diff --git a/src/test/java/org/cbioportal/persistence/mybatisclickhouse/GenomicDataFilterTest.java b/src/test/java/org/cbioportal/persistence/mybatisclickhouse/GenomicDataFilterTest.java index 87b6c101800..1f4d2cebbb9 100644 --- a/src/test/java/org/cbioportal/persistence/mybatisclickhouse/GenomicDataFilterTest.java +++ b/src/test/java/org/cbioportal/persistence/mybatisclickhouse/GenomicDataFilterTest.java @@ -42,7 +42,7 @@ public void getCNACounts() { studyViewFilter.setStudyIds(List.of(STUDY_TCGA_PUB)); GenomicDataFilter genomicDataFilterCNA = new GenomicDataFilter("AKT1", "cna"); - List actualCountsCNA = studyViewMapper.getCNACounts(StudyViewFilterHelper.build(studyViewFilter, null), List.of(genomicDataFilterCNA)); + List actualCountsCNA = studyViewMapper.getCNACounts(StudyViewFilterHelper.build(studyViewFilter, null, null), List.of(genomicDataFilterCNA)); List expectedCountsCNA = List.of( new GenomicDataCountItem("AKT1", "cna", List.of( new GenomicDataCount("Homozygously deleted", "-2", 2), @@ -58,7 +58,7 @@ public void getCNACounts() { .isEqualTo(expectedCountsCNA); GenomicDataFilter genomicDataFilterGISTIC = new GenomicDataFilter("AKT1", "gistic"); - List actualCountsGISTIC = studyViewMapper.getCNACounts(StudyViewFilterHelper.build(studyViewFilter, null), List.of(genomicDataFilterGISTIC)); + List actualCountsGISTIC = studyViewMapper.getCNACounts(StudyViewFilterHelper.build(studyViewFilter, null, null), List.of(genomicDataFilterGISTIC)); List expectedCountsGISTIC = List.of( new GenomicDataCountItem("AKT1", "gistic", List.of( new GenomicDataCount("Homozygously deleted", "-2", 2), @@ -80,7 +80,7 @@ public void getMutationCounts() { studyViewFilter.setStudyIds(List.of(STUDY_TCGA_PUB)); GenomicDataFilter genomicDataFilterMutation = new GenomicDataFilter("AKT1", "cna"); - Map actualMutationCounts = studyViewMapper.getMutationCounts(StudyViewFilterHelper.build(studyViewFilter, null), genomicDataFilterMutation); + Map actualMutationCounts = studyViewMapper.getMutationCounts(StudyViewFilterHelper.build(studyViewFilter, null, null), genomicDataFilterMutation); Map expectedMutationCounts = new HashMap<>(); expectedMutationCounts.put("mutatedCount", 2); expectedMutationCounts.put("notMutatedCount", 2); @@ -97,7 +97,7 @@ public void getMutationCountsByType() { studyViewFilter.setStudyIds(List.of(STUDY_TCGA_PUB)); GenomicDataFilter genomicDataFilterMutation = new GenomicDataFilter("AKT1", "mutation"); - List actualMutationCountsByType = studyViewMapper.getMutationCountsByType(StudyViewFilterHelper.build(studyViewFilter, null), List.of(genomicDataFilterMutation)); + List actualMutationCountsByType = studyViewMapper.getMutationCountsByType(StudyViewFilterHelper.build(studyViewFilter, null, null), List.of(genomicDataFilterMutation)); List expectedMutationCountsByType = List.of( new GenomicDataCountItem("AKT1", "mutations", List.of( new GenomicDataCount("nonsense mutation", "nonsense_mutation", 1, 1),