From 0df8d52272b0e37c26012db077d9d6b131f05557 Mon Sep 17 00:00:00 2001 From: dlizcano Date: Tue, 21 May 2024 12:52:07 -0500 Subject: [PATCH] badge updated --- R/search_mammalcol.R | 4 ++ README.Rmd | 4 ++ README.md | 54 +++++++++++++++++-- data-raw/convert_tables.R | 3 ++ docs/404.html | 4 +- docs/LICENSE-text.html | 4 +- docs/LICENSE.html | 4 +- docs/articles/index.html | 4 +- docs/articles/mammalcol.html | 4 +- docs/authors.html | 6 +-- docs/getting_started.html | 4 +- docs/index.html | 77 ++++++++++++++++++--------- docs/news/index.html | 4 +- docs/pkgdown.yml | 6 +-- docs/reference/colmap.html | 4 +- docs/reference/distribution.html | 4 +- docs/reference/index.html | 4 +- docs/reference/mammalcol-package.html | 4 +- docs/reference/mammalmap.html | 4 +- docs/reference/pipe.html | 4 +- docs/reference/search_mammalcol.html | 4 +- docs/reference/sp_by_depto.html | 4 +- docs/reference/taxon.html | 4 +- 23 files changed, 150 insertions(+), 68 deletions(-) diff --git a/R/search_mammalcol.R b/R/search_mammalcol.R index 38c0879..56ce12c 100644 --- a/R/search_mammalcol.R +++ b/R/search_mammalcol.R @@ -27,6 +27,10 @@ #' @export search_mammalcol <- function(splist, max_distance = 0.2) { # Defensive function here, check for user input errors + if (missing(splist)) { + stop("Argument splist was not defined") + } + if (is.factor(splist)) { splist <- as.character(splist) } diff --git a/README.Rmd b/README.Rmd index 9b2f633..311e712 100644 --- a/README.Rmd +++ b/README.Rmd @@ -254,10 +254,14 @@ sp_by_depto <- function(states, type = c("any", "only", "all"), taxa = NULL) { [![R-CMD-check](https://github.com/dlizcano/mammalcol/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/dlizcano/mammalcol/actions/workflows/R-CMD-check.yaml) [![Codecov test coverage](https://codecov.io/gh/dlizcano/mammalcol/branch/main/graph/badge.svg)](https://app.codecov.io/gh/dlizcano/mammalcol?branch=main) [![CRAN status](https://www.r-pkg.org/badges/version/mammalcol)](https://CRAN.R-project.org/package=mammalcol) +[![lifecycle](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable) +[![size](https://img.shields.io/github/languages/code-size/dlizcano/mammalcol.svg)](https://github.com/dlizcano/mammalcol) The goal of mammalcol is to allow easy access to the List of Mammal Species of Colombia. +Researchers can explore Colombia's amazing variety of mammals using the mammalcol R package. This package includes information on 548 mammal species, making Colombia one of the world leaders in mammal diversity. The data comes from the latest "Checklist of the mammals (Mammalia) of Colombia" by [Ramírez-Chaves et al (2021)](https://doi.org/10.47603/mano.v7n2.253). But It's important to remember that how scientists classify mammals keeps changing constantly, so the information in this package has been updated with the checklist [Mamíferos de Colombia](https://doi.org/10.15472/kl1whs), which is published and updated regularly by the Colombian Mammal Society. + ## Installation You can install the development version of mammalcol from [GitHub](https://github.com/dlizcano/mammalcol) with: diff --git a/README.md b/README.md index 8a637df..4c5c7c3 100644 --- a/README.md +++ b/README.md @@ -10,11 +10,24 @@ coverage](https://codecov.io/gh/dlizcano/mammalcol/branch/main/graph/badge.svg)](https://app.codecov.io/gh/dlizcano/mammalcol?branch=main) [![CRAN status](https://www.r-pkg.org/badges/version/mammalcol)](https://CRAN.R-project.org/package=mammalcol) +[![lifecycle](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable) +[![size](https://img.shields.io/github/languages/code-size/dlizcano/mammalcol.svg)](https://github.com/dlizcano/mammalcol) The goal of mammalcol is to allow easy access to the List of Mammal Species of Colombia. +Researchers can explore Colombia’s amazing variety of mammals using the +mammalcol R package. This package includes information on 548 mammal +species, making Colombia one of the world leaders in mammal diversity. +The data comes from the latest “Checklist of the mammals (Mammalia) of +Colombia” by [Ramírez-Chaves et al +(2021)](https://doi.org/10.47603/mano.v7n2.253). But It’s important to +remember that how scientists classify mammals keeps changing constantly, +so the information in this package has been updated with the checklist +[Mamíferos de Colombia](https://doi.org/10.15472/kl1whs), which is +published and updated regularly by the Colombian Mammal Society. + ## Installation You can install the development version of mammalcol from @@ -25,6 +38,19 @@ You can install the development version of mammalcol from devtools::install_github("dlizcano/mammalcol") ``` +## load library + +``` r + +library(mammalcol) +#> This is mammalcol 0.2.3 +#> +#> Attaching package: 'mammalcol' +#> The following objects are masked _by_ '.GlobalEnv': +#> +#> mammalmap, search_mammalcol, sp_by_depto +``` + ## Example ### Search database @@ -68,7 +94,7 @@ search_mammalcol(splist) #> distribution #> 1 Antioquia | Chocó | Córdoba #> 2 Antioquia | Cauca | Cundinamarca | Huila | Meta | Nariño | Quindío | Risaralda | Tolima | Valle del Cauca | Caldas | Caquetá | Putumayo -#> 3 Antioquia | Amazonas | Arauca | Caquetá | Cauca | Cesar | Córdoba | Guainia | La Guajira | Meta | Magdalena | Vaupés | Vichada | Guaviare | Casanare | Norte de Santander | Putumayo +#> 3 Antioquia | Amazonas | Arauca | Caquetá | Cauca | Cesar | Córdoba | Guainía | La Guajira | Meta | Magdalena | Vaupés | Vichada | Guaviare | Casanare | Norte de Santander | Putumayo #> 4 Cauca | Huila | Nariño | Risaralda | Quindío | Tolima | Valle del Cauca #> source endemic #> 1 Proceedings of the United States National Museum 103:465-496 No @@ -129,7 +155,7 @@ search_mammalcol(splist) #> 2 1 EN A2cd B1ab (i; ii; iii; iv; v) \r\n #> 3 1 EN A2cd+ B1ab (i,ii,iii)+ B2ab (i, ii, iii) #> distribution -#> 1 Antioquia | Amazonas | Arauca | Caquetá | Cauca | Cesar | Córdoba | Guainia | La Guajira | Meta | Magdalena | Vaupés | Vichada | Guaviare | Casanare | Norte de Santander | Putumayo +#> 1 Antioquia | Amazonas | Arauca | Caquetá | Cauca | Cesar | Córdoba | Guainía | La Guajira | Meta | Magdalena | Vaupés | Vichada | Guaviare | Casanare | Norte de Santander | Putumayo #> 2 Cauca | Huila | Nariño | Risaralda | Quindío | Tolima | Valle del Cauca #> 3 Antioquia | Chocó | Córdoba #> source endemic @@ -265,7 +291,7 @@ head(occ.any) #> 3 Norte de Santander #> 4 Magdalena | Norte de Santander #> 5 Amazonas | Caquetá | Casanare | Huila | Meta | Putumayo | Vaupés | Guaviare | Arauca | Guainía -#> 6 Cundinamarca | Norte de Santander | Santander | Guania | Meta | Arauca | Tolima +#> 6 Cundinamarca | Norte de Santander | Santander | Guainía | Meta | Arauca | Tolima ``` The argument type = “only” retrieves species present only in that @@ -298,14 +324,32 @@ head(occ.bats) #> 2 Arauca | Caldas | Norte de Santander | Tolima | Putumayo | Guaviare | Amazonas | Antioquia | Atlántico | Caquetá | Casanare | Guainía | Meta | Vichada #> 3 Amazonas | Arauca | Boyacá | Casanare | Meta | Vichada | Caquetá | Cundinamarca | Norte de Santander | Putumayo | Guainía | Sucre #> 4 Caldas | Cauca | Quindío | Risaralda | Amazonas | Caquetá | Guaviare | Meta | Putumayo | Antioquia | Arauca | Casanare | Chocó | Córdoba | Guainía | Magdalena | Nariño | Norte de Santander | Sucre | Tolima | Valle del Cauca | Vaupés | Vichada -#> 5 Caldas | Cauca | Cundinamarca | Quindío | Risaralda | Amazonas | Caqueta | Putumayo | Antioquia | Arauca | Casanare | Cesar | Chocó | Guainía | Huila | Magdalena | Nariño | Norte de Santander | Putumayo | Tolima | Valle del Cauca -#> 6 Cundinamarca | Magdalena | Amazonas | Caquetá | Guaviare | Arauca | Casanare | Chocó | Cordoba | Guainia | Norte de Santander | Tolima +#> 5 Caldas | Cauca | Cundinamarca | Quindío | Risaralda | Amazonas | Caquetá | Putumayo | Antioquia | Arauca | Casanare | Cesar | Chocó | Guainía | Huila | Magdalena | Nariño | Norte de Santander | Putumayo | Tolima | Valle del Cauca +#> 6 Cundinamarca | Magdalena | Amazonas | Caquetá | Guaviare | Arauca | Casanare | Chocó | Córdoba | Guainía | Norte de Santander | Tolima ``` ### Sugested citation ``` r citation("mammalcol") +#> To cite mammalcol package in publications use: +#> +#> Lizcano, DJ. et al., (2024). mammalcol: Access to the List of Mammal +#> Species of Colombia. R package version 0.2.2 +#> +#> A BibTeX entry for LaTeX users is +#> +#> @Manual{, +#> title = {mammalcol: Access to the List of Mammal Species of Colombia}, +#> author = {Diego J. Lizcano and Baltazar González and Alejandra Bonilla-Sánchez and Andres F. Suárez-Castro and Camilo A. Calderón-Acevedo}, +#> year = {2024}, +#> note = {R data package version 0.2.2}, +#> url = {https://dlizcano.github.io/mammalcol/}, +#> } +#> +#> To cite just the original mammalcol dataset, please use: Mammals of +#> Colombia / Mamíferos de Colombia. SCMas: , but +#> keep in mind taxonomy is dinamic and have changed. ``` Lizcano, DJ. (2024). mammalcol: Access to the List of Mammal Species of diff --git a/data-raw/convert_tables.R b/data-raw/convert_tables.R index 46ba8e9..7a74eb2 100644 --- a/data-raw/convert_tables.R +++ b/data-raw/convert_tables.R @@ -253,6 +253,9 @@ mammalmap <- function(species, legend=TRUE){ + + + ### package flow # 0. load pakgdown, usethis # 1 load data objects diff --git a/docs/404.html b/docs/404.html index 93393b9..8c5b066 100644 --- a/docs/404.html +++ b/docs/404.html @@ -12,7 +12,7 @@ - + @@ -121,7 +121,7 @@

Page not found (404)

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index eae7f53..d5661bc 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -1,5 +1,5 @@ -License • mammalcolLicense • mammalcol @@ -89,7 +89,7 @@

License

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/docs/LICENSE.html b/docs/LICENSE.html index 4a1f636..24ebfc1 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -1,5 +1,5 @@ -MIT License • mammalcolMIT License • mammalcol @@ -93,7 +93,7 @@

MIT License

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/docs/articles/index.html b/docs/articles/index.html index 61f8ee1..6a82cee 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -1,5 +1,5 @@ -Articles • mammalcolArticles • mammalcol @@ -86,7 +86,7 @@

All vignettes

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/docs/articles/mammalcol.html b/docs/articles/mammalcol.html index 047fffd..83e90e1 100644 --- a/docs/articles/mammalcol.html +++ b/docs/articles/mammalcol.html @@ -12,7 +12,7 @@ - + @@ -203,7 +203,7 @@

Sugested citation

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/docs/authors.html b/docs/authors.html index 33a3bc7..006ee4e 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -1,5 +1,5 @@ -Authors and Citation • mammalcolAuthors and Citation • mammalcol @@ -68,7 +68,7 @@
-

Authors

+

Authors and Citation

@@ -121,7 +121,7 @@

Citation

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/docs/getting_started.html b/docs/getting_started.html index 9f4d9db..4d7d874 100644 --- a/docs/getting_started.html +++ b/docs/getting_started.html @@ -1,5 +1,5 @@ -mammalcol • mammalcolmammalcol • mammalcol @@ -99,7 +99,7 @@

Installation -

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.9.

diff --git a/docs/index.html b/docs/index.html index 21422d8..209634f 100644 --- a/docs/index.html +++ b/docs/index.html @@ -12,20 +12,13 @@ - + - +

The goal of mammalcol is to allow easy access to the List of Mammal Species of Colombia.

+

Researchers can explore Colombia’s amazing variety of mammals using the mammalcol R package. This package includes information on 548 mammal species, making Colombia one of the world leaders in mammal diversity. The data comes from the latest “Checklist of the mammals (Mammalia) of Colombia” by Ramírez-Chaves et al (2021). But It’s important to remember that how scientists classify mammals keeps changing constantly, so the information in this package has been updated with the checklist Mamíferos de Colombia, which is published and updated regularly by the Colombian Mammal Society.

Installation

@@ -120,13 +114,26 @@

Installationdevtools::install_github("dlizcano/mammalcol")

+

load library +

+
+
+library(mammalcol)
+#> This is mammalcol 0.2.3
+#> 
+#> Attaching package: 'mammalcol'
+#> The following objects are masked _by_ '.GlobalEnv':
+#> 
+#>     mammalmap, search_mammalcol, sp_by_depto
+
+

Example

Search database

This is a basic example which shows you how to search mammal names in Colombia using a vector of mammal names.

-
+
 # define a vector with species to search for
 splist <- c("Tapirus bairdii", "Tapirus pinchaque", "Tapirus terrestris",
            "Tapirus terrestris",  "Pudu mephistophiles", "Tapirus bairdii")
@@ -162,7 +169,7 @@ 
Search database#>                                                                                                                                                                           distribution
 #> 1                                                                                                                                                          Antioquia | Chocó | Córdoba
 #> 2                                              Antioquia | Cauca | Cundinamarca | Huila | Meta | Nariño | Quindío | Risaralda | Tolima | Valle del Cauca | Caldas | Caquetá | Putumayo
-#> 3 Antioquia | Amazonas | Arauca | Caquetá | Cauca | Cesar | Córdoba | Guainia | La Guajira | Meta | Magdalena | Vaupés | Vichada | Guaviare | Casanare | Norte de Santander | Putumayo
+#> 3 Antioquia | Amazonas | Arauca | Caquetá | Cauca | Cesar | Córdoba | Guainía | La Guajira | Meta | Magdalena | Vaupés | Vichada | Guaviare | Casanare | Norte de Santander | Putumayo
 #> 4                                                                                                              Cauca | Huila | Nariño | Risaralda | Quindío | Tolima | Valle del Cauca
 #>                                                         source endemic
 #> 1 Proceedings of the United States National Museum 103:465-496      No
@@ -188,7 +195,7 @@ 
Search databaseSearch database with typos
 

 
mammalcol has the ability to identify and correct minor typos and lower case in the genus. Correcting potential typos or variations in species names through fuzzy matching is a crucial aspect of data management. This technique ensures precise retrieval by adeptly identifying and accommodating minor differences in input names, thus enhancing the reliability of analyses conducted on diverse, inconsistent, and ensemble datasets.

-
+
 # vector with species names and intentional typos
 splist <- c("Tapiru terrestre", "pudu mephistophiles", "tapirus bairdii")
 
@@ -215,7 +222,7 @@ 
Search database with typos#> 2     1       EN A2cd B1ab (i; ii; iii; iv; v) \r\n
 #> 3     1 EN A2cd+ B1ab (i,ii,iii)+ B2ab (i, ii, iii)
 #>                                                                                                                                                                           distribution
-#> 1 Antioquia | Amazonas | Arauca | Caquetá | Cauca | Cesar | Córdoba | Guainia | La Guajira | Meta | Magdalena | Vaupés | Vichada | Guaviare | Casanare | Norte de Santander | Putumayo
+#> 1 Antioquia | Amazonas | Arauca | Caquetá | Cauca | Cesar | Córdoba | Guainía | La Guajira | Meta | Magdalena | Vaupés | Vichada | Guaviare | Casanare | Norte de Santander | Putumayo
 #> 2                                                                                                              Cauca | Huila | Nariño | Risaralda | Quindío | Tolima | Valle del Cauca
 #> 3                                                                                                                                                          Antioquia | Chocó | Córdoba
 #>                                                         source endemic
@@ -240,7 +247,7 @@ 
Search database with typosProduce a map
 

 
The function mammalmap produces basic a map of distribution at the “Departamento” level for a single species.

-
+
 # write a species name in the function to map it
 mammalmap("Tapirus pinchaque")

 

@@ -248,7 +255,7 @@ 
Produce a mapRemove the legeng
 

 
Using the parameter legend=FALSE

-
+
 # write a species name in the function to map it
 mammalmap("Tapirus pinchaque", legend=FALSE)

 

@@ -257,7 +264,7 @@ 
Remove the legeng
 
See the full taxon table
 

-
+
 
 head(taxon)
 #>             scientificName  kingdom   phylum    class        order   family
@@ -328,7 +335,7 @@ 
See the full taxon tableSearch mammals present by departamento
 

 
Use the departamento name or a vector of departamentos to know the mammals species present. The argument type = “any” retrieve mammals present in any of those departamentos.

-
+
 occ.any <- sp_by_depto(c("Arauca", "Norte de Santander"), type = "any")
 head(occ.any)
 #>          scientificName         family        order
@@ -344,15 +351,15 @@ 
Search mammals present by depart
 #> 3                                                                             Norte de Santander
 #> 4                                                                 Magdalena | Norte de Santander
 #> 5 Amazonas | Caquetá | Casanare | Huila | Meta | Putumayo | Vaupés | Guaviare | Arauca | Guainía
-#> 6                Cundinamarca | Norte de Santander | Santander | Guania | Meta | Arauca | Tolima

+#> 6               Cundinamarca | Norte de Santander | Santander | Guainía | Meta | Arauca | Tolima

 
The argument type = “only” retrieves species present only in that departamento and in no other departamento.

-
+
 occ.only <- sp_by_depto(c("Norte de Santander"), type = "only")
 head(occ.only)
 #>    scientificName     family    order           locality
 #> 1 Chilomys fumeus Cricetidae Rodentia Norte de Santander

 
The argument all retrieves species present in both departamentos. The argument taxa limit the search to one order. occ.bats has the bats present in Arauca and Norte de Santander.

-
+
 occ.all <- sp_by_depto(c("Arauca", "Norte de Santander"), type = "all")
 occ.bats <- sp_by_depto(c("Arauca", "Norte de Santander"), type = "all", taxa = "Chiroptera")
 head(occ.bats)
@@ -368,14 +375,32 @@ 
Search mammals present by depart
 #> 2                                                                                             Arauca | Caldas | Norte de Santander | Tolima | Putumayo | Guaviare | Amazonas | Antioquia | Atlántico | Caquetá | Casanare | Guainía | Meta | Vichada
 #> 3                                                                                                                  Amazonas | Arauca | Boyacá | Casanare | Meta | Vichada | Caquetá | Cundinamarca | Norte de Santander | Putumayo | Guainía | Sucre
 #> 4 Caldas | Cauca | Quindío | Risaralda | Amazonas | Caquetá | Guaviare | Meta | Putumayo | Antioquia | Arauca | Casanare | Chocó | Córdoba | Guainía | Magdalena | Nariño | Norte de Santander | Sucre | Tolima | Valle del Cauca | Vaupés | Vichada
-#> 5              Caldas | Cauca | Cundinamarca | Quindío | Risaralda | Amazonas | Caqueta | Putumayo | Antioquia | Arauca | Casanare | Cesar | Chocó | Guainía | Huila | Magdalena | Nariño | Norte de Santander | Putumayo | Tolima | Valle del Cauca
-#> 6                                                                                                             Cundinamarca | Magdalena | Amazonas | Caquetá | Guaviare | Arauca | Casanare | Chocó | Cordoba | Guainia | Norte de Santander | Tolima

+#> 5              Caldas | Cauca | Cundinamarca | Quindío | Risaralda | Amazonas | Caquetá | Putumayo | Antioquia | Arauca | Casanare | Cesar | Chocó | Guainía | Huila | Magdalena | Nariño | Norte de Santander | Putumayo | Tolima | Valle del Cauca
+#> 6                                                                                                             Cundinamarca | Magdalena | Amazonas | Caquetá | Guaviare | Arauca | Casanare | Chocó | Córdoba | Guainía | Norte de Santander | Tolima

 

 

 
Sugested citation
 

-
-citation("mammalcol")

+
+citation("mammalcol")
+#> To cite mammalcol package in publications use:
+#> 
+#>   Lizcano, DJ. et al., (2024). mammalcol: Access to the List of Mammal
+#>   Species of Colombia. R package version 0.2.2
+#> 
+#> A BibTeX entry for LaTeX users is
+#> 
+#>   @Manual{,
+#>     title = {mammalcol: Access to the List of Mammal Species of Colombia},
+#>     author = {Diego J. Lizcano and Baltazar González and Alejandra Bonilla-Sánchez and Andres F. Suárez-Castro and Camilo A. Calderón-Acevedo},
+#>     year = {2024},
+#>     note = {R data package version 0.2.2},
+#>     url = {https://dlizcano.github.io/mammalcol/},
+#>   }
+#> 
+#> To cite just the original mammalcol dataset, please use: Mammals of
+#> Colombia / Mamíferos de Colombia. SCMas: <doi:10.15472/kl1whs>, but
+#> keep in mind taxonomy is dinamic and have changed.

 
Lizcano, DJ. (2024). mammalcol: Access to the List of Mammal Species of Colombia. R package version 0.1.0

 

 

@@ -422,6 +447,8 @@ 
Dev status

 
  • R-CMD-check
    • 
 
  • Codecov test coverage
    • 
 
  • CRAN status
    • 
+
  • lifecycle
    • 
+
  • size
    • 
 
 
    
 
@@ -436,7 +463,7 @@ 
    Dev status
    
 
 
    
   
    
-
    Site built with pkgdown 2.0.7.
    
+
    Site built with pkgdown 2.0.9.
    
 
    
 
       
diff --git a/docs/news/index.html b/docs/news/index.html
index 26ead4e..5e6466e 100644
--- a/docs/news/index.html
+++ b/docs/news/index.html
@@ -1,5 +1,5 @@
 
-Changelog • mammalcolChangelog • mammalcol
@@ -111,7 +111,7 @@ 
    mammalcol 0.1.0
 
    
 
 
    
-  
    Site built with pkgdown 2.0.7.
    
+  
    Site built with pkgdown 2.0.9.
    
 
    
 
       
    
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index 28c7b50..d427031 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -1,9 +1,9 @@
-pandoc: 3.1.1
-pkgdown: 2.0.7
+pandoc: 3.1.11
+pkgdown: 2.0.9
 pkgdown_sha: ~
 articles:
   mammalcol: mammalcol.html
-last_built: 2024-04-04T14:48Z
+last_built: 2024-05-21T17:48Z
 urls:
   reference: https://dlizcano.github.io/mammalcol/reference
   article: https://dlizcano.github.io/mammalcol/articles
diff --git a/docs/reference/colmap.html b/docs/reference/colmap.html
index b30f43b..f41e66b 100644
--- a/docs/reference/colmap.html
+++ b/docs/reference/colmap.html
@@ -1,5 +1,5 @@
 
-colmap Dataset — colmap • mammalcolcolmap Dataset — colmap • mammalcoldistribution Dataset — distribution • mammalcolExamples
    
 
    
 
 
    
-  
    Site built with pkgdown 2.0.7.
    
+  
    Site built with pkgdown 2.0.9.
    
 
    
 
       
    
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 7ccfc6d..636968c 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -1,5 +1,5 @@
 
-Function reference • mammalcolFunction reference • mammalcol
@@ -107,7 +107,7 @@ 
    All functions 
 
 
    
-  
    Site built with pkgdown 2.0.7.
    
+  
    Site built with pkgdown 2.0.9.
    
 
    
 
       
    
diff --git a/docs/reference/mammalcol-package.html b/docs/reference/mammalcol-package.html
index d51fcf8..7697bc4 100644
--- a/docs/reference/mammalcol-package.html
+++ b/docs/reference/mammalcol-package.html
@@ -1,5 +1,5 @@
 
-mammalcol: Access to the List of Mammal Species of Colombia — mammalcol-package • mammalcolmammalcol: Access to the List of Mammal Species of Colombia — mammalcol-package • mammalcolPlot a map for one species of the List of the Mammals of Colombia — mammalmap • mammalcolPlot a map for one species of the List of the Mammals of Colombia — mammalmap • mammalcolPipe operator — %>% • mammalcolPipe operator — %>% • mammalcol
@@ -109,7 +109,7 @@ 
    Value
    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/search_mammalcol.html b/docs/reference/search_mammalcol.html index df52c4c..ff8722d 100644 --- a/docs/reference/search_mammalcol.html +++ b/docs/reference/search_mammalcol.html @@ -1,5 +1,5 @@ -Retrieve Data from the List of the Mammals of Colombia — search_mammalcol • mammalcolRetrieve Data from the List of the Mammals of Colombia — search_mammalcol • mammalcolMammal occurrence by departamento — sp_by_depto • mammalcolMammal occurrence by departamento — sp_by_depto • mammalcol @@ -178,7 +178,7 @@

    Examples

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.

    diff --git a/docs/reference/taxon.html b/docs/reference/taxon.html index 688ec22..c424660 100644 --- a/docs/reference/taxon.html +++ b/docs/reference/taxon.html @@ -1,5 +1,5 @@ -taxon Dataset — taxon • mammalcolExamples

    -

    Site built with pkgdown 2.0.7.

    +

    Site built with pkgdown 2.0.9.