.gitignore

########################################################################
#
# Based on DIME .gitignore template. Follow the instructions in the URL
# below to set up this template in your own repository
# https://github.com/worldbank/dime-github-trainings/tree/master/GitHub-resources/DIME-GitHub-Templates
#
# Note that if you are using GitKraken, you need to use version 5.x or more
# recent for this template to work properly
#
########################################################################

#######################
# Start by ignoring everything, and below we are explicitly saying
# what to not ignore
*

#######################
# List of files with GitHub functionality anywhere in the repo
# that we do not want to ignore

# These files include GitHub settings
!.gitignore
!.gitattributes

# Keep markdown files used for documentation on GitHub
!README.md
!CONTRIBUTING.md
!LICENSE*

#######################
# For performance reasons, if a folder is already ignored, then
# GitHub does not check the content for that folder for matches
# with additional rules. The line below includes folder in the
# top folder (but not their content), so that anything matching
# the rules below will still not be ignored.
!*/

#######################
# The following file types are code that should always be
# included no matter where in the repository folder they are
# located unless you explicitly ignore that folder

# Stata
!/**/*.do
!/**/*.ado

# R
!/**/*.R
!/**/*.Rmd
!/**/*.Rproj

# LaTeX
!/**/*.tex
!/**/*.bib

# Python
!/**/*.py
!/**/*.ipynb
# Still ignore .ipynb files in checkpoint folders
.ipynb_checkpoints
.eggs/*
build/*

# Matlab
!/**/*.m

# Markdown
!/**/*.md

# Julia
!/**/*.jl

# Java
!/**/*.java
!/**/*.jar
!/**/pom.xml

# Yaml
!/**/*.yml
!/**/*.yaml

######################
# Including some of the input data which corresponds to important parameters
!/configs/*.txt
!/configs/*.csv
/dataForSophie/*

!/data/configs/*.txt
!/data/configs/*.csv
!/data/verification/*.txt
!/data/verification/*.csv
/data/verification/census*

!/Protecs/src/main/resources/*

#######################
# Include some additional file formats in any output folder. You might have
# to change the name of the Output folder to whatever it is called in your
# project, but we strongly recommend that you only include these files in
# a subset of the folders where you are certain no private data is ever stored.
##!/**/Output/**/*.txt ## there are a few too many of these right now so commenting out
##!/**/Output/**/*.csv ## there are a few too many of these right now so commenting out
!/docs/**/*.png
!/docs/**/*.gif

!/**/Output/**/*.xml
!/**/Output/**/*.eps
!/**/Output/**/*.svg

#######################
# Include all the files with passwords or tokens here. All files named
# password or passwords are with this template ignored no matter which
# format you are using. Additionally, all content in any folder called
# password or passwords are also ignored. NOTE that your project might be
# using different names and then you must edit the lines below accordingly.
password.*
passwords.*
password/
passwords/

.DS_Store
Protecs/src/main/java/uk/ac/ucl/protecs/sim/wardLevelRuns.java
Protecs/src/main/resources/census_5perc_multiStatMultiDist.csv
Protecs/src/main/resources/decreasedTransitionMobilityRates_multiDist.csv
Protecs/src/main/resources/dailyDistrictTransitionProb_preLockdown_multiDist.csv
Protecs/src/main/resources/new_census_5perc_multiStatMultiDist.csv
Protecs/src/main/resources/dailyDistrictTransitionsProb_1Dist.csv
Protecs/src/main/resources/abm_092320_5_perc_080222_ver1.csv
Protecs/src/main/resources/params_national_run.txt
Protecs/src/main/resources/params_district_run.txt
Protecs/src/main/resources/province_OD.csv
Protecs/src/main/resources/params_province_run.txt
Protecs/src/main/resources/province_census.csv
Protecs/src/main/resources/ipums_5p_wp_bubbles_comb_teacher_students.csv
Protecs/src/main/resources/census_ipums.csv
Protecs/src/main/resources/province_line_list.txt
Protecs/src/main/resources/census_ipums_5perc.csv
Protecs/src/main/resources/ipums_radiation_formatted.csv