04_tracer_SS3.def

BootStrap: docker
From: teichlab/tracer:latest

%environment
  export IGDATA=/ncbi-igblast-1.7.0/bin
  export TRACER_CONF=./bin/tracer.conf

%runscript
    ./src/04_assemble_trimmed_cells.sh "$@"

%labels
    Author: Juan Sebastian Diaz Boada
    juan.sebastian.diaz.boada@ki.se

%help
    Calls TraCeR assemble over the trimmed fastq files for all cells of a plate.

    Usage
    -----

    ./04_tracer_SS3.sif <path/to/trimmed_fastq/> <path/to/output> <nodes> <loci>

    See ./04_tracer_SS3.sif --help for more info.