (*TestPostgres, error) { - pgt := new(TestPostgres) - if err := CheckPostgresEnv(); err != nil { - return pgt, err - } - dbh, err := sql.Open("pgx", pgConn) - if err != nil { - return pgt, fmt.Errorf("error in opening db connection %s", err) - } - timeout, err := time.ParseDuration("28s") - if err != nil { - return pgt, fmt.Errorf("error in parsing time %s", err) - } - t1 := time.Now() - for { - if err := dbh.Ping(); err != nil { - if time.Since(t1).Seconds() > timeout.Seconds() { - return pgt, errors.New("timed out, no connection retrieved") - } - - continue - } - - break - } - pgt.DB = dbh - - return pgt, nil -} - -func cloneDbSchemaRepo() (string, error) { - path, err := ioutil.TempDir("", "content") - if err != nil { - return path, fmt.Errorf("error in creating temp dir %s", err) - } - _, err = git.PlainClone(path, false, &git.CloneOptions{URL: schemaRepo}) - if err != nil { - return path, fmt.Errorf("error in cloing to path %s", err) - } - - return path, nil -} - -func runGRPCServer(db *sql.DB) { - dbh := runner.NewDB(db, "postgres") - grpcS := grpc.NewServer() - pb.RegisterContentServiceServer( - grpcS, - NewContentService(dbh, &fakeRequest{}), - ) - lis, err := net.Listen("tcp", "localhost"+port) - if err != nil { - log.Fatalf("error listening to grpc port %s", err) - } - log.Printf("starting grpc server at port %s", port) - if err := grpcS.Serve(lis); err != nil { - log.Fatalf("error serving %s", err) - } -} - -func TestMain(m *testing.M) { - pgt, err := NewTestPostgresFromEnv() - if err != nil { - log.Fatalf( - "unable to construct new NewTestPostgresFromEnv instance %s", - err, - ) - } - dbh = pgt.DB - // create schema for this application - _, err = dbh.Exec(fmt.Sprintf("CREATE SCHEMA %s", schema)) - if err != nil { - log.Fatal(err) - } - _, err = dbh.Exec(fmt.Sprintf("SET search_path TO %s", schema)) - if err != nil { - log.Fatal(err) - } - dir, err := cloneDbSchemaRepo() - defer os.RemoveAll(dir) - if err != nil { - log.Printf("issue with cloning %s repo %s\n", schemaRepo, err) - - return - } - if err := goose.Up(dbh, dir); err != nil { - log.Printf("issue with running database migration %s\n", err) - - return - } - go runGRPCServer(dbh) - os.Exit(m.Run()) //nolint:gocritic -} - -func NewStoreContent(name string) *pb.StoreContentRequest { - cdata, _ := json.Marshal(ContentJSON{ - Paragraph: "paragraph", - Text: "text", - }) - - return &pb.StoreContentRequest{ - Data: &pb.StoreContentRequest_Data{ - Type: "contents", - Attributes: &pb.NewContentAttributes{ - Name: name, - CreatedBy: rand.Int63n(100) + 1, - Content: string(cdata), - Namespace: "stockcenter", - }, - }, - } -} - -func TestCreate(t *testing.T) { - ctx, cancel := context.WithTimeout(context.Background(), 5*time.Second) - defer cancel() - conn, err := grpc.DialContext( - ctx, - "localhost"+port, - grpc.WithTransportCredentials(insecure.NewCredentials()), - grpc.WithBlock(), - ) - if err != nil { - t.Fatalf("could not connect to grpc server %s\n", err) - } - defer conn.Close() - client := pb.NewContentServiceClient(conn) - nct, err := client.StoreContent( - context.Background(), - NewStoreContent("catalog"), - ) - if err != nil { - t.Fatalf("could not store the content %s\n", err) - } - if nct.Data.Id < 1 { - t.Fatalf("No id attribute value %d", nct.Data.Id) - } - if nct.Links.Self != nct.Data.Links.Self { - t.Fatalf( - "top link %s does not match resource link %s", - nct.Links.Self, - nct.Data.Links.Self, - ) - } - if nct.Data.Attributes.Slug != "stockcenter-catalog" { - t.Fatalf( - "expected slug did not match with %s", - nct.Data.Attributes.Slug, - ) - } -} - -func TestGetBySlug(t *testing.T) { - conn, err := grpc.Dial( - "localhost"+port, - grpc.WithTransportCredentials(insecure.NewCredentials()), - ) - if err != nil { - t.Fatalf("could not connect to grpc server %s\n", err) - } - defer conn.Close() - client := pb.NewContentServiceClient(conn) - nct, err := client.StoreContent( - context.Background(), - NewStoreContent("payment information"), - ) - if err != nil { - t.Fatalf("could not store the content %s\n", err) - } - ctgs, err := client.GetContentBySlug( - context.Background(), - &pb.ContentRequest{Slug: "stockcenter-payment-information"}, - ) - if err != nil { - t.Fatalf("could not retrieve content by %d Id", nct.Data.Id) - } - if nct.Data.Id != ctgs.Data.Id { - t.Errorf("expected id %d did not match %d", ctgs.Data.Id, nct.Data.Id) - } - if ctgs.Data.Attributes.Slug != "stockcenter-payment-information" { - t.Fatalf("expected slug did not match %s", ctgs.Data.Attributes.Slug) - } -} - -func TestGet(t *testing.T) { - conn, err := grpc.Dial( - "localhost"+port, - grpc.WithTransportCredentials(insecure.NewCredentials()), - ) - if err != nil { - t.Fatalf("could not connect to grpc server %s\n", err) - } - defer conn.Close() - client := pb.NewContentServiceClient(conn) - nct, err := client.StoreContent( - context.Background(), - NewStoreContent("order information"), - ) - if err != nil { - t.Fatalf("could not store the content %s\n", err) - } - ctg, err := client.GetContent( - context.Background(), - &pb.ContentIdRequest{Id: nct.Data.Id}, - ) - if err != nil { - t.Fatalf("could not retrieve content by %d Id", nct.Data.Id) - } - if nct.Data.Id != ctg.Data.Id { - t.Errorf("expected id %d did not match %d", ctg.Data.Id, nct.Data.Id) - } - if ctg.Data.Attributes.Slug != "stockcenter-order-information" { - t.Fatalf("expected slug did not match %s", ctg.Data.Attributes.Slug) - } -} - -func TestUpdate(t *testing.T) { - conn, err := grpc.Dial( - "localhost"+port, - grpc.WithTransportCredentials(insecure.NewCredentials()), - ) - if err != nil { - t.Fatalf("could not connect to grpc server %s\n", err) - } - defer conn.Close() - client := pb.NewContentServiceClient(conn) - nct, err := client.StoreContent( - context.Background(), - NewStoreContent("plasmid catalog"), - ) - if err != nil { - t.Fatalf("could not store the content %s\n", err) - } - uct := &pb.UpdateContentRequest{ - Id: nct.Data.Id, - Data: &pb.UpdateContentRequest_Data{ - Type: nct.Data.Type, - Id: nct.Data.Id, - Attributes: &pb.ExistingContentAttributes{ - UpdatedBy: nct.Data.Attributes.UpdatedBy + 5, - Content: nct.Data.Attributes.Content, - }, - }, - } - ctu, err := client.UpdateContent(context.Background(), uct) - if err != nil { - t.Fatalf("could not update content %s", err) - } - if ctu.Data.Attributes.Namespace != nct.Data.Attributes.Namespace { - t.Fatalf( - "expected namespace %s did not match %s", - nct.Data.Attributes.Namespace, - ctu.Data.Attributes.Namespace, - ) - } - if ctu.Data.Attributes.UpdatedBy != nct.Data.Attributes.UpdatedBy+5 { - t.Fatalf( - "expected updated_by %d did not match %d", - nct.Data.Attributes.UpdatedBy+5, - ctu.Data.Attributes.UpdatedBy, - ) - } - cjson := &ContentJSON{} - err = json.Unmarshal([]byte(ctu.Data.Attributes.Content), cjson) - if err != nil { - t.Fatalf("unable to decode content json %s\n", err) - } - if cjson.Text != "text" { - t.Fatalf( - "expected json field text %s did not match %s", - "text", - cjson.Text, - ) - } -} - -func TestDelete(t *testing.T) { - conn, err := grpc.Dial( - "localhost"+port, - grpc.WithTransportCredentials(insecure.NewCredentials()), - ) - if err != nil { - t.Fatalf("could not connect to grpc server %s\n", err) - } - defer conn.Close() - client := pb.NewContentServiceClient(conn) - nct, err := client.StoreContent( - context.Background(), - NewStoreContent("deposit information"), - ) - if err != nil { - t.Fatalf("could not store the content %s\n", err) - } - _, err = client.DeleteContent( - context.Background(), - &pb.ContentIdRequest{Id: nct.Data.Id}, - ) - if err != nil { - t.Fatalf("could not delete content by %d Id", nct.Data.Id) - } -} diff --git a/validate/validate.go b/validate/validate.go deleted file mode 100644 index c3dc2be..0000000 --- a/validate/validate.go +++ /dev/null @@ -1,22 +0,0 @@ -package validate - -import ( - "fmt" - - "github.com/urfave/cli" -) - -const ExitError = 2 - -func ValidateServerArgs(c *cli.Context) error { - for _, p := range []string{"dictycontent-pass", "dictycontent-db", "dictycontent-user"} { - if len(c.String(p)) == 0 { - return cli.NewExitError( - fmt.Sprintf("argument %s is missing", p), - ExitError, - ) - } - } - - return nil -}