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Hello. I am getting this error message in the [Diffs::initialize] section of the nDemes log file when I try to run EEMS.
Error: checking if the dissimilarity matrix is an nIndiv×nIndiv square matrix. The details are as follows
[Diffs::initialize]
Error: Check that the dissimilarity matrix is a square nIndiv-by-nIndiv matrix.
I checked the Diffs file and it is a sample *sample matrix no problem. Is it caused by too many missing loci in the vcf file? Or is it some other reason?
The text was updated successfully, but these errors were encountered:
I am having a similar issue so i thought i'd add my experience.
When I run eems_snps with the test data barrier-schemeX-nIndiv300-nSites3000 the software starts alright (see output below, manually stopped after 5000 iterations)
When I use my own data, i get the following error:
I produced my .diffs matrix with bed2diffs. When comparing to the example dataset I can't find any difference in terms of the format:
First 2 rows and 5 columns:
Last 2 rows and 3 colums:
Number of rows and columns:
Any hints as to where the problem might lie would be appreciated
Hello. I am getting this error message in the [Diffs::initialize] section of the nDemes log file when I try to run EEMS.
Error: checking if the dissimilarity matrix is an nIndiv×nIndiv square matrix. The details are as follows
[Diffs::initialize]
Error: Check that the dissimilarity matrix is a square nIndiv-by-nIndiv matrix.
I checked the Diffs file and it is a sample *sample matrix no problem. Is it caused by too many missing loci in the vcf file? Or is it some other reason?
The text was updated successfully, but these errors were encountered: